Wall clock time and date at job start Wed Apr 1 2020 04:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34728 * 117.00142 * 2 1 4 4 O 1.21475 * 120.00386 * 0.02562 * 3 2 1 5 5 C 1.47740 * 119.99734 * 179.97438 * 3 2 1 6 6 N 1.30522 * 121.48917 * 0.02562 * 5 3 2 7 7 S 1.56532 * 108.35206 * 180.02562 * 6 5 3 8 8 C 1.71983 * 96.04877 * 0.02562 * 7 6 5 9 9 N 1.38779 * 127.48667 * 180.02562 * 8 7 6 10 10 C 1.34782 * 119.99678 * 0.02562 * 9 8 7 11 11 O 1.21274 * 120.00019 * 359.97438 * 10 9 8 12 12 C 1.50696 * 119.99987 * 180.02562 * 10 9 8 13 13 H 1.09004 * 109.47239 * 60.00094 * 12 10 9 14 14 C 1.50701 * 109.47089 * 300.00105 * 12 10 9 15 15 H 1.07997 * 119.99822 * 333.07875 * 14 12 10 16 16 C 1.37875 * 120.00189 * 153.07658 * 14 12 10 17 17 N 1.31520 * 119.99852 * 6.40619 * 16 14 12 18 18 Si 1.86798 * 120.00214 * 186.40361 * 16 14 12 19 19 H 1.48501 * 109.47252 * 180.02562 * 18 16 14 20 20 H 1.48507 * 109.46977 * 299.99910 * 18 16 14 21 21 H 1.48500 * 109.47268 * 59.99663 * 18 16 14 22 22 C 1.50695 * 109.47284 * 179.97438 * 12 10 9 23 23 C 1.38241 * 119.99687 * 66.42495 * 22 12 10 24 24 C 1.38239 * 119.99650 * 179.80624 * 23 22 12 25 25 C 1.38234 * 120.00120 * 0.40474 * 24 23 22 26 26 C 1.38235 * 119.99950 * 359.84837 * 25 24 23 27 27 C 1.38232 * 120.00409 * 359.96078 * 26 25 24 28 28 N 1.31372 * 105.03321 * 0.26019 * 8 7 6 29 29 H 1.09002 * 109.46676 * 59.99714 * 1 2 3 30 30 H 1.08993 * 109.47199 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46762 * 299.99880 * 1 2 3 32 32 H 0.96992 * 120.00301 * 180.02562 * 9 8 7 33 33 H 0.96999 * 119.99629 * 355.59772 * 17 16 14 34 34 H 1.07997 * 120.00241 * 0.02562 * 23 22 12 35 35 H 1.07996 * 119.99935 * 180.23172 * 24 23 22 36 36 H 1.07998 * 120.00059 * 179.82950 * 25 24 23 37 37 H 1.08000 * 120.00015 * 179.97438 * 26 25 24 38 38 H 1.07993 * 120.00635 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4022 2.2193 0.0005 5 6 3.5391 1.2776 0.0006 6 7 4.2781 0.2018 0.0006 7 16 5.7818 0.6367 0.0019 8 6 5.4807 2.3300 0.0033 9 7 6.4170 3.3543 0.0043 10 6 7.7332 3.0642 0.0038 11 8 8.0992 1.9080 0.0029 12 6 8.7500 4.1764 0.0055 13 1 8.6159 4.7899 0.8965 14 6 8.5645 5.0285 -1.2236 15 1 8.1356 4.6005 -2.1176 16 6 8.9422 6.3543 -1.2068 17 7 9.5785 6.8436 -0.1649 18 14 8.5505 7.4558 -2.6637 19 1 9.0598 8.8255 -2.3999 20 1 9.2008 6.9129 -3.8835 21 1 7.0802 7.5042 -2.8665 22 6 10.1375 3.5886 0.0051 23 6 10.5874 2.8795 -1.0930 24 6 11.8618 2.3437 -1.0949 25 6 12.6831 2.5098 0.0045 26 6 12.2313 3.2144 1.1046 27 6 10.9585 3.7536 1.1051 28 7 4.1719 2.4433 0.0084 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 6.1242 4.2790 0.0054 33 1 9.7256 6.2896 0.6176 34 1 9.9447 2.7472 -1.9507 35 1 12.2146 1.7929 -1.9542 36 1 13.6777 2.0888 0.0041 37 1 12.8728 3.3438 1.9637 38 1 10.6053 4.3037 1.9647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417447886.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:16 Heat of formation + Delta-G solvation = -31.616473 kcal Electronic energy + Delta-G solvation = -26872.190160 eV Core-core repulsion = 22807.225974 eV Total energy + Delta-G solvation = -4064.964186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.25082 -40.25204 -39.67676 -38.24253 -36.58954 -35.09129 -34.33732 -32.09223 -31.12288 -30.21908 -28.67994 -27.82150 -26.34879 -24.20897 -23.12566 -21.85815 -21.60142 -20.92432 -20.21682 -19.04734 -18.17441 -17.50124 -17.07148 -16.92937 -16.85940 -16.22614 -16.06215 -15.68001 -14.84327 -14.52797 -14.10450 -14.06873 -13.98082 -13.49476 -13.33939 -12.84291 -12.58534 -12.53055 -12.44948 -12.14119 -11.83133 -11.73236 -11.69654 -11.27048 -11.02030 -11.00808 -10.87190 -10.52431 -10.40512 -10.30354 -10.11128 -9.96129 -9.59693 -9.23978 -8.82399 -8.57938 -8.21691 -7.90754 -6.79201 -4.59502 0.31914 0.88756 1.40032 1.62662 1.99379 2.11140 2.19862 2.71550 2.98682 3.08117 3.26331 3.29127 3.45948 4.23513 4.39253 4.52523 4.86069 4.94051 4.95042 4.95394 5.12211 5.27898 5.43311 5.51115 5.54512 5.68122 5.82554 5.98277 6.09861 6.18021 6.22693 6.33347 6.61957 6.75277 6.87128 7.10703 7.14942 7.27381 7.40827 7.53930 7.61585 7.73307 7.93738 8.12899 8.38912 9.13322 10.59565 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.003190 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.599175 B = 8776.461839 C =10437.332009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.336 6.336 3 C 0.561 3.439 4 O -0.472 6.472 5 C 0.233 3.767 6 N -0.544 5.544 7 S 0.525 5.475 8 C 0.220 3.780 9 N -0.599 5.599 10 C 0.534 3.466 11 O -0.518 6.518 12 C 0.057 3.943 13 H 0.077 0.923 14 C -0.608 4.608 15 H 0.063 0.937 16 C 0.038 3.962 17 N -0.882 5.882 18 Si 1.068 2.932 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.030 4.030 23 C -0.078 4.078 24 C -0.130 4.130 25 C -0.140 4.140 26 C -0.127 4.127 27 C -0.122 4.122 28 N -0.480 5.480 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.435 0.565 33 H 0.274 0.726 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 -10.393 1.454 12.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.251 6.251 3 C 0.397 3.603 4 O -0.355 6.355 5 C -0.056 4.056 6 N -0.393 5.393 7 S 0.666 5.334 8 C -0.156 4.156 9 N -0.249 5.249 10 C 0.325 3.675 11 O -0.391 6.391 12 C 0.035 3.965 13 H 0.095 0.905 14 C -0.645 4.645 15 H 0.081 0.919 16 C -0.170 4.170 17 N -0.515 5.515 18 Si 0.895 3.105 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.208 1.208 22 C -0.031 4.031 23 C -0.096 4.096 24 C -0.149 4.149 25 C -0.158 4.158 26 C -0.145 4.145 27 C -0.141 4.141 28 N -0.212 5.212 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.276 0.724 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.042 -10.374 0.888 12.038 hybrid contribution -1.187 -0.018 0.521 1.297 sum -7.230 -10.392 1.410 12.738 Atomic orbital electron populations 1.23385 0.75353 1.04099 1.02895 1.86631 1.23582 1.30995 1.83920 1.19198 0.85338 0.82004 0.73744 1.90892 1.65054 1.35932 1.43657 1.21033 0.94560 0.82791 1.07209 1.73238 1.08550 1.31817 1.25663 1.82729 1.01145 0.94020 1.55516 1.26220 0.90052 1.00214 0.99094 1.43112 1.03913 1.08580 1.69309 1.22349 0.81136 0.92139 0.71898 1.90583 1.78526 1.21991 1.48000 1.18131 0.85936 0.90456 1.01941 0.90491 1.21549 1.49251 0.96304 0.97410 0.91886 1.25913 0.92202 0.96279 1.02647 1.70829 1.33847 1.41391 1.05427 0.83523 0.76659 0.76196 0.74168 1.20408 1.21056 1.20836 1.19976 0.96445 0.93948 0.92734 1.20806 0.94975 0.96063 0.97771 1.21003 0.94714 1.01087 0.98050 1.20883 0.99223 1.01216 0.94498 1.20908 0.96051 0.99368 0.98195 1.20959 0.94638 1.00592 0.97877 1.68514 1.03785 1.25147 1.23800 0.91524 0.87565 0.91538 0.72405 0.91399 0.86801 0.87166 0.87309 0.87176 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.34 -4.39 10.44 -40.57 -0.42 -4.81 16 3 C 0.56 8.81 7.97 34.61 0.28 9.08 16 4 O -0.47 -8.17 16.74 -19.25 -0.32 -8.49 16 5 C 0.23 3.92 7.46 -158.94 -1.19 2.73 16 6 N -0.54 -8.67 11.29 21.16 0.24 -8.43 16 7 S 0.52 8.04 20.66 -107.50 -2.22 5.82 16 8 C 0.22 3.72 8.47 -86.13 -0.73 2.99 16 9 N -0.60 -10.24 5.30 -12.52 -0.07 -10.31 16 10 C 0.53 10.04 7.00 -10.98 -0.08 9.96 16 11 O -0.52 -9.99 13.18 5.56 0.07 -9.92 16 12 C 0.06 1.17 1.94 -94.08 -0.18 0.98 16 13 H 0.08 1.61 6.63 -51.93 -0.34 1.26 16 14 C -0.61 -13.80 7.45 -34.44 -0.26 -14.05 16 15 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 16 C 0.04 0.92 5.45 -17.82 -0.10 0.82 16 17 N -0.88 -22.57 13.63 55.43 0.76 -21.81 16 18 Si 1.07 21.96 29.91 -169.99 -5.08 16.87 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 22 C -0.03 -0.61 4.17 -104.62 -0.44 -1.05 16 23 C -0.08 -1.56 8.33 -39.58 -0.33 -1.89 16 24 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 25 C -0.14 -2.31 10.05 -39.58 -0.40 -2.71 16 26 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 27 C -0.12 -2.33 9.50 -39.58 -0.38 -2.71 16 28 N -0.48 -8.51 10.71 -24.70 -0.26 -8.77 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.44 7.08 8.70 -40.82 -0.36 6.72 16 33 H 0.27 6.84 6.49 -40.82 -0.26 6.57 16 34 H 0.11 2.29 7.88 -52.49 -0.41 1.88 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.11 1.97 7.96 -52.49 -0.42 1.56 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -28.35 355.70 -9.01 -37.36 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -3.54 Total: 6.85 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -3.52 Total: 0.28 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.66 Total: -49.32 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.67 Total: -23.22 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.08 Total: 16.87 kcal Atomic # 16 Polarization: 8.04 SS G_CDS: -2.22 Total: 5.82 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.35 -9.01 -37.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417447886.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.745 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds