Wall clock time and date at job start Wed Apr 1 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34728 * 117.00142 * 2 1 4 4 O 1.21475 * 120.00386 * 0.02562 * 3 2 1 5 5 C 1.47740 * 119.99734 * 179.97438 * 3 2 1 6 6 N 1.30522 * 121.48917 * 0.02562 * 5 3 2 7 7 S 1.56532 * 108.35206 * 180.02562 * 6 5 3 8 8 C 1.71983 * 96.04877 * 0.02562 * 7 6 5 9 9 N 1.38779 * 127.48667 * 180.02562 * 8 7 6 10 10 C 1.34782 * 119.99678 * 0.02562 * 9 8 7 11 11 O 1.21274 * 120.00019 * 359.97438 * 10 9 8 12 12 C 1.50696 * 119.99987 * 180.02562 * 10 9 8 13 13 H 1.09004 * 109.47239 * 60.00094 * 12 10 9 14 14 C 1.50701 * 109.47089 * 300.00105 * 12 10 9 15 15 H 1.07997 * 119.99822 * 333.07875 * 14 12 10 16 16 C 1.37875 * 120.00189 * 153.07658 * 14 12 10 17 17 N 1.31520 * 119.99852 * 6.40619 * 16 14 12 18 18 Si 1.86798 * 120.00214 * 186.40361 * 16 14 12 19 19 H 1.48501 * 109.47252 * 180.02562 * 18 16 14 20 20 H 1.48507 * 109.46977 * 299.99910 * 18 16 14 21 21 H 1.48500 * 109.47268 * 59.99663 * 18 16 14 22 22 C 1.50695 * 109.47284 * 179.97438 * 12 10 9 23 23 C 1.38241 * 119.99687 * 66.42495 * 22 12 10 24 24 C 1.38239 * 119.99650 * 179.80624 * 23 22 12 25 25 C 1.38234 * 120.00120 * 0.40474 * 24 23 22 26 26 C 1.38235 * 119.99950 * 359.84837 * 25 24 23 27 27 C 1.38232 * 120.00409 * 359.96078 * 26 25 24 28 28 N 1.31372 * 105.03321 * 0.26019 * 8 7 6 29 29 H 1.09002 * 109.46676 * 59.99714 * 1 2 3 30 30 H 1.08993 * 109.47199 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46762 * 299.99880 * 1 2 3 32 32 H 0.96992 * 120.00301 * 180.02562 * 9 8 7 33 33 H 0.96999 * 119.99629 * 355.59772 * 17 16 14 34 34 H 1.07997 * 120.00241 * 0.02562 * 23 22 12 35 35 H 1.07996 * 119.99935 * 180.23172 * 24 23 22 36 36 H 1.07998 * 120.00059 * 179.82950 * 25 24 23 37 37 H 1.08000 * 120.00015 * 179.97438 * 26 25 24 38 38 H 1.07993 * 120.00635 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4022 2.2193 0.0005 5 6 3.5391 1.2776 0.0006 6 7 4.2781 0.2018 0.0006 7 16 5.7818 0.6367 0.0019 8 6 5.4807 2.3300 0.0033 9 7 6.4170 3.3543 0.0043 10 6 7.7332 3.0642 0.0038 11 8 8.0992 1.9080 0.0029 12 6 8.7500 4.1764 0.0055 13 1 8.6159 4.7899 0.8965 14 6 8.5645 5.0285 -1.2236 15 1 8.1356 4.6005 -2.1176 16 6 8.9422 6.3543 -1.2068 17 7 9.5785 6.8436 -0.1649 18 14 8.5505 7.4558 -2.6637 19 1 9.0598 8.8255 -2.3999 20 1 9.2008 6.9129 -3.8835 21 1 7.0802 7.5042 -2.8665 22 6 10.1375 3.5886 0.0051 23 6 10.5874 2.8795 -1.0930 24 6 11.8618 2.3437 -1.0949 25 6 12.6831 2.5098 0.0045 26 6 12.2313 3.2144 1.1046 27 6 10.9585 3.7536 1.1051 28 7 4.1719 2.4433 0.0084 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 6.1242 4.2790 0.0054 33 1 9.7256 6.2896 0.6176 34 1 9.9447 2.7472 -1.9507 35 1 12.2146 1.7929 -1.9542 36 1 13.6777 2.0888 0.0041 37 1 12.8728 3.3438 1.9637 38 1 10.6053 4.3037 1.9647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417447886.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:15 Heat of formation + Delta-G solvation = -47.220969 kcal Electronic energy + Delta-G solvation = -26872.866822 eV Core-core repulsion = 22807.225974 eV Total energy + Delta-G solvation = -4065.640847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.52761 -41.65839 -40.92563 -39.64608 -37.71132 -36.50367 -36.00717 -33.47478 -32.70132 -31.61439 -29.70349 -29.25917 -27.49543 -25.89332 -24.46413 -23.26818 -22.98999 -22.21858 -21.59366 -20.40424 -19.56398 -19.06377 -18.41319 -18.04695 -18.03016 -17.68709 -17.41812 -16.98582 -16.32117 -15.93383 -15.64647 -15.47868 -15.08630 -15.00077 -14.50165 -14.29032 -14.04841 -13.90145 -13.65205 -13.26178 -13.16586 -13.07462 -13.00962 -12.89052 -12.60504 -12.10220 -11.97834 -11.94832 -11.91984 -11.79938 -11.45202 -11.30923 -11.13547 -10.94221 -10.60020 -9.91006 -9.62647 -9.37745 -8.65604 -6.44745 -0.99239 -0.41133 0.08972 0.38014 0.61821 0.70119 0.94412 1.31246 1.60761 1.63170 1.69097 1.74212 1.82461 2.54978 3.04255 3.17868 3.27050 3.69136 3.78110 3.97095 4.14136 4.20355 4.22873 4.30352 4.33342 4.40798 4.57342 4.66548 4.73187 4.84155 4.90740 4.95422 5.22105 5.33500 5.52534 5.61775 5.73398 5.75233 6.00725 6.06948 6.12037 6.32187 6.41793 6.49725 6.68013 7.32644 8.74185 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.003190 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.599175 B = 8776.461839 C =10437.332009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.338 6.338 3 C 0.564 3.436 4 O -0.495 6.495 5 C 0.221 3.779 6 N -0.541 5.541 7 S 0.566 5.434 8 C 0.203 3.797 9 N -0.595 5.595 10 C 0.540 3.460 11 O -0.524 6.524 12 C 0.057 3.943 13 H 0.067 0.933 14 C -0.601 4.601 15 H 0.056 0.944 16 C 0.000 4.000 17 N -0.914 5.914 18 Si 1.103 2.897 19 H -0.288 1.288 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.053 4.053 23 C -0.103 4.103 24 C -0.133 4.133 25 C -0.137 4.137 26 C -0.128 4.128 27 C -0.142 4.142 28 N -0.495 5.495 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.071 0.929 32 H 0.437 0.563 33 H 0.268 0.732 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 -12.018 1.205 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.253 6.253 3 C 0.401 3.599 4 O -0.380 6.380 5 C -0.068 4.068 6 N -0.390 5.390 7 S 0.707 5.293 8 C -0.172 4.172 9 N -0.245 5.245 10 C 0.330 3.670 11 O -0.398 6.398 12 C 0.036 3.964 13 H 0.085 0.915 14 C -0.638 4.638 15 H 0.074 0.926 16 C -0.203 4.203 17 N -0.548 5.548 18 Si 0.926 3.074 19 H -0.213 1.213 20 H -0.204 1.204 21 H -0.193 1.193 22 C -0.054 4.054 23 C -0.121 4.121 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.146 4.146 27 C -0.160 4.160 28 N -0.227 5.227 29 H 0.089 0.911 30 H 0.160 0.840 31 H 0.089 0.911 32 H 0.278 0.722 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.155 0.845 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.750 -12.033 0.638 13.351 hybrid contribution -1.312 0.315 0.627 1.488 sum -7.062 -11.718 1.264 13.740 Atomic orbital electron populations 1.23818 0.72688 1.06651 1.03388 1.86624 1.26118 1.29381 1.83130 1.19123 0.84909 0.82507 0.73316 1.90874 1.65356 1.36809 1.45008 1.21240 0.95393 0.82599 1.07581 1.73183 1.08896 1.31723 1.25188 1.82607 1.00385 0.92369 1.53954 1.26278 0.90001 1.00838 1.00046 1.42891 1.03519 1.08887 1.69177 1.21919 0.81400 0.91601 0.72068 1.90561 1.78854 1.21900 1.48451 1.18030 0.87122 0.90703 1.00572 0.91521 1.21658 1.47930 0.96389 0.97824 0.92578 1.26844 0.91964 0.97759 1.03746 1.70895 1.36126 1.41696 1.06109 0.83061 0.77320 0.74541 0.72435 1.21317 1.20385 1.19308 1.20004 0.96348 0.95239 0.93843 1.20869 0.96309 0.97506 0.97418 1.21354 0.93785 1.00487 0.99446 1.21333 1.00535 1.00089 0.93484 1.21308 0.95437 0.98305 0.99509 1.21159 0.95728 1.01350 0.97786 1.68499 1.04221 1.26121 1.23842 0.91107 0.83972 0.91051 0.72198 0.92028 0.88059 0.84521 0.83595 0.84189 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.60 16 2 O -0.34 -8.33 10.44 -56.38 -0.59 -8.92 16 3 C 0.56 17.37 7.97 70.33 0.56 17.93 16 4 O -0.50 -16.99 16.74 19.92 0.33 -16.66 16 5 C 0.22 7.30 7.46 137.97 1.03 8.32 16 6 N -0.54 -16.67 11.29 -86.98 -0.98 -17.65 16 7 S 0.57 16.83 20.66 -56.49 -1.17 15.66 16 8 C 0.20 6.85 8.47 178.78 1.51 8.36 16 9 N -0.59 -20.61 5.30 -311.93 -1.65 -22.26 16 10 C 0.54 20.57 7.00 87.65 0.61 21.19 16 11 O -0.52 -20.20 13.18 -3.01 -0.04 -20.24 16 12 C 0.06 2.40 1.94 -13.03 -0.03 2.38 16 13 H 0.07 2.91 6.63 -2.38 -0.02 2.90 16 14 C -0.60 -27.77 7.45 25.60 0.19 -27.57 16 15 H 0.06 2.62 7.82 -2.91 -0.02 2.60 16 16 C 0.00 0.02 5.45 84.65 0.46 0.48 16 17 N -0.91 -47.72 13.63 21.45 0.29 -47.43 16 18 Si 1.10 44.54 29.91 68.60 2.05 46.59 16 19 H -0.29 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 21 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 22 C -0.05 -2.21 4.17 -19.86 -0.08 -2.29 16 23 C -0.10 -4.08 8.33 22.27 0.19 -3.90 16 24 C -0.13 -4.41 10.05 22.27 0.22 -4.19 16 25 C -0.14 -4.11 10.05 22.27 0.22 -3.88 16 26 C -0.13 -4.10 10.05 22.27 0.22 -3.87 16 27 C -0.14 -5.39 9.50 22.27 0.21 -5.17 16 28 N -0.49 -17.48 10.71 -232.05 -2.49 -19.96 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.44 14.59 8.70 -92.71 -0.81 13.78 16 33 H 0.27 13.82 6.49 -92.71 -0.60 13.22 16 34 H 0.10 4.15 7.88 -2.91 -0.02 4.13 16 35 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 36 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 38 H 0.11 4.08 7.96 -2.91 -0.02 4.06 16 Total: -1.00 -60.82 355.70 2.79 -58.03 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.50 Total: 23.46 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.53 Total: 9.38 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -4.83 Total: -107.30 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -0.29 Total: -45.82 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.05 Total: 46.59 kcal Atomic # 16 Polarization: 16.83 SS G_CDS: -1.17 Total: 15.66 kcal Total: -60.82 2.79 -58.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417447886.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.805 kcal (2) G-P(sol) polarization free energy of solvation -60.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds