Wall clock time and date at job start Wed Apr 1 2020 04:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47102 * 2 1 4 4 C 1.53000 * 109.47042 * 240.00024 * 2 1 3 5 5 N 1.46503 * 109.47099 * 179.97438 * 4 2 1 6 6 S 1.65595 * 120.00059 * 164.06014 * 5 4 2 7 7 O 1.42100 * 106.40337 * 307.72420 * 6 5 4 8 8 O 1.42108 * 106.40254 * 174.80947 * 6 5 4 9 9 C 1.76195 * 107.21874 * 61.26738 * 6 5 4 10 10 C 1.37642 * 120.12639 * 244.23987 * 9 6 5 11 11 C 1.38614 * 120.24624 * 180.29797 * 10 9 6 12 12 C 1.38660 * 120.49954 * 359.44596 * 11 10 9 13 13 C 1.37592 * 120.24785 * 0.55580 * 12 11 10 14 14 C 1.40697 * 120.12915 * 64.26764 * 9 6 5 15 15 C 1.41394 * 120.24366 * 359.94699 * 14 9 6 16 16 H 1.08005 * 120.00068 * 331.63981 * 15 14 9 17 17 C 1.39948 * 119.99840 * 151.62923 * 15 14 9 18 18 N 1.30818 * 119.99929 * 348.05672 * 17 15 14 19 19 Si 1.86806 * 119.99787 * 168.05794 * 17 15 14 20 20 H 1.48498 * 109.47142 * 60.00133 * 19 17 15 21 21 H 1.48505 * 109.47034 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.46930 * 300.00172 * 19 17 15 23 23 S 1.81401 * 109.46949 * 119.99988 * 2 1 3 24 24 C 1.81394 * 101.92400 * 304.99947 * 23 2 1 25 25 O 1.42094 * 108.57976 * 59.48990 * 23 2 1 26 26 O 1.42104 * 108.57376 * 190.51432 * 23 2 1 27 27 H 1.08999 * 109.47373 * 299.99793 * 1 2 3 28 28 H 1.09002 * 109.47198 * 59.99864 * 1 2 3 29 29 H 1.09011 * 109.47107 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47538 * 59.99987 * 4 2 1 31 31 H 1.09000 * 109.47500 * 299.99679 * 4 2 1 32 32 H 0.97004 * 119.99992 * 344.06076 * 5 4 2 33 33 H 1.08001 * 119.87725 * 0.02562 * 10 9 6 34 34 H 1.07997 * 119.74865 * 179.69820 * 11 10 9 35 35 H 1.08009 * 119.87285 * 180.30017 * 12 11 10 36 36 H 1.08005 * 120.12410 * 179.74837 * 13 12 11 37 37 H 0.97001 * 119.99764 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.46974 * 60.00213 * 24 23 2 39 39 H 1.09001 * 109.47284 * 180.02562 * 24 23 2 40 40 H 1.09010 * 109.47080 * 300.00273 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5050 -0.7207 -1.2496 6 16 4.3331 -1.7511 -2.2469 7 8 3.8120 -3.0505 -2.0035 8 8 5.7094 -1.4267 -2.1055 9 6 3.8927 -1.3405 -3.9028 10 6 3.2171 -2.2505 -4.6838 11 6 2.8749 -1.9324 -5.9888 12 6 3.1979 -0.6925 -6.5188 13 6 3.8731 0.2326 -5.7563 14 6 4.2309 -0.0815 -4.4320 15 6 4.9244 0.8615 -3.6389 16 1 4.8085 0.8533 -2.5651 17 6 5.7612 1.8052 -4.2452 18 7 6.0877 1.6760 -5.5054 19 14 6.4117 3.2495 -3.2550 20 1 7.2110 2.7446 -2.1099 21 1 7.2688 4.0979 -4.1217 22 1 5.2722 4.0545 -2.7466 23 16 2.1346 -0.8551 1.4812 24 6 1.2998 0.0576 2.8079 25 8 1.6408 -2.1874 1.4680 26 8 3.5341 -0.6349 1.5913 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0278 -0.0005 30 1 1.6766 -0.2075 -2.1393 31 1 1.6767 -1.7489 -1.2493 32 1 3.9899 -0.1168 -0.6656 33 1 2.9565 -3.2176 -4.2797 34 1 2.3491 -2.6543 -6.5961 35 1 2.9220 -0.4535 -7.5354 36 1 4.1273 1.1963 -6.1725 37 1 6.6674 2.3304 -5.9257 38 1 0.2202 -0.0210 2.6794 39 1 1.5828 -0.3636 3.7726 40 1 1.5949 1.1063 2.7690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423812887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:23 Heat of formation + Delta-G solvation = -127.906365 kcal Electronic energy + Delta-G solvation = -27511.381964 eV Core-core repulsion = 23545.393536 eV Total energy + Delta-G solvation = -3965.988429 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -37.61916 -37.05058 -36.68095 -36.13424 -35.94206 -34.79577 -33.91445 -32.52372 -30.24843 -29.63818 -29.55525 -25.82380 -25.50336 -22.71697 -21.66409 -21.14934 -18.98023 -18.54362 -17.72848 -17.24410 -16.84840 -16.66030 -16.03454 -15.83037 -15.44575 -15.34338 -14.59833 -14.31772 -14.00292 -13.56140 -13.48978 -13.31788 -13.22858 -13.07151 -12.89171 -12.76413 -12.58358 -12.09184 -11.99750 -11.91679 -11.67344 -11.52573 -11.30396 -11.16754 -11.15634 -11.08933 -10.99258 -10.92612 -10.69559 -10.52936 -10.43706 -9.92768 -9.49894 -9.43895 -8.88379 -8.05842 -7.62594 -7.04798 -4.78420 -0.15248 1.50515 2.32057 2.60612 2.72484 2.95045 2.98024 3.11590 3.52978 3.73315 3.76475 3.94216 4.27944 4.37316 4.42656 4.54679 4.74165 4.80901 4.90139 5.17150 5.23819 5.34834 5.39684 5.59173 5.64337 5.77852 5.79002 6.02126 6.11070 6.22995 6.39884 6.75774 6.93563 7.06475 7.28455 7.44386 7.49229 7.64743 7.79198 7.87586 8.26775 8.47991 8.62703 9.88084 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.004902 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.779712 B = 5710.668535 C = 6747.781975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.579 4.579 3 H 0.146 0.854 4 C 0.139 3.861 5 N -1.136 6.136 6 S 2.697 3.303 7 O -0.992 6.992 8 O -0.957 6.957 9 C -0.776 4.776 10 C -0.003 4.003 11 C -0.250 4.250 12 C -0.076 4.076 13 C -0.158 4.158 14 C 0.186 3.814 15 C -0.447 4.447 16 H 0.088 0.912 17 C 0.081 3.919 18 N -0.775 5.775 19 Si 0.913 3.087 20 H -0.255 1.255 21 H -0.274 1.274 22 H -0.260 1.260 23 S 2.414 3.586 24 C -0.663 4.663 25 O -0.928 6.928 26 O -0.930 6.930 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.420 0.580 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.288 0.712 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.387 4.118 10.314 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.690 4.690 3 H 0.164 0.836 4 C 0.012 3.988 5 N -0.895 5.895 6 S 2.795 3.205 7 O -0.983 6.983 8 O -0.947 6.947 9 C -0.872 4.872 10 C -0.023 4.023 11 C -0.270 4.270 12 C -0.095 4.095 13 C -0.178 4.178 14 C 0.182 3.818 15 C -0.475 4.475 16 H 0.106 0.894 17 C -0.141 4.141 18 N -0.398 5.398 19 Si 0.736 3.264 20 H -0.178 1.178 21 H -0.199 1.199 22 H -0.184 1.184 23 S 2.594 3.406 24 C -0.812 4.812 25 O -0.926 6.926 26 O -0.926 6.926 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.256 0.744 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.099 0.901 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.161 2.722 10.410 14.800 hybrid contribution -0.303 2.124 -0.178 2.153 sum -10.464 4.847 10.232 15.417 Atomic orbital electron populations 1.21706 0.89373 1.04594 1.04655 1.30324 1.07113 1.14209 1.17359 0.83560 1.20937 0.80424 1.01448 0.96028 1.56076 1.14063 1.59942 1.59447 1.01254 0.73117 0.72107 0.74048 1.93470 1.81148 1.37760 1.85895 1.93558 1.30602 1.83987 1.86558 1.29842 1.29751 1.04954 1.22655 1.20280 0.92225 0.96073 0.93695 1.20492 1.11756 0.98356 0.96427 1.20908 0.96872 0.94134 0.97600 1.21499 1.00918 0.99930 0.95451 1.16996 0.84959 0.87801 0.92082 1.19864 1.20947 1.11320 0.95415 0.89390 1.25950 0.94586 0.98440 0.95081 1.69770 1.25318 1.32665 1.12054 0.86249 0.79749 0.79626 0.80790 1.17838 1.19880 1.18441 1.08336 0.76572 0.77247 0.78477 1.30385 1.15090 1.15847 1.19877 1.93603 1.81886 1.31441 1.85628 1.93597 1.27432 1.86382 1.85234 0.91031 0.89530 0.90081 0.88812 0.88827 0.74444 0.87275 0.88690 0.88817 0.85747 0.90050 0.85220 0.85356 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.90 37.16 0.33 -0.65 16 2 C -0.58 -5.69 2.88 -26.73 -0.08 -5.76 16 3 H 0.15 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.14 2.00 5.61 -4.04 -0.02 1.97 16 5 N -1.14 -20.75 4.36 -10.61 -0.05 -20.79 16 6 S 2.70 61.85 4.94 -107.50 -0.53 61.32 16 7 O -0.99 -23.71 16.56 -57.17 -0.95 -24.66 16 8 O -0.96 -24.98 16.63 -57.17 -0.95 -25.93 16 9 C -0.78 -18.60 5.86 -38.87 -0.23 -18.83 16 10 C 0.00 -0.06 9.53 -39.66 -0.38 -0.44 16 11 C -0.25 -5.40 10.05 -39.29 -0.39 -5.79 16 12 C -0.08 -1.68 10.02 -39.66 -0.40 -2.08 16 13 C -0.16 -3.84 8.66 -38.88 -0.34 -4.18 16 14 C 0.19 4.69 5.55 -106.83 -0.59 4.10 16 15 C -0.45 -11.11 7.67 -37.74 -0.29 -11.40 16 16 H 0.09 2.03 5.78 -52.48 -0.30 1.73 16 17 C 0.08 1.93 5.23 -17.34 -0.09 1.84 16 18 N -0.78 -18.92 10.88 55.55 0.60 -18.31 16 19 Si 0.91 17.79 29.58 -169.99 -5.03 12.77 16 20 H -0.25 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 23 S 2.41 27.83 4.69 -107.50 -0.50 27.32 16 24 C -0.66 -4.07 10.01 101.05 1.01 -3.06 16 25 O -0.93 -14.03 18.06 -57.83 -1.04 -15.07 16 26 O -0.93 -14.23 16.46 -57.83 -0.95 -15.18 16 27 H 0.07 0.26 6.39 -51.93 -0.33 -0.07 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.34 7.83 -51.93 -0.41 0.94 16 32 H 0.42 7.07 7.22 -34.47 -0.25 6.82 16 33 H 0.11 2.29 7.33 -52.49 -0.38 1.91 16 34 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 36 H 0.12 3.04 6.24 -52.48 -0.33 2.71 16 37 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 38 H 0.13 0.50 6.77 -51.92 -0.35 0.15 16 39 H 0.13 0.72 8.14 -51.92 -0.42 0.29 16 40 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -35.87 354.29 -10.40 -46.27 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.87 Total: 11.21 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: -1.47 Total: -44.29 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.56 Total: -39.10 kcal Atomic # 8 Polarization: -76.95 SS G_CDS: -3.89 Total: -80.84 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 89.68 SS G_CDS: -1.04 Total: 88.64 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.87 -10.40 -46.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423812887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.637 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds