Wall clock time and date at job start Wed Apr 1 2020 04:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47102 * 2 1 4 4 C 1.53000 * 109.47042 * 240.00024 * 2 1 3 5 5 N 1.46503 * 109.47099 * 179.97438 * 4 2 1 6 6 S 1.65595 * 120.00059 * 164.06014 * 5 4 2 7 7 O 1.42100 * 106.40337 * 307.72420 * 6 5 4 8 8 O 1.42108 * 106.40254 * 174.80947 * 6 5 4 9 9 C 1.76195 * 107.21874 * 61.26738 * 6 5 4 10 10 C 1.37642 * 120.12639 * 244.23987 * 9 6 5 11 11 C 1.38614 * 120.24624 * 180.29797 * 10 9 6 12 12 C 1.38660 * 120.49954 * 359.44596 * 11 10 9 13 13 C 1.37592 * 120.24785 * 0.55580 * 12 11 10 14 14 C 1.40697 * 120.12915 * 64.26764 * 9 6 5 15 15 C 1.41394 * 120.24366 * 359.94699 * 14 9 6 16 16 H 1.08005 * 120.00068 * 331.63981 * 15 14 9 17 17 C 1.39948 * 119.99840 * 151.62923 * 15 14 9 18 18 N 1.30818 * 119.99929 * 348.05672 * 17 15 14 19 19 Si 1.86806 * 119.99787 * 168.05794 * 17 15 14 20 20 H 1.48498 * 109.47142 * 60.00133 * 19 17 15 21 21 H 1.48505 * 109.47034 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.46930 * 300.00172 * 19 17 15 23 23 S 1.81401 * 109.46949 * 119.99988 * 2 1 3 24 24 C 1.81394 * 101.92400 * 304.99947 * 23 2 1 25 25 O 1.42094 * 108.57976 * 59.48990 * 23 2 1 26 26 O 1.42104 * 108.57376 * 190.51432 * 23 2 1 27 27 H 1.08999 * 109.47373 * 299.99793 * 1 2 3 28 28 H 1.09002 * 109.47198 * 59.99864 * 1 2 3 29 29 H 1.09011 * 109.47107 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47538 * 59.99987 * 4 2 1 31 31 H 1.09000 * 109.47500 * 299.99679 * 4 2 1 32 32 H 0.97004 * 119.99992 * 344.06076 * 5 4 2 33 33 H 1.08001 * 119.87725 * 0.02562 * 10 9 6 34 34 H 1.07997 * 119.74865 * 179.69820 * 11 10 9 35 35 H 1.08009 * 119.87285 * 180.30017 * 12 11 10 36 36 H 1.08005 * 120.12410 * 179.74837 * 13 12 11 37 37 H 0.97001 * 119.99764 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.46974 * 60.00213 * 24 23 2 39 39 H 1.09001 * 109.47284 * 180.02562 * 24 23 2 40 40 H 1.09010 * 109.47080 * 300.00273 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5050 -0.7207 -1.2496 6 16 4.3331 -1.7511 -2.2469 7 8 3.8120 -3.0505 -2.0035 8 8 5.7094 -1.4267 -2.1055 9 6 3.8927 -1.3405 -3.9028 10 6 3.2171 -2.2505 -4.6838 11 6 2.8749 -1.9324 -5.9888 12 6 3.1979 -0.6925 -6.5188 13 6 3.8731 0.2326 -5.7563 14 6 4.2309 -0.0815 -4.4320 15 6 4.9244 0.8615 -3.6389 16 1 4.8085 0.8533 -2.5651 17 6 5.7612 1.8052 -4.2452 18 7 6.0877 1.6760 -5.5054 19 14 6.4117 3.2495 -3.2550 20 1 7.2110 2.7446 -2.1099 21 1 7.2688 4.0979 -4.1217 22 1 5.2722 4.0545 -2.7466 23 16 2.1346 -0.8551 1.4812 24 6 1.2998 0.0576 2.8079 25 8 1.6408 -2.1874 1.4680 26 8 3.5341 -0.6349 1.5913 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0278 -0.0005 30 1 1.6766 -0.2075 -2.1393 31 1 1.6767 -1.7489 -1.2493 32 1 3.9899 -0.1168 -0.6656 33 1 2.9565 -3.2176 -4.2797 34 1 2.3491 -2.6543 -6.5961 35 1 2.9220 -0.4535 -7.5354 36 1 4.1273 1.1963 -6.1725 37 1 6.6674 2.3304 -5.9257 38 1 0.2202 -0.0210 2.6794 39 1 1.5828 -0.3636 3.7726 40 1 1.5949 1.1063 2.7690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423812887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:22 Heat of formation + Delta-G solvation = -156.938980 kcal Electronic energy + Delta-G solvation = -27512.640913 eV Core-core repulsion = 23545.393536 eV Total energy + Delta-G solvation = -3967.247377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.40633 -38.17201 -38.01367 -37.65418 -36.92810 -36.72992 -35.69137 -33.54369 -32.03752 -31.37295 -30.22925 -27.39283 -26.67999 -23.68594 -23.41106 -22.94086 -20.40672 -19.73392 -19.51426 -18.55709 -18.17554 -18.02446 -17.34505 -17.11906 -16.95262 -16.52570 -16.08016 -15.93086 -15.21840 -15.08592 -14.95216 -14.47200 -14.29557 -14.10256 -13.89106 -13.79376 -13.65949 -13.36422 -13.24184 -13.09768 -13.04267 -12.99832 -12.98753 -12.87938 -12.78954 -12.66188 -12.50164 -12.19865 -12.15665 -11.87223 -11.67634 -11.37552 -11.17402 -11.07277 -10.38263 -9.86291 -9.45037 -8.80773 -6.63379 -0.95142 -0.26144 0.50483 0.96888 1.36219 1.48043 1.52556 1.83789 2.16137 2.22825 2.61831 2.71379 2.93536 3.08695 3.39719 3.45395 3.74263 3.81935 4.09383 4.14707 4.26280 4.32802 4.38078 4.50186 4.60129 4.68747 4.72767 4.79371 4.93154 4.98701 5.00179 5.14159 5.27853 5.33853 5.49860 5.69786 5.80764 5.99639 6.05848 6.08195 6.46023 6.66007 6.81256 8.15032 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.004902 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.779712 B = 5710.668535 C = 6747.781975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.565 4.565 3 H 0.177 0.823 4 C 0.121 3.879 5 N -1.129 6.129 6 S 2.708 3.292 7 O -1.010 7.010 8 O -0.998 6.998 9 C -0.789 4.789 10 C -0.018 4.018 11 C -0.247 4.247 12 C -0.073 4.073 13 C -0.182 4.182 14 C 0.164 3.836 15 C -0.477 4.477 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.805 5.805 19 Si 0.973 3.027 20 H -0.266 1.266 21 H -0.262 1.262 22 H -0.238 1.238 23 S 2.383 3.617 24 C -0.630 4.630 25 O -0.982 6.982 26 O -0.984 6.984 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.426 0.574 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.296 0.704 38 H 0.163 0.837 39 H 0.139 0.861 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.720 6.321 11.293 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.677 4.677 3 H 0.195 0.805 4 C -0.006 4.006 5 N -0.892 5.892 6 S 2.806 3.194 7 O -1.001 7.001 8 O -0.988 6.988 9 C -0.885 4.885 10 C -0.037 4.037 11 C -0.267 4.267 12 C -0.092 4.092 13 C -0.202 4.202 14 C 0.159 3.841 15 C -0.505 4.505 16 H 0.111 0.889 17 C -0.179 4.179 18 N -0.429 5.429 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.186 1.186 22 H -0.161 1.161 23 S 2.571 3.429 24 C -0.784 4.784 25 O -0.979 6.979 26 O -0.981 6.981 27 H 0.133 0.867 28 H 0.114 0.886 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.263 0.737 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.107 0.893 38 H 0.182 0.818 39 H 0.157 0.843 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.481 4.878 11.348 17.560 hybrid contribution 0.292 1.398 -0.482 1.507 sum -12.189 6.276 10.866 17.494 Atomic orbital electron populations 1.21899 0.86523 1.05153 1.07263 1.30244 1.09294 1.14581 1.13602 0.80527 1.21299 0.77952 1.02095 0.99205 1.55682 1.15934 1.59291 1.58262 1.00623 0.72414 0.72192 0.74169 1.93436 1.81221 1.39232 1.86177 1.93491 1.33541 1.84630 1.87179 1.29947 1.30100 1.05073 1.23336 1.20577 0.92343 0.96404 0.94413 1.20890 1.10872 0.98781 0.96147 1.21268 0.95455 0.93714 0.98764 1.21564 1.02420 1.00443 0.95768 1.17293 0.85570 0.88370 0.92858 1.20173 1.21942 1.12416 0.95923 0.88879 1.26818 0.94428 1.00584 0.96077 1.69807 1.25999 1.33726 1.13361 0.85371 0.79760 0.76693 0.78965 1.19053 1.18570 1.16083 1.08704 0.76218 0.77488 0.80539 1.30096 1.16041 1.16091 1.16129 1.93540 1.82190 1.35330 1.86826 1.93534 1.31167 1.87050 1.86386 0.86749 0.88620 0.90664 0.87944 0.89714 0.73680 0.86174 0.85343 0.85702 0.86515 0.89273 0.81838 0.84266 0.82083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.90 71.98 0.64 -0.87 16 2 C -0.57 -9.98 2.88 30.59 0.09 -9.89 16 3 H 0.18 1.98 8.14 -2.39 -0.02 1.96 16 4 C 0.12 3.46 5.61 86.38 0.48 3.94 16 5 N -1.13 -42.37 4.36 -187.49 -0.82 -43.19 16 6 S 2.71 129.16 4.94 -56.49 -0.28 128.88 16 7 O -1.01 -50.26 16.56 -128.00 -2.12 -52.38 16 8 O -1.00 -54.65 16.63 -128.00 -2.13 -56.78 16 9 C -0.79 -38.68 5.86 22.73 0.13 -38.54 16 10 C -0.02 -0.80 9.53 22.22 0.21 -0.59 16 11 C -0.25 -10.30 10.05 22.46 0.23 -10.08 16 12 C -0.07 -3.15 10.02 22.22 0.22 -2.93 16 13 C -0.18 -8.93 8.66 22.73 0.20 -8.73 16 14 C 0.16 8.42 5.55 -21.29 -0.12 8.30 16 15 C -0.48 -24.20 7.67 23.46 0.18 -24.02 16 16 H 0.09 4.43 5.78 -2.91 -0.02 4.41 16 17 C 0.04 1.89 5.23 85.26 0.45 2.34 16 18 N -0.81 -39.89 10.88 21.83 0.24 -39.65 16 19 Si 0.97 36.14 29.58 68.60 2.03 38.17 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 22 H -0.24 -7.90 7.11 99.48 0.71 -7.20 16 23 S 2.38 52.93 4.69 -56.49 -0.27 52.66 16 24 C -0.63 -4.90 10.01 113.37 1.14 -3.77 16 25 O -0.98 -30.38 18.06 -127.37 -2.30 -32.68 16 26 O -0.98 -30.84 16.46 -127.37 -2.10 -32.94 16 27 H 0.11 0.18 6.39 -2.39 -0.02 0.17 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.08 2.54 7.83 -2.39 -0.02 2.52 16 32 H 0.43 14.83 7.22 -96.74 -0.70 14.13 16 33 H 0.12 5.07 7.33 -2.91 -0.02 5.05 16 34 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 35 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.12 5.81 6.24 -2.91 -0.02 5.79 16 37 H 0.30 13.14 8.30 -92.71 -0.77 12.37 16 38 H 0.16 0.26 6.77 -2.39 -0.02 0.24 16 39 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.16 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -83.15 354.29 -3.51 -86.66 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: 0.38 Total: 36.09 kcal Atomic # 6 Polarization: -88.68 SS G_CDS: 3.85 Total: -84.83 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -0.58 Total: -82.85 kcal Atomic # 8 Polarization: -166.13 SS G_CDS: -8.65 Total: -174.78 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.17 kcal Atomic # 16 Polarization: 182.09 SS G_CDS: -0.54 Total: 181.54 kcal Total: -83.15 -3.51 -86.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423812887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.280 kcal (2) G-P(sol) polarization free energy of solvation -83.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds