Wall clock time and date at job start Wed Apr 1 2020 04:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42101 * 110.54296 * 2 1 4 4 O 1.42097 * 110.54134 * 223.25108 * 2 1 3 5 5 C 1.76203 * 104.44995 * 111.62350 * 2 1 3 6 6 C 1.38354 * 119.45780 * 90.00056 * 5 2 1 7 7 C 1.38348 * 119.30857 * 180.02562 * 6 5 2 8 8 C 1.40050 * 118.28490 * 359.97438 * 7 6 5 9 9 C 1.47800 * 120.56123 * 179.97438 * 8 7 6 10 10 O 1.21558 * 119.99878 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99838 * 180.02562 * 9 8 7 12 12 C 1.39381 * 119.99787 * 184.86348 * 11 9 8 13 13 C 1.38628 * 119.58056 * 183.22218 * 12 11 9 14 14 C 1.40802 * 118.79047 * 179.72366 * 13 12 11 15 15 C 1.41548 * 120.99133 * 180.25164 * 14 13 12 16 16 H 1.08000 * 119.99592 * 154.51390 * 15 14 13 17 17 C 1.40031 * 120.00192 * 334.51745 * 15 14 13 18 18 N 1.30744 * 119.99637 * 162.95725 * 17 15 14 19 19 Si 1.86800 * 119.99812 * 342.95834 * 17 15 14 20 20 H 1.48494 * 109.47003 * 95.18038 * 19 17 15 21 21 H 1.48506 * 109.46709 * 215.17818 * 19 17 15 22 22 H 1.48497 * 109.47193 * 335.17644 * 19 17 15 23 23 C 1.41172 * 118.01191 * 0.27600 * 14 13 12 24 24 C 1.37590 * 119.02254 * 359.97438 * 23 14 13 25 25 N 1.32085 * 121.10761 * 0.02562 * 24 23 14 26 26 C 1.39544 * 118.87418 * 0.25508 * 8 7 6 27 27 N 1.31690 * 120.56635 * 359.49219 * 26 8 7 28 28 H 1.09004 * 109.46635 * 308.37534 * 1 2 3 29 29 H 1.08994 * 109.47242 * 68.37195 * 1 2 3 30 30 H 1.08994 * 109.46851 * 188.38089 * 1 2 3 31 31 H 1.08005 * 120.34587 * 0.02562 * 6 5 2 32 32 H 1.07995 * 120.86300 * 179.97438 * 7 6 5 33 33 H 0.96995 * 120.00181 * 4.85988 * 11 9 8 34 34 H 1.07992 * 120.60172 * 359.97438 * 13 12 11 35 35 H 0.96999 * 119.99126 * 180.02562 * 18 17 15 36 36 H 1.08000 * 120.49338 * 180.02562 * 23 14 13 37 37 H 1.07993 * 119.44735 * 179.97438 * 24 23 14 38 38 H 1.07995 * 119.71582 * 179.75476 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.4235 -1.9915 1.7548 7 6 2.7682 -2.4819 3.0017 8 6 2.9331 -1.5694 4.0513 9 6 3.3004 -2.0383 5.4039 10 8 3.4617 -3.2249 5.6129 11 7 3.4556 -1.1504 6.4059 12 6 3.9002 -1.5800 7.6551 13 6 3.9928 -0.6715 8.6981 14 6 4.4383 -1.1247 9.9546 15 6 4.5453 -0.2384 11.0530 16 1 4.4799 -0.6185 12.0618 17 6 4.7360 1.1311 10.8318 18 7 4.5056 1.9868 11.7930 19 14 5.3194 1.7353 9.1632 20 1 4.1469 2.1308 8.3424 21 1 6.2136 2.9067 9.3459 22 1 6.0615 0.6486 8.4751 23 6 4.7756 -2.4892 10.0858 24 6 4.6562 -3.3146 8.9915 25 7 4.2341 -2.8502 7.8292 26 6 2.7387 -0.2107 3.7998 27 7 2.4157 0.2076 2.5935 28 1 -0.3633 0.6380 0.8057 29 1 -0.3633 0.3788 -0.9553 30 1 -0.3633 -1.0166 0.1498 31 1 2.2884 -2.6654 0.9217 32 1 2.9067 -3.5409 3.1616 33 1 3.2580 -0.2124 6.2577 34 1 3.7241 0.3640 8.5507 35 1 4.6374 2.9355 11.6396 36 1 5.1214 -2.8798 11.0315 37 1 4.9127 -4.3595 9.0841 38 1 2.8584 0.5044 4.6002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433442070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:33 Heat of formation + Delta-G solvation = -41.904543 kcal Electronic energy + Delta-G solvation = -26591.573633 eV Core-core repulsion = 22526.163323 eV Total energy + Delta-G solvation = -4065.410310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.08590 -40.95817 -39.60807 -38.21110 -37.05354 -36.33643 -35.73999 -33.92675 -33.33290 -33.07227 -30.67755 -30.28607 -27.99402 -26.52442 -25.06386 -24.28879 -23.44987 -21.76640 -20.44154 -19.68896 -19.67128 -18.86604 -18.25958 -17.67238 -17.28731 -17.16367 -16.67473 -16.50162 -16.44327 -16.24218 -15.99084 -15.60086 -15.24166 -14.96717 -14.77345 -14.48733 -14.43036 -14.30503 -13.94385 -13.91784 -13.52520 -13.20213 -13.09334 -12.80174 -12.71064 -12.65608 -12.56183 -11.96263 -11.87221 -11.77071 -11.53067 -11.30024 -11.25636 -10.83612 -10.78467 -10.20681 -9.79124 -9.09873 -9.02474 -6.76608 -1.17414 -0.91007 -0.12728 0.50076 0.72340 1.20442 1.35508 1.45853 1.54653 1.66189 1.74163 2.05382 2.33068 2.63898 2.75739 2.93027 3.18399 3.43129 3.49369 3.50032 3.67844 3.76036 3.98412 4.11739 4.25383 4.28361 4.37993 4.51729 4.54718 4.57478 4.70579 4.75033 4.97687 5.07270 5.09775 5.23605 5.40678 5.62646 5.92781 6.11993 6.23419 6.28310 6.47129 6.63904 6.90905 7.57795 8.03444 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017274 B = 0.002589 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.499041 B =10814.457425 C =12096.027029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.616 4.616 2 S 2.513 3.487 3 O -0.960 6.960 4 O -0.954 6.954 5 C -0.421 4.421 6 C -0.086 4.086 7 C -0.032 4.032 8 C -0.140 4.140 9 C 0.548 3.452 10 O -0.497 6.497 11 N -0.648 5.648 12 C 0.365 3.635 13 C -0.327 4.327 14 C 0.111 3.889 15 C -0.462 4.462 16 H 0.068 0.932 17 C 0.052 3.948 18 N -0.826 5.826 19 Si 0.964 3.036 20 H -0.241 1.241 21 H -0.278 1.278 22 H -0.259 1.259 23 C -0.282 4.282 24 C 0.130 3.870 25 N -0.575 5.575 26 C 0.111 3.889 27 N -0.413 5.413 28 H 0.149 0.851 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.196 0.804 32 H 0.168 0.832 33 H 0.424 0.576 34 H 0.118 0.882 35 H 0.300 0.700 36 H 0.122 0.878 37 H 0.162 0.838 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.024 -1.568 -23.319 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.771 4.771 2 S 2.691 3.309 3 O -0.957 6.957 4 O -0.951 6.951 5 C -0.637 4.637 6 C -0.106 4.106 7 C -0.059 4.059 8 C -0.145 4.145 9 C 0.334 3.666 10 O -0.369 6.369 11 N -0.296 5.296 12 C 0.137 3.863 13 C -0.353 4.353 14 C 0.102 3.898 15 C -0.492 4.492 16 H 0.087 0.913 17 C -0.166 4.166 18 N -0.451 5.451 19 Si 0.787 3.213 20 H -0.165 1.165 21 H -0.204 1.204 22 H -0.184 1.184 23 C -0.305 4.305 24 C -0.021 4.021 25 N -0.295 5.295 26 C -0.050 4.050 27 N -0.121 5.121 28 H 0.167 0.833 29 H 0.182 0.818 30 H 0.180 0.820 31 H 0.213 0.787 32 H 0.185 0.815 33 H 0.263 0.737 34 H 0.135 0.865 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.180 0.820 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.491 -1.643 -24.533 26.356 hybrid contribution 0.263 0.265 2.019 2.053 sum -9.228 -1.378 -22.514 24.371 Atomic orbital electron populations 1.29987 1.17747 1.14801 1.14547 1.05342 0.80713 0.73191 0.71675 1.93565 1.79716 1.37415 1.85018 1.93589 1.80063 1.62394 1.59077 1.33989 1.09628 0.99814 1.20278 1.22368 0.94171 0.95214 0.98864 1.22113 0.91002 1.01763 0.91002 1.21227 1.02662 0.96657 0.93993 1.18526 0.77755 0.85968 0.84338 1.90870 1.46642 1.16530 1.82875 1.43350 1.64957 1.12553 1.08729 1.18090 0.93289 0.90379 0.84497 1.21243 1.19538 0.99610 0.94884 1.17874 0.87044 0.93347 0.91489 1.19539 1.43770 0.91795 0.94076 0.91345 1.26897 0.91328 0.96182 1.02221 1.69646 1.33883 1.05202 1.36328 0.85521 0.79911 0.77784 0.78054 1.16539 1.20448 1.18359 1.22085 1.12807 0.94918 1.00677 1.22369 0.93109 0.99582 0.87067 1.67403 1.22259 1.13573 1.26313 1.23551 0.93137 0.93017 0.95334 1.67848 1.08143 1.37109 0.99036 0.83256 0.81794 0.82026 0.78701 0.81461 0.73660 0.86454 0.88881 0.85996 0.82043 0.79605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -0.86 10.80 113.37 1.22 0.36 16 2 S 2.51 31.97 5.86 -56.49 -0.33 31.64 16 3 O -0.96 -21.26 17.72 -127.65 -2.26 -23.52 16 4 O -0.95 -16.30 17.09 -127.65 -2.18 -18.49 16 5 C -0.42 -7.20 6.53 84.71 0.55 -6.65 16 6 C -0.09 -1.28 9.49 22.32 0.21 -1.07 16 7 C -0.03 -0.62 9.72 22.74 0.22 -0.40 16 8 C -0.14 -3.37 5.89 -19.99 -0.12 -3.49 16 9 C 0.55 17.83 7.73 86.77 0.67 18.50 16 10 O -0.50 -19.84 14.69 -3.90 -0.06 -19.89 16 11 N -0.65 -21.81 5.34 -311.31 -1.66 -23.48 16 12 C 0.37 15.69 7.41 132.79 0.98 16.67 16 13 C -0.33 -14.76 7.01 22.99 0.16 -14.60 16 14 C 0.11 5.44 5.24 -21.12 -0.11 5.33 16 15 C -0.46 -24.25 9.66 23.52 0.23 -24.03 16 16 H 0.07 3.84 8.06 -2.91 -0.02 3.81 16 17 C 0.05 2.60 5.45 85.29 0.47 3.06 16 18 N -0.83 -41.78 13.92 21.84 0.30 -41.47 16 19 Si 0.96 39.05 24.41 68.60 1.67 40.72 16 20 H -0.24 -8.55 6.69 99.48 0.67 -7.89 16 21 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.26 -11.14 6.64 99.48 0.66 -10.48 16 23 C -0.28 -12.69 9.90 22.84 0.23 -12.47 16 24 C 0.13 5.55 11.15 84.50 0.94 6.49 16 25 N -0.58 -26.17 7.86 -193.57 -1.52 -27.69 16 26 C 0.11 2.37 10.71 85.03 0.91 3.28 16 27 N -0.41 -8.81 10.02 -192.21 -1.93 -10.73 16 28 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.16 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.16 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H 0.20 1.54 7.55 -2.91 -0.02 1.52 16 32 H 0.17 3.01 7.74 -2.91 -0.02 2.98 16 33 H 0.42 10.96 6.77 -92.71 -0.63 10.33 16 34 H 0.12 4.94 4.16 -2.91 -0.01 4.93 16 35 H 0.30 13.48 8.29 -92.71 -0.77 12.71 16 36 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 37 H 0.16 5.71 8.06 -2.91 -0.02 5.69 16 38 H 0.19 3.08 6.43 -2.91 -0.02 3.07 16 Total: -1.00 -80.18 343.60 -0.96 -81.14 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.43 Total: 20.77 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 6.57 Total: -9.00 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -4.81 Total: -103.37 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: -4.50 Total: -61.90 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.67 Total: 40.72 kcal Atomic # 16 Polarization: 31.97 SS G_CDS: -0.33 Total: 31.64 kcal Total: -80.18 -0.96 -81.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433442070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.239 kcal (2) G-P(sol) polarization free energy of solvation -80.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds