Wall clock time and date at job start Wed Apr 1 2020 04:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42100 * 110.54530 * 2 1 4 4 O 1.42097 * 110.54558 * 223.24528 * 2 1 3 5 5 C 1.76202 * 104.44854 * 111.62502 * 2 1 3 6 6 C 1.38631 * 120.46974 * 246.30252 * 5 2 1 7 7 C 1.38588 * 118.49217 * 179.74636 * 6 5 2 8 8 C 1.38611 * 119.35318 * 0.25459 * 7 6 5 9 9 N 1.31490 * 120.90238 * 359.97438 * 8 7 6 10 10 C 1.32764 * 121.64365 * 0.02562 * 9 8 7 11 11 C 1.48118 * 119.72546 * 180.02562 * 10 9 8 12 12 O 1.21514 * 120.00215 * 174.38334 * 11 10 9 13 13 N 1.34780 * 120.00178 * 354.38054 * 11 10 9 14 14 C 1.39167 * 120.00127 * 185.19484 * 13 11 10 15 15 C 1.39701 * 119.57418 * 185.39903 * 14 13 11 16 16 C 1.38649 * 119.48892 * 179.97438 * 15 14 13 17 17 C 1.38353 * 118.67541 * 0.02562 * 16 15 14 18 18 C 1.40579 * 119.13106 * 359.97438 * 17 16 15 19 19 C 1.41342 * 119.78524 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99742 * 354.97148 * 19 18 17 21 21 C 1.40027 * 119.99747 * 174.97568 * 19 18 17 22 22 N 1.30737 * 120.00189 * 5.16467 * 21 19 18 23 23 Si 1.86798 * 119.99468 * 185.16468 * 21 19 18 24 24 H 1.48497 * 109.47630 * 95.00046 * 23 21 19 25 25 H 1.48503 * 109.47081 * 215.00027 * 23 21 19 26 26 H 1.48500 * 109.47393 * 334.99342 * 23 21 19 27 27 N 1.31921 * 119.57768 * 5.12371 * 14 13 11 28 28 H 1.08997 * 109.47426 * 313.99203 * 1 2 3 29 29 H 1.09001 * 109.46716 * 73.98847 * 1 2 3 30 30 H 1.08996 * 109.47092 * 193.98945 * 1 2 3 31 31 H 1.08002 * 120.74975 * 0.02562 * 6 5 2 32 32 H 1.07999 * 120.32531 * 180.27495 * 7 6 5 33 33 H 1.07994 * 119.54636 * 179.97438 * 8 7 6 34 34 H 0.96999 * 119.99887 * 5.20262 * 13 11 10 35 35 H 1.07995 * 120.25442 * 359.95974 * 15 14 13 36 36 H 1.08001 * 120.66320 * 180.02562 * 16 15 14 37 37 H 1.07995 * 120.43514 * 179.97438 * 17 16 15 38 38 H 0.97000 * 119.99962 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9116 5 6 2.2536 -0.6288 1.5862 6 6 2.8940 0.1816 2.5109 7 6 3.2162 -0.3536 3.7480 8 6 2.8963 -1.6744 4.0210 9 7 2.2927 -2.4224 3.1238 10 6 1.9668 -1.9485 1.9272 11 6 1.2870 -2.8287 0.9489 12 8 0.8950 -2.3742 -0.1076 13 7 1.1031 -4.1339 1.2306 14 6 0.5628 -4.9836 0.2700 15 6 0.2706 -6.3076 0.6067 16 6 -0.2681 -7.1526 -0.3516 17 6 -0.5006 -6.6540 -1.6210 18 6 -0.1852 -5.3123 -1.8977 19 6 -0.4176 -4.7885 -3.1897 20 1 -0.7594 -5.4378 -3.9822 21 6 -0.2045 -3.4277 -3.4422 22 7 0.3048 -2.6623 -2.5127 23 14 -0.6480 -2.7063 -5.1072 24 1 -2.0100 -2.1180 -5.0450 25 1 0.3318 -1.6493 -5.4655 26 1 -0.6180 -3.7778 -6.1349 27 7 0.3281 -4.5271 -0.9452 28 1 -0.3634 0.7137 0.7393 29 1 -0.3633 0.2835 -0.9878 30 1 -0.3633 -0.9971 0.2484 31 1 3.1323 1.2080 2.2741 32 1 3.7114 0.2525 4.4921 33 1 3.1463 -2.0948 4.9839 34 1 1.3472 -4.4808 2.1029 35 1 0.4631 -6.6702 1.6055 36 1 -0.5016 -8.1794 -0.1118 37 1 -0.9190 -7.2873 -2.3893 38 1 0.4520 -1.7196 -2.6875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433546551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:47 Heat of formation + Delta-G solvation = 22.087676 kcal Electronic energy + Delta-G solvation = -29013.806277 eV Core-core repulsion = 24951.170878 eV Total energy + Delta-G solvation = -4062.635399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.69332 -39.10868 -37.63259 -36.49127 -35.38586 -34.39135 -33.23240 -32.68953 -31.75934 -30.30842 -29.22784 -28.83885 -25.76112 -24.82763 -24.12540 -22.15795 -21.25714 -19.90586 -18.93058 -18.26747 -17.41344 -17.16167 -16.69752 -16.07568 -15.67428 -15.31317 -15.07935 -15.05344 -14.64122 -14.44539 -14.09862 -13.69186 -13.57365 -13.45903 -13.08600 -12.85504 -12.75275 -12.51666 -11.98232 -11.89442 -11.61982 -11.41359 -11.19057 -11.07860 -10.94123 -10.63907 -10.50678 -10.44936 -10.31179 -9.94548 -9.86489 -9.72443 -9.49431 -9.37906 -9.01747 -7.96768 -7.30745 -6.99986 -6.12897 -4.36725 0.18601 0.54755 0.80880 2.63436 2.98407 3.14789 3.20105 3.22018 3.23054 3.29314 3.37915 3.88197 4.08257 4.09447 4.14217 4.43822 4.58068 4.78480 4.85674 4.94359 5.02123 5.18694 5.30044 5.48981 5.65500 5.68157 6.01898 6.10803 6.20843 6.23692 6.47999 6.61648 6.80711 6.84396 7.25179 7.37854 7.54265 7.57517 7.80967 7.97880 8.14330 8.42076 8.64693 8.94648 9.07074 10.20866 10.50298 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.005546 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.684604 B = 5047.615623 C = 7219.941521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.633 4.633 2 S 2.505 3.495 3 O -0.967 6.967 4 O -0.876 6.876 5 C -0.672 4.672 6 C 0.012 3.988 7 C -0.183 4.183 8 C 0.142 3.858 9 N -0.474 5.474 10 C 0.187 3.813 11 C 0.510 3.490 12 O -0.381 6.381 13 N -0.635 5.635 14 C 0.367 3.633 15 C -0.353 4.353 16 C -0.036 4.036 17 C -0.302 4.302 18 C 0.270 3.730 19 C -0.421 4.421 20 H 0.082 0.918 21 C 0.056 3.944 22 N -0.641 5.641 23 Si 0.889 3.111 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.263 1.263 27 N -0.469 5.469 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.154 0.846 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.168 0.832 34 H 0.412 0.588 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 7.658 12.442 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.784 4.784 2 S 2.679 3.321 3 O -0.964 6.964 4 O -0.873 6.873 5 C -0.756 4.756 6 C -0.014 4.014 7 C -0.204 4.204 8 C -0.016 4.016 9 N -0.187 5.187 10 C 0.046 3.954 11 C 0.290 3.710 12 O -0.246 6.246 13 N -0.281 5.281 14 C 0.128 3.872 15 C -0.379 4.379 16 C -0.060 4.060 17 C -0.325 4.325 18 C 0.146 3.854 19 C -0.451 4.451 20 H 0.100 0.900 21 C -0.174 4.174 22 N -0.259 5.259 23 Si 0.713 3.287 24 H -0.198 1.198 25 H -0.201 1.201 26 H -0.187 1.187 27 N -0.188 5.188 28 H 0.128 0.872 29 H 0.148 0.852 30 H 0.172 0.828 31 H 0.177 0.823 32 H 0.165 0.835 33 H 0.185 0.815 34 H 0.248 0.752 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.131 8.509 11.046 14.291 hybrid contribution -0.289 -0.210 0.804 0.880 sum 2.842 8.300 11.850 14.744 Atomic orbital electron populations 1.30308 1.24309 1.12942 1.10806 1.05404 0.78765 0.73978 0.73921 1.93508 1.78782 1.38119 1.86033 1.93771 1.76754 1.58935 1.57872 1.32016 1.13797 1.03617 1.26218 1.21456 0.89006 0.99801 0.91163 1.22420 1.02351 0.97444 0.98179 1.23129 0.90087 0.90500 0.97862 1.67762 1.11491 1.37817 1.01616 1.21487 0.91836 0.90448 0.91620 1.18241 0.82911 0.83515 0.86305 1.91203 1.42337 1.71731 1.19320 1.42962 1.61458 1.07323 1.16385 1.18531 0.92978 0.86342 0.89324 1.20452 1.22599 0.94674 1.00128 1.20551 0.95444 0.96801 0.93226 1.21629 1.15693 0.98280 0.96906 1.18329 0.87951 0.87101 0.92051 1.19567 1.37262 0.93692 0.94573 0.89996 1.26142 0.95443 0.97961 0.97872 1.70265 1.20038 1.05538 1.30097 0.86605 0.78848 0.79705 0.83506 1.19775 1.20124 1.18697 1.68624 1.18383 1.34582 0.97226 0.87214 0.85195 0.82818 0.82329 0.83547 0.81515 0.75243 0.88990 0.88599 0.88552 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -9.08 10.07 101.05 1.02 -8.06 16 2 S 2.51 41.17 5.14 -107.50 -0.55 40.61 16 3 O -0.97 -16.30 16.83 -57.54 -0.97 -17.26 16 4 O -0.88 -18.63 14.71 -67.46 -0.99 -19.63 16 5 C -0.67 -10.05 5.63 -39.04 -0.22 -10.27 16 6 C 0.01 0.14 9.61 -39.31 -0.38 -0.24 16 7 C -0.18 -1.67 10.11 -39.31 -0.40 -2.07 16 8 C 0.14 1.43 11.18 -17.56 -0.20 1.24 16 9 N -0.47 -6.61 9.56 -9.80 -0.09 -6.71 16 10 C 0.19 3.06 6.74 -83.02 -0.56 2.50 16 11 C 0.51 10.25 7.37 -12.20 -0.09 10.16 16 12 O -0.38 -8.53 4.93 -19.67 -0.10 -8.63 16 13 N -0.64 -12.80 5.37 -12.18 -0.07 -12.87 16 14 C 0.37 8.81 7.41 -155.05 -1.15 7.66 16 15 C -0.35 -7.84 9.96 -38.88 -0.39 -8.23 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.30 -7.46 9.83 -38.66 -0.38 -7.84 16 18 C 0.27 7.40 6.55 -85.00 -0.56 6.84 16 19 C -0.42 -11.28 9.13 -37.73 -0.34 -11.63 16 20 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 21 C 0.06 1.43 5.49 -17.35 -0.10 1.34 16 22 N -0.64 -16.88 9.07 55.55 0.50 -16.37 16 23 Si 0.89 18.91 29.56 -169.99 -5.03 13.88 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 27 N -0.47 -12.73 5.76 -10.27 -0.06 -12.79 16 28 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 30 H 0.15 2.56 5.54 -51.93 -0.29 2.27 16 31 H 0.16 1.55 7.32 -52.49 -0.38 1.17 16 32 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.41 6.95 8.04 -40.82 -0.33 6.62 16 35 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.27 6.70 8.12 -40.82 -0.33 6.37 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -34.75 334.91 -9.94 -44.69 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -3.50 Total: 9.82 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -4.14 Total: -19.80 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.29 Total: -48.73 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -2.06 Total: -45.52 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Atomic # 16 Polarization: 41.17 SS G_CDS: -0.55 Total: 40.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.75 -9.94 -44.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433546551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.776 kcal (2) G-P(sol) polarization free energy of solvation -34.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds