Wall clock time and date at job start Wed Apr 1 2020 04:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42100 * 110.54530 * 2 1 4 4 O 1.42097 * 110.54558 * 223.24528 * 2 1 3 5 5 C 1.76202 * 104.44854 * 111.62502 * 2 1 3 6 6 C 1.38631 * 120.46974 * 246.30252 * 5 2 1 7 7 C 1.38588 * 118.49217 * 179.74636 * 6 5 2 8 8 C 1.38611 * 119.35318 * 0.25459 * 7 6 5 9 9 N 1.31490 * 120.90238 * 359.97438 * 8 7 6 10 10 C 1.32764 * 121.64365 * 0.02562 * 9 8 7 11 11 C 1.48118 * 119.72546 * 180.02562 * 10 9 8 12 12 O 1.21514 * 120.00215 * 174.38334 * 11 10 9 13 13 N 1.34780 * 120.00178 * 354.38054 * 11 10 9 14 14 C 1.39167 * 120.00127 * 185.19484 * 13 11 10 15 15 C 1.39701 * 119.57418 * 185.39903 * 14 13 11 16 16 C 1.38649 * 119.48892 * 179.97438 * 15 14 13 17 17 C 1.38353 * 118.67541 * 0.02562 * 16 15 14 18 18 C 1.40579 * 119.13106 * 359.97438 * 17 16 15 19 19 C 1.41342 * 119.78524 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99742 * 354.97148 * 19 18 17 21 21 C 1.40027 * 119.99747 * 174.97568 * 19 18 17 22 22 N 1.30737 * 120.00189 * 5.16467 * 21 19 18 23 23 Si 1.86798 * 119.99468 * 185.16468 * 21 19 18 24 24 H 1.48497 * 109.47630 * 95.00046 * 23 21 19 25 25 H 1.48503 * 109.47081 * 215.00027 * 23 21 19 26 26 H 1.48500 * 109.47393 * 334.99342 * 23 21 19 27 27 N 1.31921 * 119.57768 * 5.12371 * 14 13 11 28 28 H 1.08997 * 109.47426 * 313.99203 * 1 2 3 29 29 H 1.09001 * 109.46716 * 73.98847 * 1 2 3 30 30 H 1.08996 * 109.47092 * 193.98945 * 1 2 3 31 31 H 1.08002 * 120.74975 * 0.02562 * 6 5 2 32 32 H 1.07999 * 120.32531 * 180.27495 * 7 6 5 33 33 H 1.07994 * 119.54636 * 179.97438 * 8 7 6 34 34 H 0.96999 * 119.99887 * 5.20262 * 13 11 10 35 35 H 1.07995 * 120.25442 * 359.95974 * 15 14 13 36 36 H 1.08001 * 120.66320 * 180.02562 * 16 15 14 37 37 H 1.07995 * 120.43514 * 179.97438 * 17 16 15 38 38 H 0.97000 * 119.99962 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9116 5 6 2.2536 -0.6288 1.5862 6 6 2.8940 0.1816 2.5109 7 6 3.2162 -0.3536 3.7480 8 6 2.8963 -1.6744 4.0210 9 7 2.2927 -2.4224 3.1238 10 6 1.9668 -1.9485 1.9272 11 6 1.2870 -2.8287 0.9489 12 8 0.8950 -2.3742 -0.1076 13 7 1.1031 -4.1339 1.2306 14 6 0.5628 -4.9836 0.2700 15 6 0.2706 -6.3076 0.6067 16 6 -0.2681 -7.1526 -0.3516 17 6 -0.5006 -6.6540 -1.6210 18 6 -0.1852 -5.3123 -1.8977 19 6 -0.4176 -4.7885 -3.1897 20 1 -0.7594 -5.4378 -3.9822 21 6 -0.2045 -3.4277 -3.4422 22 7 0.3048 -2.6623 -2.5127 23 14 -0.6480 -2.7063 -5.1072 24 1 -2.0100 -2.1180 -5.0450 25 1 0.3318 -1.6493 -5.4655 26 1 -0.6180 -3.7778 -6.1349 27 7 0.3281 -4.5271 -0.9452 28 1 -0.3634 0.7137 0.7393 29 1 -0.3633 0.2835 -0.9878 30 1 -0.3633 -0.9971 0.2484 31 1 3.1323 1.2080 2.2741 32 1 3.7114 0.2525 4.4921 33 1 3.1463 -2.0948 4.9839 34 1 1.3472 -4.4808 2.1029 35 1 0.4631 -6.6702 1.6055 36 1 -0.5016 -8.1794 -0.1118 37 1 -0.9190 -7.2873 -2.3893 38 1 0.4520 -1.7196 -2.6875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433546551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:46 Heat of formation + Delta-G solvation = -2.796378 kcal Electronic energy + Delta-G solvation = -29014.885331 eV Core-core repulsion = 24951.170878 eV Total energy + Delta-G solvation = -4063.714453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.86040 -40.55767 -39.28121 -37.85303 -36.77804 -36.05419 -34.93618 -33.79179 -32.81962 -32.15951 -30.87484 -30.14947 -27.54333 -26.12980 -25.06785 -23.76445 -23.03539 -21.43170 -20.18750 -19.75467 -18.91420 -18.36695 -18.09540 -17.48025 -16.93824 -16.56662 -16.48654 -16.41410 -16.23457 -16.07355 -15.51742 -15.23692 -14.84976 -14.71937 -14.49997 -14.17188 -14.07562 -13.72231 -13.68033 -13.40214 -12.97148 -12.89664 -12.73204 -12.68406 -12.49347 -12.37229 -12.26136 -11.75013 -11.72268 -11.43175 -11.33406 -11.04926 -10.82024 -10.71328 -10.47546 -9.84649 -9.14595 -8.80414 -7.98593 -6.33389 -0.89268 -0.63577 -0.12001 0.94711 1.27829 1.43309 1.53385 1.55030 1.86531 1.97868 2.02313 2.31327 2.60676 2.92984 3.00535 3.06771 3.36097 3.67829 3.76423 3.87508 4.08430 4.10997 4.14818 4.32141 4.39505 4.41353 4.69657 4.76980 4.86798 4.90377 4.98581 5.00415 5.11080 5.38153 5.40702 5.71082 5.81964 5.96275 6.16117 6.34440 6.48062 6.68468 6.84833 7.12053 7.37011 8.34776 8.64095 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.005546 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.684604 B = 5047.615623 C = 7219.941521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.624 4.624 2 S 2.510 3.490 3 O -0.979 6.979 4 O -0.936 6.936 5 C -0.677 4.677 6 C 0.000 4.000 7 C -0.152 4.152 8 C 0.142 3.858 9 N -0.487 5.487 10 C 0.165 3.835 11 C 0.495 3.505 12 O -0.406 6.406 13 N -0.632 5.632 14 C 0.348 3.652 15 C -0.346 4.346 16 C -0.033 4.033 17 C -0.327 4.327 18 C 0.238 3.762 19 C -0.459 4.459 20 H 0.082 0.918 21 C 0.011 3.989 22 N -0.665 5.665 23 Si 0.958 3.042 24 H -0.262 1.262 25 H -0.276 1.276 26 H -0.259 1.259 27 N -0.499 5.499 28 H 0.149 0.851 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.177 0.823 32 H 0.199 0.801 33 H 0.215 0.785 34 H 0.425 0.575 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.103 0.897 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 8.553 15.621 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.776 4.776 2 S 2.689 3.311 3 O -0.976 6.976 4 O -0.933 6.933 5 C -0.766 4.766 6 C -0.026 4.026 7 C -0.172 4.172 8 C -0.016 4.016 9 N -0.200 5.200 10 C 0.025 3.975 11 C 0.277 3.723 12 O -0.271 6.271 13 N -0.280 5.280 14 C 0.109 3.891 15 C -0.372 4.372 16 C -0.057 4.057 17 C -0.350 4.350 18 C 0.113 3.887 19 C -0.490 4.490 20 H 0.101 0.899 21 C -0.216 4.216 22 N -0.283 5.283 23 Si 0.780 3.220 24 H -0.187 1.187 25 H -0.201 1.201 26 H -0.182 1.182 27 N -0.219 5.219 28 H 0.167 0.833 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.194 0.806 32 H 0.216 0.784 33 H 0.232 0.768 34 H 0.263 0.737 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.122 0.878 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.787 9.407 14.240 17.482 hybrid contribution -0.412 -0.499 0.139 0.662 sum 3.375 8.908 14.379 17.248 Atomic orbital electron populations 1.30156 1.22370 1.12748 1.12338 1.04801 0.79263 0.72966 0.74044 1.93476 1.79447 1.38124 1.86553 1.93708 1.78379 1.60459 1.60778 1.31609 1.15510 1.03625 1.25834 1.21852 0.88642 1.00387 0.91687 1.23011 0.99434 0.97232 0.97569 1.24017 0.88195 0.90896 0.98477 1.67723 1.12243 1.38882 1.01135 1.20798 0.94137 0.90264 0.92292 1.18901 0.82704 0.83708 0.87000 1.91205 1.42991 1.72238 1.20709 1.42926 1.61433 1.07397 1.16241 1.19014 0.92876 0.87840 0.89338 1.20901 1.20704 0.93905 1.01659 1.20991 0.94013 0.98607 0.92128 1.21797 1.16924 0.97732 0.98508 1.18794 0.88623 0.88510 0.92738 1.19826 1.39377 0.94793 0.94989 0.89937 1.26889 0.95302 0.97920 1.01524 1.70417 1.20569 1.05573 1.31781 0.85552 0.78770 0.78730 0.78978 1.18686 1.20061 1.18242 1.68602 1.19339 1.35529 0.98420 0.83290 0.84888 0.84975 0.80551 0.78377 0.76840 0.73682 0.85458 0.84690 0.87842 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -18.38 10.07 113.37 1.14 -17.24 16 2 S 2.51 84.97 5.14 -56.49 -0.29 84.68 16 3 O -0.98 -33.05 16.83 -127.65 -2.15 -35.20 16 4 O -0.94 -42.45 14.71 -118.16 -1.74 -44.19 16 5 C -0.68 -19.82 5.63 22.62 0.13 -19.69 16 6 C 0.00 0.00 9.61 22.45 0.22 0.22 16 7 C -0.15 -1.97 10.11 22.44 0.23 -1.75 16 8 C 0.14 2.20 11.18 84.83 0.95 3.15 16 9 N -0.49 -12.50 9.56 -184.93 -1.77 -14.27 16 10 C 0.17 5.36 6.74 41.88 0.28 5.64 16 11 C 0.49 20.59 7.37 86.87 0.64 21.23 16 12 O -0.41 -19.15 4.93 20.16 0.10 -19.05 16 13 N -0.63 -25.93 5.37 -310.75 -1.67 -27.60 16 14 C 0.35 17.07 7.41 133.29 0.99 18.06 16 15 C -0.35 -15.09 9.96 22.72 0.23 -14.86 16 16 C -0.03 -1.46 10.15 22.40 0.23 -1.23 16 17 C -0.33 -16.52 9.83 22.87 0.22 -16.29 16 18 C 0.24 13.67 6.55 40.20 0.26 13.93 16 19 C -0.46 -25.97 9.13 23.47 0.21 -25.75 16 20 H 0.08 4.42 7.85 -2.91 -0.02 4.39 16 21 C 0.01 0.60 5.49 85.29 0.47 1.07 16 22 N -0.67 -37.01 9.07 21.84 0.20 -36.81 16 23 Si 0.96 40.53 29.56 68.60 2.03 42.55 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 25 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 27 N -0.50 -28.33 5.76 -186.40 -1.07 -29.40 16 28 H 0.15 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.13 3.78 8.14 -2.39 -0.02 3.76 16 30 H 0.13 4.67 5.54 -2.39 -0.01 4.65 16 31 H 0.18 2.90 7.32 -2.91 -0.02 2.88 16 32 H 0.20 0.57 8.06 -2.91 -0.02 0.54 16 33 H 0.22 1.22 8.06 -2.91 -0.02 1.20 16 34 H 0.42 14.20 8.04 -92.71 -0.75 13.46 16 35 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.14 4.77 8.06 -2.91 -0.02 4.74 16 37 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.27 14.29 8.12 -92.71 -0.75 13.54 16 Total: -1.00 -81.95 334.91 0.24 -81.71 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.41 Total: 31.10 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 6.19 Total: -33.53 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -4.31 Total: -108.08 kcal Atomic # 8 Polarization: -94.65 SS G_CDS: -3.79 Total: -98.44 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 16 Polarization: 84.97 SS G_CDS: -0.29 Total: 84.68 kcal Total: -81.95 0.24 -81.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433546551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.914 kcal (2) G-P(sol) polarization free energy of solvation -81.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds