Wall clock time and date at job start Wed Apr 1 2020 04:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47235 * 2 1 4 4 C 1.52997 * 109.47016 * 120.00097 * 2 1 3 5 5 S 1.81411 * 109.47233 * 185.00089 * 4 2 1 6 6 C 1.81396 * 101.92145 * 179.97438 * 5 4 2 7 7 O 1.42102 * 108.57497 * 294.48490 * 5 4 2 8 8 O 1.42093 * 108.57513 * 65.51184 * 5 4 2 9 9 N 1.46505 * 109.47337 * 240.00002 * 2 1 3 10 10 S 1.65590 * 120.00127 * 93.90484 * 9 2 1 11 11 O 1.42103 * 106.40354 * 309.07097 * 10 9 2 12 12 O 1.42101 * 106.40355 * 176.15042 * 10 9 2 13 13 C 1.76199 * 107.21762 * 62.61168 * 10 9 2 14 14 C 1.37640 * 120.12936 * 90.21884 * 13 10 9 15 15 C 1.38619 * 120.24891 * 180.32015 * 14 13 10 16 16 C 1.38658 * 120.49822 * 359.67299 * 15 14 13 17 17 C 1.37592 * 120.25111 * 359.97438 * 16 15 14 18 18 C 1.40699 * 120.12735 * 269.90920 * 13 10 9 19 19 C 1.41393 * 120.24273 * 359.97438 * 18 13 10 20 20 H 1.07999 * 120.00371 * 35.56975 * 19 18 13 21 21 C 1.39948 * 119.99725 * 215.56945 * 19 18 13 22 22 N 1.30829 * 119.99935 * 189.91997 * 21 19 18 23 23 Si 1.86801 * 120.00283 * 9.92273 * 21 19 18 24 24 H 1.48502 * 109.46894 * 266.58347 * 23 21 19 25 25 H 1.48501 * 109.46884 * 26.58304 * 23 21 19 26 26 H 1.48498 * 109.47181 * 146.58423 * 23 21 19 27 27 H 1.09002 * 109.47595 * 300.00415 * 1 2 3 28 28 H 1.09008 * 109.47311 * 60.00312 * 1 2 3 29 29 H 1.09006 * 109.47379 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47359 * 304.99722 * 4 2 1 31 31 H 1.09000 * 109.47756 * 65.00056 * 4 2 1 32 32 H 1.09006 * 109.47254 * 59.99796 * 6 5 4 33 33 H 1.08996 * 109.47214 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47488 * 300.00020 * 6 5 4 35 35 H 0.96997 * 119.99571 * 273.90749 * 9 2 1 36 36 H 1.08000 * 119.87626 * 0.02562 * 14 13 10 37 37 H 1.08001 * 119.74904 * 179.68932 * 15 14 13 38 38 H 1.08001 * 119.87482 * 180.02562 * 16 15 14 39 39 H 1.08003 * 120.13154 * 180.02562 * 17 16 15 40 40 H 0.96996 * 120.00087 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 16 3.8478 -0.5933 1.3257 6 6 4.2233 -1.4979 2.8525 7 8 4.3991 -1.3080 0.2282 8 8 4.1976 0.7714 1.5110 9 7 2.0183 -0.6906 -1.1962 10 16 2.3864 0.1744 -2.5594 11 8 1.2597 0.9972 -2.8290 12 8 2.9107 -0.7567 -3.4961 13 6 3.7093 1.2621 -2.1455 14 6 5.0143 0.8549 -2.3052 15 6 6.0570 1.7062 -1.9741 16 6 5.7990 2.9780 -1.4855 17 6 4.5023 3.4089 -1.3245 18 6 3.4357 2.5528 -1.6566 19 6 2.0990 2.9846 -1.4951 20 1 1.3396 2.2843 -1.1800 21 6 1.7601 4.3195 -1.7435 22 7 0.5763 4.7665 -1.4114 23 14 2.9980 5.4631 -2.5492 24 1 3.7594 6.1869 -1.4995 25 1 3.9363 4.6690 -3.3824 26 1 2.2826 6.4425 -3.4059 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6053 -0.2617 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 3.8706 -2.5254 2.7622 33 1 5.3003 -1.4972 3.0198 34 1 3.7244 -1.0152 3.6929 35 1 2.1260 -1.6546 -1.1896 36 1 5.2268 -0.1334 -2.6854 37 1 7.0780 1.3765 -2.0979 38 1 6.6191 3.6331 -1.2311 39 1 4.3036 4.4000 -0.9442 40 1 0.3412 5.6916 -1.5839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434559225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:04 Heat of formation + Delta-G solvation = -115.206683 kcal Electronic energy + Delta-G solvation = -28709.028509 eV Core-core repulsion = 24743.590780 eV Total energy + Delta-G solvation = -3965.437729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -37.79921 -36.89220 -36.70648 -36.06974 -35.66912 -34.76072 -33.63011 -30.58431 -30.48042 -29.96745 -29.56445 -27.52426 -25.24011 -22.09485 -21.40155 -21.02696 -18.90377 -18.64889 -17.65599 -17.20478 -16.64063 -16.38145 -16.04844 -15.77388 -15.25397 -15.16262 -14.45980 -14.08725 -13.59879 -13.55092 -13.41387 -13.37703 -13.26683 -12.96816 -12.75336 -12.57465 -12.15530 -12.01000 -11.77514 -11.71462 -11.69609 -11.23762 -11.16832 -11.08577 -11.04905 -10.88585 -10.81337 -10.76193 -10.59193 -10.39140 -10.12769 -9.83308 -9.40417 -9.24047 -8.94308 -8.09980 -7.61855 -6.99858 -4.64928 0.05731 1.49398 2.20272 2.68661 2.84736 3.08644 3.18232 3.29791 3.77235 3.85016 3.94270 4.09958 4.45012 4.51002 4.65771 4.69240 4.75717 5.04053 5.24080 5.31253 5.43949 5.48252 5.56452 5.60673 5.81116 5.98297 6.08633 6.10543 6.32049 6.44878 6.56405 6.60923 6.80112 7.11438 7.23643 7.35087 7.49172 7.58753 7.70303 7.95795 8.28796 8.42409 8.66341 9.99010 Molecular weight = 347.07amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.006373 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.221044 B = 4392.300757 C = 4729.606745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.161 3.839 3 H 0.120 0.880 4 C -0.622 4.622 5 S 2.408 3.592 6 C -0.669 4.669 7 O -0.920 6.920 8 O -0.912 6.912 9 N -1.129 6.129 10 S 2.686 3.314 11 O -0.942 6.942 12 O -0.989 6.989 13 C -0.775 4.775 14 C 0.030 3.970 15 C -0.256 4.256 16 C -0.042 4.042 17 C -0.222 4.222 18 C 0.156 3.844 19 C -0.426 4.426 20 H 0.118 0.882 21 C 0.091 3.909 22 N -0.787 5.787 23 Si 0.903 3.097 24 H -0.267 1.267 25 H -0.239 1.239 26 H -0.287 1.287 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.411 0.589 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 -9.326 9.604 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.053 3.947 3 H 0.138 0.862 4 C -0.752 4.752 5 S 2.587 3.413 6 C -0.817 4.817 7 O -0.917 6.917 8 O -0.909 6.909 9 N -0.885 5.885 10 S 2.784 3.216 11 O -0.932 6.932 12 O -0.980 6.980 13 C -0.870 4.870 14 C 0.010 3.990 15 C -0.276 4.276 16 C -0.061 4.061 17 C -0.242 4.242 18 C 0.150 3.850 19 C -0.454 4.454 20 H 0.136 0.864 21 C -0.131 4.131 22 N -0.410 5.410 23 Si 0.729 3.271 24 H -0.193 1.193 25 H -0.162 1.162 26 H -0.214 1.214 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.152 0.848 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.245 0.755 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.524 -8.665 8.259 12.067 hybrid contribution 0.561 -0.001 1.027 1.170 sum 2.084 -8.666 9.286 12.871 Atomic orbital electron populations 1.22244 0.93398 1.02133 1.04233 1.20530 0.96470 0.96806 0.80937 0.86230 1.30737 1.26552 1.10388 1.07475 1.08429 0.78651 0.76833 0.77351 1.30447 1.12200 1.15353 1.23696 1.93602 1.75380 1.74659 1.48079 1.93682 1.80893 1.30613 1.85733 1.56213 1.82715 1.19446 1.30110 1.01698 0.74831 0.72907 0.72199 1.93633 1.49905 1.67176 1.82458 1.93473 1.81510 1.63917 1.59127 1.29936 1.12194 1.13550 1.31302 1.20331 0.91491 0.97000 0.90184 1.20490 0.97270 0.96223 1.13610 1.20812 0.95765 0.95131 0.94345 1.21138 0.93025 1.00537 1.09511 1.17171 0.93336 0.89454 0.85030 1.20059 0.93430 0.96025 1.35850 0.86416 1.26071 0.96021 0.98135 0.92827 1.69603 1.20362 1.17463 1.33570 0.86440 0.80815 0.79390 0.80460 1.19306 1.16215 1.21364 0.91504 0.89608 0.92516 0.84041 0.84785 0.85759 0.85522 0.85670 0.75535 0.87037 0.88235 0.88374 0.87625 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.52 37.15 0.35 -1.95 16 2 C 0.16 2.54 2.37 -67.93 -0.16 2.38 16 3 H 0.12 2.26 4.96 -51.93 -0.26 2.00 16 4 C -0.62 -6.63 5.38 37.16 0.20 -6.43 16 5 S 2.41 31.74 5.28 -107.50 -0.57 31.17 16 6 C -0.67 -5.23 10.62 101.05 1.07 -4.15 16 7 O -0.92 -14.80 17.17 -57.83 -0.99 -15.79 16 8 O -0.91 -16.33 18.10 -57.83 -1.05 -17.38 16 9 N -1.13 -19.38 4.43 -4.89 -0.02 -19.41 16 10 S 2.69 59.82 5.39 -107.50 -0.58 59.24 16 11 O -0.94 -23.29 13.83 -57.17 -0.79 -24.09 16 12 O -0.99 -23.28 17.28 -57.17 -0.99 -24.26 16 13 C -0.77 -18.68 5.75 -38.87 -0.22 -18.91 16 14 C 0.03 0.68 9.51 -39.66 -0.38 0.31 16 15 C -0.26 -5.59 10.05 -39.29 -0.39 -5.99 16 16 C -0.04 -0.93 10.02 -39.66 -0.40 -1.32 16 17 C -0.22 -5.41 6.95 -38.87 -0.27 -5.68 16 18 C 0.16 3.95 4.71 -106.82 -0.50 3.45 16 19 C -0.43 -11.17 6.90 -37.74 -0.26 -11.43 16 20 H 0.12 3.05 4.46 -52.49 -0.23 2.82 16 21 C 0.09 2.35 5.48 -17.34 -0.09 2.26 16 22 N -0.79 -20.27 13.93 55.55 0.77 -19.50 16 23 Si 0.90 20.68 24.49 -169.99 -4.16 16.51 16 24 H -0.27 -5.79 6.79 56.52 0.38 -5.41 16 25 H -0.24 -5.68 6.63 56.52 0.37 -5.31 16 26 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.48 7.53 -51.92 -0.39 1.09 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.14 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.13 0.92 8.14 -51.92 -0.42 0.49 16 32 H 0.12 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.41 5.74 8.80 -34.46 -0.30 5.44 16 36 H 0.11 2.39 7.60 -52.49 -0.40 1.99 16 37 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.11 2.48 4.92 -52.48 -0.26 2.22 16 40 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -35.68 347.35 -9.02 -44.70 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -4.83 Total: 11.02 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: -1.06 Total: -47.46 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.75 Total: -38.90 kcal Atomic # 8 Polarization: -77.70 SS G_CDS: -3.82 Total: -81.52 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.16 Total: 16.51 kcal Atomic # 16 Polarization: 91.56 SS G_CDS: -1.15 Total: 90.41 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.68 -9.02 -44.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434559225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.503 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds