Wall clock time and date at job start Wed Apr 1 2020 04:06:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 O 1.45201 * 109.47352 * 2 1
4 4 C 1.34783 * 117.00144 * 179.97438 * 3 2 1
5 5 O 1.21491 * 120.00062 * 0.02562 * 4 3 2
6 6 C 1.47505 * 119.99827 * 180.02562 * 4 3 2
7 7 N 1.30350 * 124.73256 * 359.97438 * 6 4 3
8 8 C 1.30238 * 117.42731 * 179.97438 * 7 6 4
9 9 C 1.37405 * 113.97440 * 359.97438 * 8 7 6
10 10 C 1.46923 * 126.16179 * 180.02562 * 9 8 7
11 11 O 1.21665 * 119.99839 * 9.74139 * 10 9 8
12 12 N 1.34776 * 120.00026 * 189.74048 * 10 9 8
13 13 C 1.36831 * 120.00009 * 187.02322 * 12 10 9
14 14 H 1.08004 * 119.99999 * 242.87848 * 13 12 10
15 15 C 1.39081 * 120.00009 * 62.87590 * 13 12 10
16 16 N 1.31308 * 119.99960 * 48.35562 * 15 13 12
17 17 Si 1.86800 * 119.99918 * 228.35774 * 15 13 12
18 18 H 1.48498 * 109.46963 * 90.00379 * 17 15 13
19 19 H 1.48502 * 109.46897 * 209.99842 * 17 15 13
20 20 H 1.48498 * 109.47433 * 330.00017 * 17 15 13
21 21 C 1.39333 * 119.99725 * 7.02918 * 12 10 9
22 22 C 1.39087 * 119.70323 * 50.59102 * 21 12 10
23 23 C 1.38378 * 119.09997 * 179.69907 * 22 21 12
24 24 C 1.38834 * 118.48829 * 0.54192 * 23 22 21
25 25 C 1.38153 * 119.31730 * 359.45579 * 24 23 22
26 26 N 1.31877 * 120.85197 * 0.27650 * 25 24 23
27 27 S 1.70927 * 124.73087 * 180.29135 * 6 4 3
28 28 H 1.08997 * 109.47149 * 299.99688 * 1 2 3
29 29 H 1.09006 * 109.47299 * 59.99663 * 1 2 3
30 30 H 1.08996 * 109.47559 * 179.97438 * 1 2 3
31 31 H 1.09006 * 109.47156 * 240.00495 * 2 1 3
32 32 H 1.09006 * 109.47299 * 120.00337 * 2 1 3
33 33 H 1.08001 * 123.01481 * 180.02562 * 8 7 6
34 34 H 0.96998 * 120.00323 * 184.91069 * 16 15 13
35 35 H 1.08005 * 120.44816 * 359.97438 * 22 21 12
36 36 H 1.07988 * 120.75632 * 180.27309 * 23 22 21
37 37 H 1.07997 * 120.34068 * 179.73173 * 24 23 22
38 38 H 1.07998 * 119.57349 * 180.25738 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3502 1.5455 0.0005
5 8 4.0903 0.5820 0.0005
6 6 3.9140 2.9086 0.0011
7 7 3.2079 4.0043 0.0007
8 6 3.8547 5.1347 0.0019
9 6 5.2217 4.9959 0.0040
10 6 6.2041 6.0883 0.0062
11 8 5.8383 7.2349 0.1846
12 7 7.5104 5.8204 -0.1894
13 6 8.4414 6.8127 -0.0453
14 1 9.0375 7.1209 -0.8915
15 6 8.6200 7.4244 1.1909
16 7 8.7537 6.6922 2.2726
17 14 8.6697 9.2878 1.3124
18 1 7.2957 9.8062 1.5329
19 1 9.5376 9.6867 2.4494
20 1 9.2152 9.8518 0.0516
21 6 7.9127 4.5328 -0.5384
22 6 7.2904 3.8795 -1.5969
23 6 7.7041 2.6035 -1.9369
24 6 8.7222 2.0182 -1.1964
25 6 9.2957 2.7255 -0.1574
26 7 8.8844 3.9426 0.1403
27 16 5.5842 3.2716 -0.0053
28 1 -0.3633 0.5138 0.8900
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0276 -0.0005
31 1 1.8933 -0.5138 -0.8901
32 1 1.8933 -0.5139 0.8900
33 1 3.3608 6.0952 0.0021
34 1 8.8068 7.1175 3.1428
35 1 6.4980 4.3633 -2.1489
36 1 7.2426 2.0734 -2.7567
37 1 9.0654 1.0219 -1.4330
38 1 10.0908 2.2758 0.4187
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001461245703.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:06:17
Heat of formation + Delta-G solvation = 1.815302 kcal
Electronic energy + Delta-G solvation = -27862.806786 eV
Core-core repulsion = 23799.292310 eV
Total energy + Delta-G solvation = -4063.514475 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.077 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-40.53246 -40.27262 -39.36328 -38.06740 -36.71697 -34.85905 -32.63635 -32.08750
-31.99157 -30.38754 -29.50105 -27.26044 -25.13199 -23.73137 -23.28484 -22.80931
-22.13065 -21.22784 -19.66399 -18.54527 -17.96116 -17.29935 -16.76950 -16.32464
-16.31134 -16.01798 -15.79035 -14.86944 -14.83957 -14.73564 -14.35362 -13.99936
-13.89392 -13.66446 -13.53166 -13.21438 -13.02738 -12.85910 -12.65568 -12.14403
-11.96280 -11.82103 -11.73351 -11.45159 -11.24570 -10.96635 -10.77635 -10.71334
-10.38054 -10.15565 -9.74737 -9.29516 -9.17783 -8.97688 -8.86359 -8.53384
-8.32855 -7.51729 -6.60913 -4.30712 -0.02750 1.11683 1.50325 1.52853
2.03551 2.06191 2.65997 3.03538 3.22488 3.34237 3.41507 3.73874
3.89140 4.13719 4.27164 4.40359 4.67566 4.70231 4.73784 4.94903
5.00684 5.02980 5.10463 5.21582 5.39468 5.44183 5.46073 5.49909
5.54138 5.73097 5.90399 6.02857 6.15781 6.24588 6.36176 6.49779
6.98122 7.33771 7.40263 7.77597 7.92893 8.22793 8.51998 8.81550
9.05275 9.54887 10.32262
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.015062 B = 0.003936 C = 0.003324
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1858.571167 B = 7111.708431 C = 8420.330425
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.059 3.941
3 O -0.332 6.332
4 C 0.556 3.444
5 O -0.499 6.499
6 C -0.091 4.091
7 N -0.426 5.426
8 C 0.092 3.908
9 C -0.267 4.267
10 C 0.568 3.432
11 O -0.505 6.505
12 N -0.377 5.377
13 C -0.377 4.377
14 H 0.091 0.909
15 C 0.105 3.895
16 N -0.772 5.772
17 Si 0.889 3.111
18 H -0.265 1.265
19 H -0.289 1.289
20 H -0.265 1.265
21 C 0.343 3.657
22 C -0.219 4.219
23 C -0.050 4.050
24 C -0.212 4.212
25 C 0.124 3.876
26 N -0.452 5.452
27 S 0.352 5.648
28 H 0.068 0.932
29 H 0.068 0.932
30 H 0.080 0.920
31 H 0.072 0.928
32 H 0.072 0.928
33 H 0.193 0.807
34 H 0.271 0.729
35 H 0.131 0.869
36 H 0.132 0.868
37 H 0.130 0.870
38 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.029 -13.148 -5.280 16.285
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.015 4.015
3 O -0.248 6.248
4 C 0.397 3.603
5 O -0.386 6.386
6 C -0.357 4.357
7 N -0.145 5.145
8 C -0.070 4.070
9 C -0.394 4.394
10 C 0.355 3.645
11 O -0.382 6.382
12 N -0.093 5.093
13 C -0.501 4.501
14 H 0.108 0.892
15 C -0.115 4.115
16 N -0.397 5.397
17 Si 0.713 3.287
18 H -0.190 1.190
19 H -0.216 1.216
20 H -0.189 1.189
21 C 0.115 3.885
22 C -0.250 4.250
23 C -0.078 4.078
24 C -0.234 4.234
25 C -0.037 4.037
26 N -0.164 5.164
27 S 0.619 5.381
28 H 0.087 0.913
29 H 0.087 0.913
30 H 0.098 0.902
31 H 0.090 0.910
32 H 0.090 0.910
33 H 0.210 0.790
34 H 0.082 0.918
35 H 0.149 0.851
36 H 0.150 0.850
37 H 0.148 0.852
38 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -7.366 -13.210 -4.188 15.694
hybrid contribution -0.777 0.956 -0.423 1.302
sum -8.143 -12.255 -4.611 15.419
Atomic orbital electron populations
1.21798 0.92375 1.02878 1.03834 1.23133 0.95617 0.79977 1.02769
1.86699 1.22619 1.32055 1.83390 1.19703 0.81115 0.86898 0.72546
1.90881 1.60596 1.40822 1.46323 1.26498 1.00379 0.94774 1.14041
1.66237 1.39295 0.96966 1.11983 1.22391 0.88501 0.97076 0.99042
1.27543 1.00043 0.98203 1.13596 1.17136 0.81108 0.86268 0.79978
1.90701 1.78037 1.20231 1.49251 1.40792 1.04468 1.03757 1.60255
1.18624 1.22850 1.12846 0.95766 0.89159 1.25477 0.91034 1.00023
0.94945 1.70468 1.30961 1.38463 0.99818 0.86616 0.78896 0.85185
0.78016 1.18991 1.21562 1.18887 1.19696 0.91280 0.87104 0.90444
1.21830 1.04879 0.98108 1.00209 1.21296 0.94867 0.93702 0.97893
1.21976 0.99937 1.01821 0.99628 1.22763 0.97083 0.89795 0.94084
1.67646 1.12781 1.09304 1.26664 1.85502 0.98916 0.97366 1.56359
0.91314 0.91320 0.90162 0.90986 0.90997 0.78985 0.91823 0.85141
0.85003 0.85169 0.83003
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.13 10.29 37.15 0.38 -0.74 16
2 C 0.06 0.60 6.20 37.15 0.23 0.83 16
3 O -0.33 -4.76 10.20 -40.72 -0.42 -5.17 16
4 C 0.56 8.97 7.96 34.51 0.27 9.24 16
5 O -0.50 -8.33 16.64 -19.26 -0.32 -8.65 16
6 C -0.09 -1.57 7.24 -14.41 -0.10 -1.67 16
7 N -0.43 -7.58 10.46 -12.05 -0.13 -7.71 16
8 C 0.09 1.65 11.19 -18.53 -0.21 1.45 16
9 C -0.27 -5.35 5.55 -36.37 -0.20 -5.55 16
10 C 0.57 13.61 7.17 -12.74 -0.09 13.52 16
11 O -0.51 -13.26 16.49 5.22 0.09 -13.17 16
12 N -0.38 -9.28 2.70 -62.02 -0.17 -9.45 16
13 C -0.38 -10.08 8.27 -15.01 -0.12 -10.21 16
14 H 0.09 2.42 8.06 -52.48 -0.42 2.00 16
15 C 0.11 2.80 4.68 -17.46 -0.08 2.72 16
16 N -0.77 -20.99 13.93 55.50 0.77 -20.21 16
17 Si 0.89 20.86 29.69 -169.99 -5.05 15.82 16
18 H -0.26 -6.46 7.11 56.52 0.40 -6.06 16
19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16
20 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16
21 C 0.34 7.36 4.78 -154.71 -0.74 6.62 16
22 C -0.22 -3.81 5.71 -39.21 -0.22 -4.04 16
23 C -0.05 -0.71 9.21 -39.31 -0.36 -1.07 16
24 C -0.21 -2.89 10.11 -39.39 -0.40 -3.29 16
25 C 0.12 2.03 11.18 -17.56 -0.20 1.83 16
26 N -0.45 -9.67 10.15 -12.35 -0.13 -9.80 16
27 S 0.35 6.24 15.90 -107.50 -1.71 4.53 16
28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.19 3.12 8.06 -52.49 -0.42 2.70 16
34 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16
35 H 0.13 2.17 7.28 -52.48 -0.38 1.79 16
36 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16
37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16
38 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16
LS Contribution 353.62 15.07 5.33 5.33
Total: -1.00 -32.16 353.62 -7.31 -39.47
By element:
Atomic # 1 Polarization: 3.12 SS G_CDS: -3.74 Total: -0.62 kcal
Atomic # 6 Polarization: 11.49 SS G_CDS: -1.84 Total: 9.65 kcal
Atomic # 7 Polarization: -47.52 SS G_CDS: 0.35 Total: -47.17 kcal
Atomic # 8 Polarization: -26.35 SS G_CDS: -0.65 Total: -27.00 kcal
Atomic # 14 Polarization: 20.86 SS G_CDS: -5.05 Total: 15.82 kcal
Atomic # 16 Polarization: 6.24 SS G_CDS: -1.71 Total: 4.53 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -32.16 -7.31 -39.47 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001461245703.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.284 kcal
(2) G-P(sol) polarization free energy of solvation -32.158 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.126 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.815 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds