Wall clock time and date at job start Wed Apr 1 2020 04:06:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 O 1.45201 * 109.47352 * 2 1
4 4 C 1.34783 * 117.00144 * 179.97438 * 3 2 1
5 5 O 1.21491 * 120.00062 * 0.02562 * 4 3 2
6 6 C 1.47505 * 119.99827 * 180.02562 * 4 3 2
7 7 N 1.30350 * 124.73256 * 359.97438 * 6 4 3
8 8 C 1.30238 * 117.42731 * 179.97438 * 7 6 4
9 9 C 1.37405 * 113.97440 * 359.97438 * 8 7 6
10 10 C 1.46923 * 126.16179 * 180.02562 * 9 8 7
11 11 O 1.21665 * 119.99839 * 9.74139 * 10 9 8
12 12 N 1.34776 * 120.00026 * 189.74048 * 10 9 8
13 13 C 1.36831 * 120.00009 * 187.02322 * 12 10 9
14 14 H 1.08004 * 119.99999 * 242.87848 * 13 12 10
15 15 C 1.39081 * 120.00009 * 62.87590 * 13 12 10
16 16 N 1.31308 * 119.99960 * 48.35562 * 15 13 12
17 17 Si 1.86800 * 119.99918 * 228.35774 * 15 13 12
18 18 H 1.48498 * 109.46963 * 90.00379 * 17 15 13
19 19 H 1.48502 * 109.46897 * 209.99842 * 17 15 13
20 20 H 1.48498 * 109.47433 * 330.00017 * 17 15 13
21 21 C 1.39333 * 119.99725 * 7.02918 * 12 10 9
22 22 C 1.39087 * 119.70323 * 50.59102 * 21 12 10
23 23 C 1.38378 * 119.09997 * 179.69907 * 22 21 12
24 24 C 1.38834 * 118.48829 * 0.54192 * 23 22 21
25 25 C 1.38153 * 119.31730 * 359.45579 * 24 23 22
26 26 N 1.31877 * 120.85197 * 0.27650 * 25 24 23
27 27 S 1.70927 * 124.73087 * 180.29135 * 6 4 3
28 28 H 1.08997 * 109.47149 * 299.99688 * 1 2 3
29 29 H 1.09006 * 109.47299 * 59.99663 * 1 2 3
30 30 H 1.08996 * 109.47559 * 179.97438 * 1 2 3
31 31 H 1.09006 * 109.47156 * 240.00495 * 2 1 3
32 32 H 1.09006 * 109.47299 * 120.00337 * 2 1 3
33 33 H 1.08001 * 123.01481 * 180.02562 * 8 7 6
34 34 H 0.96998 * 120.00323 * 184.91069 * 16 15 13
35 35 H 1.08005 * 120.44816 * 359.97438 * 22 21 12
36 36 H 1.07988 * 120.75632 * 180.27309 * 23 22 21
37 37 H 1.07997 * 120.34068 * 179.73173 * 24 23 22
38 38 H 1.07998 * 119.57349 * 180.25738 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3502 1.5455 0.0005
5 8 4.0903 0.5820 0.0005
6 6 3.9140 2.9086 0.0011
7 7 3.2079 4.0043 0.0007
8 6 3.8547 5.1347 0.0019
9 6 5.2217 4.9959 0.0040
10 6 6.2041 6.0883 0.0062
11 8 5.8383 7.2349 0.1846
12 7 7.5104 5.8204 -0.1894
13 6 8.4414 6.8127 -0.0453
14 1 9.0375 7.1209 -0.8915
15 6 8.6200 7.4244 1.1909
16 7 8.7537 6.6922 2.2726
17 14 8.6697 9.2878 1.3124
18 1 7.2957 9.8062 1.5329
19 1 9.5376 9.6867 2.4494
20 1 9.2152 9.8518 0.0516
21 6 7.9127 4.5328 -0.5384
22 6 7.2904 3.8795 -1.5969
23 6 7.7041 2.6035 -1.9369
24 6 8.7222 2.0182 -1.1964
25 6 9.2957 2.7255 -0.1574
26 7 8.8844 3.9426 0.1403
27 16 5.5842 3.2716 -0.0053
28 1 -0.3633 0.5138 0.8900
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0276 -0.0005
31 1 1.8933 -0.5138 -0.8901
32 1 1.8933 -0.5139 0.8900
33 1 3.3608 6.0952 0.0021
34 1 8.8068 7.1175 3.1428
35 1 6.4980 4.3633 -2.1489
36 1 7.2426 2.0734 -2.7567
37 1 9.0654 1.0219 -1.4330
38 1 10.0908 2.2758 0.4187
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001461245703.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:06:17
Heat of formation + Delta-G solvation = -18.844844 kcal
Electronic energy + Delta-G solvation = -27863.702677 eV
Core-core repulsion = 23799.292310 eV
Total energy + Delta-G solvation = -4064.410366 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.077 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.80215 -41.75700 -40.75774 -39.65786 -37.85705 -36.60040 -34.47804 -33.45078
-32.86390 -31.77783 -30.94209 -28.74171 -26.87244 -24.90249 -24.52063 -24.20080
-23.29782 -22.70233 -21.04786 -20.10754 -19.58932 -18.60462 -17.86597 -17.77932
-17.69519 -17.55983 -17.08360 -16.64510 -16.25019 -16.07035 -15.84746 -15.54702
-15.33605 -15.02501 -14.66492 -14.65007 -14.38016 -13.93840 -13.84505 -13.63264
-13.46648 -13.01600 -12.93383 -12.69584 -12.65352 -12.55462 -12.23004 -12.19504
-11.59337 -11.57769 -11.25564 -10.89325 -10.82373 -10.53846 -10.45772 -10.13376
-9.81250 -9.16657 -8.53026 -6.29575 -1.46580 -0.26127 0.13081 0.19102
0.67571 0.72600 1.30306 1.44804 1.49229 1.50460 1.64667 2.02340
2.23220 2.53438 2.72567 2.89053 2.98164 3.45544 3.70057 3.82749
3.97789 4.00509 4.03523 4.07153 4.18510 4.25800 4.32807 4.60827
4.70547 4.79887 4.85681 4.92012 5.00772 5.15021 5.27505 5.30095
5.34240 5.75215 6.04620 6.11652 6.46013 6.54604 6.62917 7.08047
7.43725 7.71269 8.37432
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.015062 B = 0.003936 C = 0.003324
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1858.571167 B = 7111.708431 C = 8420.330425
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.049 3.951
3 O -0.339 6.339
4 C 0.559 3.441
5 O -0.504 6.504
6 C -0.084 4.084
7 N -0.433 5.433
8 C 0.108 3.892
9 C -0.301 4.301
10 C 0.562 3.438
11 O -0.551 6.551
12 N -0.393 5.393
13 C -0.400 4.400
14 H 0.073 0.927
15 C 0.074 3.926
16 N -0.805 5.805
17 Si 0.935 3.065
18 H -0.282 1.282
19 H -0.275 1.275
20 H -0.258 1.258
21 C 0.313 3.687
22 C -0.216 4.216
23 C -0.043 4.043
24 C -0.180 4.180
25 C 0.108 3.892
26 N -0.500 5.500
27 S 0.384 5.616
28 H 0.064 0.936
29 H 0.067 0.933
30 H 0.108 0.892
31 H 0.082 0.918
32 H 0.077 0.923
33 H 0.205 0.795
34 H 0.273 0.727
35 H 0.133 0.867
36 H 0.178 0.822
37 H 0.181 0.819
38 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.844 -16.792 -6.585 20.089
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.024 4.024
3 O -0.255 6.255
4 C 0.400 3.600
5 O -0.392 6.392
6 C -0.351 4.351
7 N -0.152 5.152
8 C -0.054 4.054
9 C -0.428 4.428
10 C 0.350 3.650
11 O -0.431 6.431
12 N -0.109 5.109
13 C -0.524 4.524
14 H 0.091 0.909
15 C -0.143 4.143
16 N -0.433 5.433
17 Si 0.758 3.242
18 H -0.208 1.208
19 H -0.200 1.200
20 H -0.182 1.182
21 C 0.085 3.915
22 C -0.247 4.247
23 C -0.070 4.070
24 C -0.200 4.200
25 C -0.051 4.051
26 N -0.213 5.213
27 S 0.652 5.348
28 H 0.083 0.917
29 H 0.086 0.914
30 H 0.127 0.873
31 H 0.101 0.899
32 H 0.096 0.904
33 H 0.221 0.779
34 H 0.083 0.917
35 H 0.151 0.849
36 H 0.195 0.805
37 H 0.198 0.802
38 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges -8.145 -16.901 -5.508 19.553
hybrid contribution -0.596 1.721 -0.135 1.827
sum -8.741 -15.179 -5.643 18.403
Atomic orbital electron populations
1.21845 0.90241 1.04670 1.03627 1.23569 0.97274 0.78002 1.03601
1.86697 1.21294 1.34789 1.82702 1.19481 0.81873 0.86059 0.72618
1.90871 1.60953 1.40697 1.46716 1.26917 1.00693 0.95528 1.11963
1.66339 1.39087 0.96904 1.12865 1.22606 0.87929 0.97798 0.97100
1.27113 0.99809 0.98787 1.17065 1.17495 0.81588 0.86816 0.79091
1.90638 1.78905 1.22039 1.51553 1.40794 1.04278 1.05179 1.60677
1.18488 1.23189 1.15441 0.95237 0.90906 1.26030 0.90847 1.02630
0.94784 1.70493 1.33111 1.39512 1.00135 0.85905 0.77931 0.81736
0.78605 1.20841 1.20049 1.18171 1.19580 0.92866 0.86916 0.92143
1.21922 1.04621 0.99385 0.98783 1.21861 0.94435 0.92165 0.98535
1.22519 0.97610 1.03094 0.96818 1.23340 0.97890 0.88471 0.95424
1.67484 1.13476 1.11787 1.28534 1.85201 0.98652 0.95318 1.55655
0.91680 0.91372 0.87316 0.89919 0.90418 0.77864 0.91667 0.84934
0.80513 0.80159 0.80495
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.75 10.29 71.98 0.74 -1.01 16
2 C 0.05 0.85 6.20 71.98 0.45 1.30 16
3 O -0.34 -8.93 10.20 -56.94 -0.58 -9.51 16
4 C 0.56 16.67 7.96 70.27 0.56 17.23 16
5 O -0.50 -15.33 16.64 19.86 0.33 -15.00 16
6 C -0.08 -2.78 7.24 87.36 0.63 -2.14 16
7 N -0.43 -14.96 10.46 -192.03 -2.01 -16.97 16
8 C 0.11 3.92 11.19 84.73 0.95 4.87 16
9 C -0.30 -12.28 5.55 24.35 0.14 -12.15 16
10 C 0.56 28.20 7.17 86.52 0.62 28.82 16
11 O -0.55 -30.63 16.49 -4.24 -0.07 -30.70 16
12 N -0.39 -20.22 2.70 -468.36 -1.26 -21.48 16
13 C -0.40 -22.53 8.27 84.12 0.70 -21.83 16
14 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16
15 C 0.07 4.11 4.68 84.97 0.40 4.51 16
16 N -0.81 -45.79 13.93 21.68 0.30 -45.48 16
17 Si 0.94 44.80 29.69 68.60 2.04 46.84 16
18 H -0.28 -14.21 7.11 99.48 0.71 -13.50 16
19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
20 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16
21 C 0.31 13.54 4.78 132.94 0.64 14.18 16
22 C -0.22 -7.23 5.71 22.51 0.13 -7.10 16
23 C -0.04 -1.03 9.21 22.45 0.21 -0.82 16
24 C -0.18 -4.03 10.11 22.39 0.23 -3.80 16
25 C 0.11 3.29 11.18 84.67 0.95 4.23 16
26 N -0.50 -21.43 10.15 -193.00 -1.96 -23.39 16
27 S 0.38 13.13 15.90 -56.49 -0.90 12.23 16
28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
29 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16
30 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16
31 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16
32 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16
33 H 0.20 6.72 8.06 -2.91 -0.02 6.70 16
34 H 0.27 14.52 8.31 -92.71 -0.77 13.74 16
35 H 0.13 4.32 7.28 -2.91 -0.02 4.30 16
36 H 0.18 2.73 8.06 -2.92 -0.02 2.70 16
37 H 0.18 2.34 8.06 -2.91 -0.02 2.31 16
38 H 0.18 4.25 8.06 -2.91 -0.02 4.23 16
Total: -1.00 -74.84 353.62 4.32 -70.52
By element:
Atomic # 1 Polarization: 5.56 SS G_CDS: 1.11 Total: 6.68 kcal
Atomic # 6 Polarization: 18.96 SS G_CDS: 7.32 Total: 26.28 kcal
Atomic # 7 Polarization: -102.40 SS G_CDS: -4.93 Total: -107.33 kcal
Atomic # 8 Polarization: -54.89 SS G_CDS: -0.32 Total: -55.21 kcal
Atomic # 14 Polarization: 44.80 SS G_CDS: 2.04 Total: 46.84 kcal
Atomic # 16 Polarization: 13.13 SS G_CDS: -0.90 Total: 12.23 kcal
Total: -74.84 4.32 -70.52 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001461245703.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.677 kcal
(2) G-P(sol) polarization free energy of solvation -74.843 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.166 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.522 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.845 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds