Wall clock time and date at job start Wed Apr 1 2020 03:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47117 * 88.76548 * 3 2 1 5 5 C 1.37101 * 120.00235 * 264.38584 * 4 3 2 6 6 H 1.07993 * 120.00074 * 196.17747 * 5 4 3 7 7 C 1.38941 * 119.99796 * 16.18432 * 5 4 3 8 8 N 1.31418 * 120.00220 * 20.84467 * 7 5 4 9 9 Si 1.86801 * 120.00259 * 200.84803 * 7 5 4 10 10 H 1.48501 * 109.47282 * 84.93489 * 9 7 5 11 11 H 1.48498 * 109.47343 * 204.94200 * 9 7 5 12 12 H 1.48505 * 109.46720 * 324.94033 * 9 7 5 13 13 C 1.34782 * 119.99789 * 84.38825 * 4 3 2 14 14 O 1.21297 * 119.99615 * 179.97438 * 13 4 3 15 15 C 1.50693 * 120.00110 * 0.02562 * 13 4 3 16 16 N 1.46504 * 109.47250 * 180.02562 * 15 13 4 17 17 S 1.65595 * 119.99991 * 164.99702 * 16 15 13 18 18 O 1.42102 * 106.40576 * 311.45962 * 17 16 15 19 19 O 1.42103 * 106.40127 * 178.53969 * 17 16 15 20 20 C 1.76203 * 107.22057 * 65.00089 * 17 16 15 21 21 C 1.38363 * 119.84821 * 89.99501 * 20 17 16 22 22 C 1.37947 * 120.15041 * 180.02562 * 21 20 17 23 23 C 1.39632 * 119.84735 * 0.02562 * 22 21 20 24 24 C 1.43193 * 120.14766 * 180.02562 * 23 22 21 25 25 N 9.52426 * 117.16042 * 206.05727 * 2 1 3 26 26 C 1.39635 * 119.69643 * 0.27597 * 23 22 21 27 27 C 1.37950 * 119.84762 * 359.42087 * 26 23 22 28 28 H 4.40636 * 5.51438 * 179.97438 * 4 1 2 29 29 H 1.08996 * 109.46952 * 328.76534 * 3 2 1 30 30 H 1.09003 * 109.46508 * 208.76748 * 3 2 1 31 31 H 0.96998 * 119.99762 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47792 * 59.99644 * 15 13 4 33 33 H 1.09008 * 109.46961 * 299.99698 * 15 13 4 34 34 H 0.96996 * 120.00017 * 345.00091 * 16 15 13 35 35 H 1.08001 * 119.92479 * 0.02562 * 21 20 17 36 36 H 1.07999 * 120.07218 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.07424 * 179.70368 * 26 23 22 38 38 H 1.08001 * 119.92381 * 180.27889 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0289 -1.3808 5 6 3.4729 -1.2232 -1.9629 6 1 4.0684 -1.2352 -2.8637 7 6 3.0497 -2.4179 -1.3938 8 7 2.0218 -2.4281 -0.5751 9 14 3.9420 -4.0100 -1.7922 10 1 5.1136 -4.1595 -0.8920 11 1 3.0189 -5.1568 -1.5980 12 1 4.4030 -3.9791 -3.2035 13 6 3.2509 1.1181 -2.0791 14 8 3.6556 1.0936 -3.2223 15 6 2.8793 2.4308 -1.4392 16 7 3.0928 3.5187 -2.3969 17 16 2.4315 5.0107 -2.1162 18 8 1.0679 4.7890 -1.7832 19 8 2.8434 5.8413 -3.1931 20 6 3.1986 5.6571 -0.6676 21 6 4.3509 6.4150 -0.7784 22 6 4.9570 6.9237 0.3516 23 6 4.4052 6.6718 1.6093 24 6 5.0286 7.1972 2.7864 25 7 5.5216 7.6127 3.7224 26 6 3.2456 5.9010 1.7142 27 6 2.6464 5.4037 0.5755 28 1 -1.0500 -0.0002 0.0000 29 1 3.0097 -0.8779 0.5329 30 1 3.0089 0.9017 0.4946 31 1 1.7266 -3.2622 -0.1775 32 1 3.5004 2.5945 -0.5585 33 1 1.8301 2.4073 -1.1446 34 1 3.6215 3.3651 -3.1955 35 1 4.7769 6.6087 -1.7518 36 1 5.8566 7.5147 0.2637 37 1 2.8163 5.6983 2.6843 38 1 1.7470 4.8111 0.6549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467390086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:46 Heat of formation + Delta-G solvation = 4.874824 kcal Electronic energy + Delta-G solvation = -27141.722508 eV Core-core repulsion = 23078.340704 eV Total energy + Delta-G solvation = -4063.381804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.58867 -40.48248 -38.37012 -37.64807 -37.24160 -36.98411 -35.56455 -33.92824 -32.98722 -32.77972 -32.24714 -28.93120 -27.87487 -25.86503 -25.61631 -23.95965 -21.18293 -20.74312 -20.11645 -19.67856 -19.24098 -18.58834 -18.24757 -17.51587 -17.32087 -16.71608 -16.38139 -16.18799 -15.84568 -15.77321 -15.36611 -15.24455 -15.10638 -14.72724 -14.62725 -14.19489 -14.03817 -13.87395 -13.74206 -13.68597 -13.55097 -13.47217 -13.23896 -13.15679 -13.10762 -12.74213 -12.41851 -12.29380 -12.14500 -11.99600 -11.17473 -11.03570 -10.70753 -10.60178 -10.49210 -10.28068 -10.14675 -9.81669 -8.29125 -5.89002 -0.90204 -0.59948 0.21898 1.39789 1.46529 1.47535 1.53631 1.56964 1.87490 1.98246 2.19687 2.37728 2.45094 2.55924 2.63665 2.77013 3.08210 3.11880 3.29800 3.77256 3.80954 3.86591 3.96500 4.17020 4.27300 4.30407 4.44781 4.51326 4.63646 4.80275 4.83063 4.90160 4.96587 5.07570 5.12178 5.50542 5.52240 5.60753 5.94014 6.10161 6.27122 6.45760 7.16243 7.21457 7.43651 7.95962 8.68526 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.003119 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.149951 B = 8974.647394 C = 9754.914620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.156 4.156 3 C 0.226 3.774 4 N -0.446 5.446 5 C -0.350 4.350 6 H 0.078 0.922 7 C 0.007 3.993 8 N -0.869 5.869 9 Si 0.981 3.019 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.436 3.564 14 O -0.619 6.619 15 C 0.111 3.889 16 N -1.102 6.102 17 S 2.711 3.289 18 O -0.978 6.978 19 O -0.977 6.977 20 C -0.652 4.652 21 C -0.023 4.023 22 C -0.083 4.083 23 C 0.023 3.977 24 C 0.274 3.726 25 N -0.444 5.444 26 C -0.082 4.082 27 C -0.027 4.027 28 H 0.229 0.771 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.272 0.728 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.425 0.575 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.006 14.913 7.270 16.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.158 4.158 3 C 0.104 3.896 4 N -0.164 5.164 5 C -0.478 4.478 6 H 0.096 0.904 7 C -0.197 4.197 8 N -0.505 5.505 9 Si 0.806 3.194 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.224 3.776 14 O -0.505 6.505 15 C -0.019 4.019 16 N -0.864 5.864 17 S 2.803 3.197 18 O -0.968 6.968 19 O -0.967 6.967 20 C -0.743 4.743 21 C -0.042 4.042 22 C -0.104 4.104 23 C 0.019 3.981 24 C -0.041 4.041 25 N -0.119 5.119 26 C -0.103 4.103 27 C -0.046 4.046 28 H 0.245 0.755 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.142 0.858 33 H 0.122 0.878 34 H 0.263 0.737 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.186 0.814 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.133 15.792 7.945 17.806 hybrid contribution 0.442 -1.426 -0.518 1.580 sum 2.575 14.366 7.427 16.376 Atomic orbital electron populations 1.25148 0.96434 1.04585 1.00058 1.23449 0.95003 0.97156 1.00168 1.18515 0.84404 1.03283 0.83410 1.43869 1.55427 1.05466 1.11595 1.19570 1.32716 0.83185 1.12291 0.90399 1.25883 0.95395 1.01507 0.96957 1.70169 1.20788 1.28723 1.30853 0.85137 0.78392 0.77387 0.78521 1.18959 1.20653 1.20537 1.20655 0.84006 0.86424 0.86507 1.90486 1.52964 1.87163 1.19916 1.21092 1.03718 0.84878 0.92186 1.55145 1.71708 1.25361 1.34227 1.01155 0.73255 0.71557 0.73699 1.93574 1.32829 1.85197 1.85157 1.93568 1.83472 1.66302 1.53367 1.30925 1.10777 1.14644 1.17925 1.21124 0.91077 0.91168 1.00868 1.21551 1.00522 0.98765 0.89605 1.16364 0.95534 0.98531 0.87625 1.25745 0.92804 0.92916 0.92619 1.81350 1.09479 1.09566 1.11522 1.21562 0.93175 0.94887 1.00645 1.21187 0.98457 0.95110 0.89874 0.75471 0.88379 0.87191 0.91784 0.85840 0.87771 0.73662 0.81842 0.81459 0.81410 0.81727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.89 19.25 74.32 1.43 -7.46 16 2 C -0.16 -6.16 10.95 31.13 0.34 -5.82 16 3 C 0.23 8.62 4.91 84.58 0.42 9.04 16 4 N -0.45 -20.44 2.60 -645.43 -1.68 -22.12 16 5 C -0.35 -18.28 9.35 84.04 0.79 -17.50 16 6 H 0.08 4.42 7.36 -2.91 -0.02 4.40 16 7 C 0.01 0.32 4.90 84.92 0.42 0.74 16 8 N -0.87 -42.28 9.39 21.66 0.20 -42.08 16 9 Si 0.98 39.82 29.60 68.60 2.03 41.85 16 10 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 11 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 12 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 13 C 0.44 18.85 7.64 87.65 0.67 19.52 16 14 O -0.62 -31.46 15.37 -3.08 -0.05 -31.51 16 15 C 0.11 3.31 5.31 85.63 0.45 3.77 16 16 N -1.10 -30.34 5.93 -190.78 -1.13 -31.48 16 17 S 2.71 64.93 5.73 -56.49 -0.32 64.61 16 18 O -0.98 -28.43 16.74 -128.00 -2.14 -30.58 16 19 O -0.98 -27.34 17.27 -128.00 -2.21 -29.55 16 20 C -0.65 -10.87 5.95 22.33 0.13 -10.74 16 21 C -0.02 -0.31 9.50 22.23 0.21 -0.10 16 22 C -0.08 -0.87 9.76 22.54 0.22 -0.65 16 23 C 0.02 0.27 5.73 -21.36 -0.12 0.15 16 24 C 0.27 4.22 15.33 88.32 1.35 5.58 16 25 N -0.44 -9.26 18.54 19.01 0.35 -8.91 16 26 C -0.08 -0.87 9.76 22.54 0.22 -0.65 16 27 C -0.03 -0.37 9.50 22.23 0.21 -0.16 16 28 H 0.23 6.54 7.80 -4.42 -0.03 6.50 16 29 H 0.10 4.07 6.34 -2.39 -0.02 4.05 16 30 H 0.11 3.01 6.67 -2.39 -0.02 2.99 16 31 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 32 H 0.12 2.58 7.41 -2.39 -0.02 2.56 16 33 H 0.10 3.05 7.13 -2.38 -0.02 3.03 16 34 H 0.43 12.62 7.70 -96.75 -0.75 11.87 16 35 H 0.16 1.81 7.60 -2.91 -0.02 1.79 16 36 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.17 1.92 7.60 -2.91 -0.02 1.90 16 Total: -1.00 -74.40 360.39 2.18 -72.22 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.39 Total: 21.83 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 6.74 Total: -4.28 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -2.26 Total: -104.58 kcal Atomic # 8 Polarization: -87.24 SS G_CDS: -4.40 Total: -91.63 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Atomic # 16 Polarization: 64.93 SS G_CDS: -0.32 Total: 64.61 kcal Total: -74.40 2.18 -72.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467390086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.094 kcal (2) G-P(sol) polarization free energy of solvation -74.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds