Wall clock time and date at job start Wed Apr 1 2020 04:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86796 * 120.00055 * 2 1 4 4 H 1.48498 * 109.46873 * 269.99497 * 3 2 1 5 5 H 1.48495 * 109.47237 * 29.99756 * 3 2 1 6 6 H 1.48505 * 109.47176 * 149.99865 * 3 2 1 7 7 C 1.38655 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99944 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00285 * 180.02562 * 7 2 1 10 10 C 1.35743 * 117.00323 * 185.06067 * 9 7 2 11 11 C 1.38884 * 120.06847 * 354.45893 * 10 9 7 12 12 C 1.38100 * 119.93123 * 180.02562 * 11 10 9 13 13 C 1.38309 * 120.06951 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.92835 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47436 * 90.00063 * 14 13 12 16 16 O 1.21280 * 119.99946 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00040 * 179.97438 * 15 14 13 18 18 C 1.46498 * 119.99904 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.47301 * 180.02562 * 18 17 15 20 20 C 1.38346 * 119.98450 * 94.71808 * 19 18 17 21 21 N 1.32153 * 120.01580 * 179.75394 * 20 19 18 22 22 C 1.32239 * 119.98059 * 0.52731 * 21 20 19 23 23 Cl 1.73608 * 120.01703 * 179.74872 * 22 21 20 24 24 C 1.38519 * 119.97250 * 359.73296 * 22 21 20 25 25 N 1.32123 * 119.97852 * 359.97438 * 24 22 21 26 26 C 1.38300 * 120.13476 * 0.25178 * 13 12 11 27 27 C 1.38103 * 120.07235 * 359.45128 * 26 13 12 28 28 H 0.97002 * 119.99895 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.03050 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.96708 * 180.02562 * 12 11 10 31 31 H 1.08999 * 109.46626 * 209.99947 * 14 13 12 32 32 H 1.09004 * 109.47318 * 329.99490 * 14 13 12 33 33 H 0.96993 * 120.00031 * 359.97438 * 17 15 14 34 34 H 1.09007 * 109.47104 * 299.99606 * 18 17 15 35 35 H 1.08996 * 109.47508 * 59.99551 * 18 17 15 36 36 H 1.07995 * 119.98953 * 0.02562 * 20 19 18 37 37 H 1.07995 * 120.01385 * 179.97438 * 24 22 21 38 38 H 1.08004 * 119.96372 * 179.70276 * 26 13 12 39 39 H 1.07998 * 120.03412 * 180.26808 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0011 10 6 3.9734 -2.4057 -0.1051 11 6 3.2234 -3.5745 -0.0921 12 6 3.8534 -4.7987 -0.1998 13 6 5.2298 -4.8616 -0.3200 14 6 5.9140 -6.1992 -0.4367 15 6 6.0215 -6.5835 -1.8898 16 8 5.5850 -5.8441 -2.7464 17 7 6.6026 -7.7487 -2.2376 18 6 6.7066 -8.1224 -3.6503 19 6 7.3909 -9.4601 -3.7670 20 6 6.6374 -10.6172 -3.8517 21 7 7.2368 -11.7901 -3.9590 22 6 8.5573 -11.8583 -3.9748 23 17 9.3457 -13.3992 -4.1091 24 6 9.3113 -10.6998 -3.8845 25 7 8.7106 -9.5274 -3.7832 26 6 5.9799 -3.6997 -0.3274 27 6 5.3553 -2.4722 -0.2263 28 1 -0.4850 0.8401 -0.0004 29 1 2.1486 -3.5260 0.0020 30 1 3.2706 -5.7080 -0.1902 31 1 6.9119 -6.1359 -0.0028 32 1 5.3332 -6.9522 0.0963 33 1 6.9520 -8.3398 -1.5525 34 1 5.7084 -8.1864 -4.0836 35 1 7.2866 -7.3694 -4.1837 36 1 5.5590 -10.5615 -3.8346 37 1 10.3897 -10.7549 -3.8970 38 1 7.0550 -3.7523 -0.4165 39 1 5.9414 -1.5651 -0.2365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001468753621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:10 Heat of formation + Delta-G solvation = -15.913243 kcal Electronic energy + Delta-G solvation = -25370.957742 eV Core-core repulsion = 21304.630793 eV Total energy + Delta-G solvation = -4066.326949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.41928 -41.10057 -40.40521 -38.34444 -37.98364 -36.34031 -35.30962 -34.50692 -33.29905 -32.48114 -31.77555 -29.06555 -27.73637 -26.53678 -25.99306 -23.96109 -23.67657 -22.43607 -21.31880 -19.80619 -19.16904 -19.11228 -18.58135 -18.24187 -17.49415 -16.77337 -16.58808 -16.43315 -16.15594 -15.87253 -15.68399 -15.56284 -15.19965 -15.07990 -14.57707 -14.42864 -14.28224 -14.06990 -13.89443 -13.70142 -13.27713 -13.03082 -12.92755 -12.74878 -12.54490 -12.49323 -12.39184 -12.32317 -12.29725 -11.91797 -11.25858 -11.04681 -10.86593 -10.41570 -10.28927 -10.13548 -9.75991 -8.95830 -8.49413 -6.21692 -0.69470 -0.20841 0.50561 0.61452 0.64458 1.30846 1.35478 1.51816 1.73405 2.04336 2.28588 2.49323 2.76741 2.83698 3.05038 3.08747 3.17865 3.20821 3.55952 3.79304 3.86889 4.06841 4.16490 4.22412 4.33544 4.47999 4.53902 4.60358 4.65748 4.73362 4.84872 4.95847 5.01328 5.28300 5.34736 5.39731 5.59168 5.76505 5.82032 5.86960 5.93175 6.27109 6.39526 6.54618 6.85049 7.31568 7.60324 8.62319 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.037718 B = 0.001524 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.163494 B =18365.047195 C =18585.211847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.400 4.400 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.117 3.883 11 C -0.239 4.239 12 C -0.063 4.063 13 C -0.138 4.138 14 C -0.079 4.079 15 C 0.517 3.483 16 O -0.573 6.573 17 N -0.715 5.715 18 C 0.178 3.822 19 C 0.066 3.934 20 C 0.096 3.904 21 N -0.452 5.452 22 C 0.118 3.882 23 Cl -0.004 7.004 24 C 0.080 3.920 25 N -0.422 5.422 26 C -0.060 4.060 27 C -0.195 4.195 28 H 0.284 0.716 29 H 0.106 0.894 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.415 0.585 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.206 0.794 37 H 0.207 0.793 38 H 0.153 0.847 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.142 -27.482 -5.473 35.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.155 6.155 10 C 0.068 3.932 11 C -0.259 4.259 12 C -0.081 4.081 13 C -0.139 4.139 14 C -0.118 4.118 15 C 0.305 3.695 16 O -0.451 6.451 17 N -0.369 5.369 18 C 0.053 3.947 19 C -0.075 4.075 20 C -0.064 4.064 21 N -0.169 5.169 22 C -0.049 4.049 23 Cl 0.024 6.976 24 C -0.081 4.081 25 N -0.138 5.138 26 C -0.077 4.077 27 C -0.214 4.214 28 H 0.094 0.906 29 H 0.124 0.876 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.251 0.749 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.223 0.777 37 H 0.224 0.776 38 H 0.171 0.829 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 21.801 -26.762 -6.090 35.051 hybrid contribution -0.394 0.265 0.060 0.479 sum 21.406 -26.497 -6.030 34.593 Atomic orbital electron populations 1.69733 1.06859 1.29548 1.50303 1.25284 0.95910 1.02136 0.95564 0.85211 0.78829 0.77422 0.79191 1.19306 1.18964 1.18693 1.20714 0.78175 0.96111 1.52592 0.90270 1.83506 1.21198 1.27540 1.83250 1.19698 0.93284 0.85103 0.95104 1.21265 1.00072 0.93389 1.11134 1.20930 0.94733 0.96138 0.96301 1.19305 0.92826 0.95119 1.06612 1.20548 1.04575 0.94625 0.92053 1.21100 0.76220 0.80136 0.92040 1.90783 1.48680 1.52267 1.53384 1.45765 1.61591 1.21782 1.07802 1.19977 1.00574 0.90086 0.84043 1.22272 0.90464 0.96972 0.97769 1.24071 1.03356 0.85582 0.93411 1.67935 1.09834 1.29194 1.09914 1.23167 0.91416 0.90285 1.00046 1.98451 1.76677 1.26942 1.95542 1.24062 1.03323 0.85378 0.95344 1.68476 1.10759 1.26754 1.07775 1.20957 1.00386 0.90273 0.96131 1.20507 0.90577 0.99856 1.10450 0.90597 0.87611 0.84646 0.84886 0.85271 0.74860 0.88219 0.90413 0.77745 0.77591 0.82947 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.30 13.96 21.61 0.30 -56.00 16 2 C 0.01 0.55 5.49 84.83 0.47 1.01 16 3 Si 0.97 46.65 28.62 68.60 1.96 48.62 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.40 -24.33 9.95 67.92 0.68 -23.65 16 8 H 0.08 5.05 5.44 -2.91 -0.02 5.04 16 9 O -0.25 -13.96 8.59 -22.66 -0.19 -14.15 16 10 C 0.12 5.71 6.65 22.58 0.15 5.86 16 11 C -0.24 -10.94 9.17 22.39 0.21 -10.73 16 12 C -0.06 -2.21 9.69 22.25 0.22 -1.99 16 13 C -0.14 -4.00 4.38 -19.83 -0.09 -4.09 16 14 C -0.08 -1.32 5.83 29.10 0.17 -1.15 16 15 C 0.52 10.55 7.82 87.66 0.69 11.24 16 16 O -0.57 -18.39 16.03 -3.03 -0.05 -18.44 16 17 N -0.71 -8.94 5.55 -466.79 -2.59 -11.53 16 18 C 0.18 2.27 6.00 85.64 0.51 2.78 16 19 C 0.07 0.71 6.15 42.54 0.26 0.98 16 20 C 0.10 0.93 10.86 84.67 0.92 1.85 16 21 N -0.45 -6.01 10.49 -186.09 -1.95 -7.96 16 22 C 0.12 1.35 7.29 84.70 0.62 1.97 16 23 Cl 0.00 -0.05 29.13 -2.72 -0.08 -0.12 16 24 C 0.08 0.75 11.01 84.72 0.93 1.68 16 25 N -0.42 -5.20 10.42 -183.20 -1.91 -7.11 16 26 C -0.06 -1.86 9.69 22.25 0.22 -1.64 16 27 C -0.19 -7.77 9.99 22.39 0.22 -7.54 16 28 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 29 H 0.11 5.31 5.64 -2.91 -0.02 5.30 16 30 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 31 H 0.13 1.36 8.08 -2.39 -0.02 1.34 16 32 H 0.13 1.42 8.08 -2.38 -0.02 1.40 16 33 H 0.41 2.84 8.46 -92.71 -0.78 2.05 16 34 H 0.10 1.18 8.05 -2.38 -0.02 1.16 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.21 0.70 8.06 -2.91 -0.02 0.68 16 38 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -80.67 364.58 2.00 -78.67 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.34 Total: 11.47 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: 6.17 Total: -23.44 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -6.15 Total: -82.60 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.24 Total: -32.59 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.96 Total: 48.62 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.12 kcal Total: -80.67 2.00 -78.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468753621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.756 kcal (2) G-P(sol) polarization free energy of solvation -80.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds