Wall clock time and date at job start Wed Apr 1 2020 04:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00198 * 2 1 4 4 O 1.20820 * 119.99779 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00021 * 179.97438 * 3 2 1 6 6 N 1.46493 * 109.47153 * 180.02562 * 5 3 2 7 7 C 1.36867 * 120.00057 * 262.87809 * 6 5 3 8 8 H 1.08001 * 120.00396 * 214.10435 * 7 6 5 9 9 C 1.39042 * 119.99822 * 34.10351 * 7 6 5 10 10 N 1.31365 * 120.00057 * 5.15406 * 9 7 6 11 11 Si 1.86804 * 119.99963 * 185.16121 * 9 7 6 12 12 H 1.48499 * 109.46992 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47465 * 119.99909 * 11 9 7 14 14 H 1.48498 * 109.46944 * 239.99974 * 11 9 7 15 15 C 1.34778 * 120.00511 * 82.88027 * 6 5 3 16 16 O 1.21629 * 119.99644 * 6.13845 * 15 6 5 17 17 C 1.47502 * 120.00407 * 186.14044 * 15 6 5 18 18 C 1.39830 * 120.03000 * 206.21115 * 17 15 6 19 19 C 1.37118 * 119.96746 * 179.97438 * 18 17 15 20 20 C 1.39571 * 120.02935 * 0.02562 * 19 18 17 21 21 C 1.48205 * 119.96506 * 179.97438 * 20 19 18 22 22 C 1.36618 * 123.97619 * 179.97438 * 21 20 19 23 23 S 1.72092 * 104.12764 * 180.28196 * 22 21 20 24 24 N 1.56442 * 96.05787 * 359.62866 * 23 22 21 25 25 N 1.27490 * 109.57117 * 0.38293 * 24 23 22 26 26 C 1.39566 * 120.06339 * 0.25109 * 20 19 18 27 27 C 1.37115 * 120.03211 * 359.49007 * 26 20 19 28 28 H 1.08996 * 109.47499 * 59.99622 * 1 2 3 29 29 H 1.08997 * 109.47731 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.47105 * 299.99810 * 1 2 3 31 31 H 1.09003 * 109.47075 * 60.00227 * 5 3 2 32 32 H 1.09009 * 109.47524 * 300.00580 * 5 3 2 33 33 H 0.97004 * 119.99785 * 179.97438 * 10 9 7 34 34 H 1.07997 * 120.02043 * 359.95519 * 18 17 15 35 35 H 1.07995 * 119.98462 * 180.02562 * 19 18 17 36 36 H 1.08009 * 127.93608 * 0.02562 * 22 21 20 37 37 H 1.07999 * 119.98787 * 179.72549 * 26 20 19 38 38 H 1.08003 * 120.01656 * 180.22851 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 0.0011 7 6 4.3171 3.2944 -1.1748 8 1 5.0924 4.0462 -1.1892 9 6 3.6597 2.9513 -2.3509 10 7 2.6493 2.1124 -2.3179 11 14 4.2133 3.6830 -3.9781 12 1 5.3635 4.5930 -3.7457 13 1 4.6229 2.5916 -4.8979 14 1 3.0931 4.4467 -4.5840 15 6 4.0337 3.3666 1.1594 16 8 3.8446 2.7935 2.2154 17 6 4.3197 4.8136 1.1466 18 6 4.9054 5.4211 2.2615 19 6 5.1712 6.7662 2.2480 20 6 4.8569 7.5290 1.1222 21 6 5.1443 8.9828 1.1093 22 6 4.8717 9.8057 0.0533 23 16 5.4100 11.3539 0.5774 24 7 5.8952 10.8905 1.9906 25 7 5.6965 9.6379 2.1207 26 6 4.2670 6.9250 0.0109 27 6 4.0049 5.5792 0.0196 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 3.9563 0.7805 -0.8892 32 1 3.9557 0.7807 0.8908 33 1 2.1904 1.8733 -3.1384 34 1 5.1481 4.8312 3.1330 35 1 5.6240 7.2356 3.1088 36 1 4.4251 9.5437 -0.8945 37 1 4.0202 7.5172 -0.8579 38 1 3.5517 5.1114 -0.8420 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530494367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:37 Heat of formation + Delta-G solvation = 1.948636 kcal Electronic energy + Delta-G solvation = -27615.603378 eV Core-core repulsion = 23552.094684 eV Total energy + Delta-G solvation = -4063.508693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97188 -39.72998 -38.91167 -37.54214 -35.48182 -34.69980 -33.06831 -31.76851 -30.80229 -29.82126 -28.31792 -27.06253 -26.25770 -25.20705 -23.39384 -22.10367 -21.15180 -20.25878 -19.47181 -18.63375 -17.88965 -16.65602 -16.40050 -16.16894 -15.77175 -15.59660 -15.27294 -15.08137 -14.88920 -14.56763 -14.11773 -13.75599 -13.47510 -13.11288 -12.94910 -12.63190 -12.51414 -12.45473 -12.13231 -12.04983 -11.80531 -11.44039 -11.34841 -11.26742 -10.96602 -10.81198 -10.60374 -10.49999 -10.25770 -10.21123 -9.95721 -9.82063 -9.48869 -9.13058 -8.80579 -8.53661 -8.05310 -7.91345 -6.64617 -4.26798 0.05306 0.98662 1.06191 1.55432 1.91606 2.45149 2.97746 3.07251 3.10595 3.48051 3.67361 3.89114 3.89697 3.96490 4.42139 4.54769 4.67556 4.84915 4.91130 5.23830 5.38085 5.48605 5.67599 5.75221 5.78631 5.91597 5.92569 6.05909 6.15608 6.28103 6.34840 6.47128 6.56285 6.77953 6.88137 7.09190 7.16901 7.36816 7.44728 7.54960 7.66309 8.09676 8.79339 9.09571 9.19842 9.60633 10.41675 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.003117 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.770478 B = 8981.517823 C =10132.208072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.378 6.378 3 C 0.484 3.516 4 O -0.492 6.492 5 C 0.156 3.844 6 N -0.421 5.421 7 C -0.340 4.340 8 H 0.106 0.894 9 C 0.044 3.956 10 N -0.859 5.859 11 Si 0.922 3.078 12 H -0.264 1.264 13 H -0.277 1.277 14 H -0.278 1.278 15 C 0.512 3.488 16 O -0.595 6.595 17 C -0.076 4.076 18 C -0.083 4.083 19 C -0.100 4.100 20 C -0.029 4.029 21 C 0.084 3.916 22 C -0.292 4.292 23 S 0.415 5.585 24 N -0.289 5.289 25 N -0.229 5.229 26 C -0.114 4.114 27 C -0.074 4.074 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.275 0.725 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.200 0.800 37 H 0.122 0.878 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 8.829 -1.636 9.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.295 6.295 3 C 0.325 3.675 4 O -0.376 6.376 5 C 0.031 3.969 6 N -0.138 5.138 7 C -0.467 4.467 8 H 0.123 0.877 9 C -0.163 4.163 10 N -0.495 5.495 11 Si 0.748 3.252 12 H -0.188 1.188 13 H -0.203 1.203 14 H -0.203 1.203 15 C 0.303 3.697 16 O -0.481 6.481 17 C -0.079 4.079 18 C -0.102 4.102 19 C -0.119 4.119 20 C -0.033 4.033 21 C -0.058 4.058 22 C -0.448 4.448 23 S 0.551 5.449 24 N -0.268 5.268 25 N -0.098 5.098 26 C -0.134 4.134 27 C -0.092 4.092 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.217 0.783 37 H 0.140 0.860 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.342 10.270 -0.282 10.538 hybrid contribution -0.732 -1.003 -1.745 2.141 sum 1.610 9.267 -2.027 9.622 Atomic orbital electron populations 1.22913 0.78666 1.01731 1.01636 1.86440 1.21692 1.35528 1.85889 1.23718 0.92112 0.80647 0.71013 1.90507 1.66316 1.36257 1.44524 1.20383 0.87507 0.85653 1.03370 1.43057 1.56706 1.07744 1.06317 1.19717 1.19118 1.23716 0.84197 0.87661 1.25451 0.94157 0.96613 1.00126 1.69614 1.18630 1.32140 1.29085 0.85918 0.78891 0.79255 0.81152 1.18771 1.20271 1.20345 1.18150 0.81345 0.86242 0.83999 1.90649 1.56098 1.70161 1.31167 1.20154 0.98892 0.94471 0.94380 1.21066 0.97023 0.94110 0.98002 1.20898 1.00116 0.93449 0.97431 1.17823 1.02794 0.86594 0.96096 1.20977 0.99009 0.96983 0.88856 1.28324 1.10939 0.98830 1.06668 1.81317 1.41621 1.12886 1.09118 1.78786 1.22915 1.09122 1.15983 1.71390 1.14096 0.98480 1.25823 1.20968 1.00161 0.95284 0.96947 1.22296 0.95388 0.92182 0.99317 0.92629 0.89683 0.93179 0.86671 0.89802 0.91420 0.85113 0.85254 0.78280 0.85997 0.81048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -7.87 10.56 -39.25 -0.41 -8.29 16 3 C 0.48 11.54 5.99 36.00 0.22 11.75 16 4 O -0.49 -13.15 15.04 -18.75 -0.28 -13.43 16 5 C 0.16 3.56 5.18 -5.20 -0.03 3.54 16 6 N -0.42 -10.03 2.15 -117.29 -0.25 -10.28 16 7 C -0.34 -7.77 6.12 -15.01 -0.09 -7.86 16 8 H 0.11 2.30 6.20 -52.49 -0.33 1.98 16 9 C 0.04 0.99 5.13 -17.45 -0.09 0.90 16 10 N -0.86 -20.73 8.72 55.50 0.48 -20.25 16 11 Si 0.92 17.60 29.56 -169.99 -5.02 12.58 16 12 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 13 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 14 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 15 C 0.51 12.36 7.15 -12.48 -0.09 12.27 16 16 O -0.59 -15.55 16.29 5.25 0.09 -15.47 16 17 C -0.08 -1.58 5.54 -104.93 -0.58 -2.17 16 18 C -0.08 -1.53 9.55 -39.39 -0.38 -1.91 16 19 C -0.10 -1.65 9.61 -39.49 -0.38 -2.03 16 20 C -0.03 -0.46 5.88 -104.81 -0.62 -1.07 16 21 C 0.08 1.19 6.76 -84.05 -0.57 0.62 16 22 C -0.29 -3.12 10.76 30.15 0.32 -2.79 16 23 S 0.41 3.87 23.38 -107.50 -2.51 1.35 16 24 N -0.29 -3.89 12.51 60.35 0.76 -3.13 16 25 N -0.23 -3.48 11.15 32.46 0.36 -3.12 16 26 C -0.11 -1.81 9.47 -39.49 -0.37 -2.19 16 27 C -0.07 -1.41 7.75 -39.39 -0.31 -1.72 16 28 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.84 8.13 -51.92 -0.42 0.42 16 31 H 0.12 2.55 7.10 -51.93 -0.37 2.18 16 32 H 0.08 1.80 7.56 -51.92 -0.39 1.41 16 33 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 34 H 0.13 2.35 7.86 -52.49 -0.41 1.94 16 35 H 0.13 1.96 7.74 -52.49 -0.41 1.56 16 36 H 0.20 1.57 7.15 -52.48 -0.38 1.19 16 37 H 0.12 1.55 6.82 -52.49 -0.36 1.19 16 38 H 0.17 3.58 5.30 -52.48 -0.28 3.30 16 LS Contribution 344.59 15.07 5.19 5.19 Total: -1.00 -30.82 344.59 -6.82 -37.64 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -3.32 Total: 8.03 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -1.89 Total: 9.17 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 1.35 Total: -36.78 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -0.61 Total: -37.19 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.02 Total: 12.58 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -2.51 Total: 1.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.82 -6.82 -37.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530494367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.585 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds