Wall clock time and date at job start Wed Apr 1 2020 04:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46965 * 208.60770 * 3 2 1 5 5 C 1.36895 * 119.99996 * 266.18507 * 4 3 2 6 6 H 1.07994 * 120.00017 * 142.65899 * 5 4 3 7 7 C 1.38992 * 119.99460 * 322.38127 * 5 4 3 8 8 N 1.31412 * 119.99686 * 158.57088 * 7 5 4 9 9 Si 1.86798 * 120.00438 * 338.57656 * 7 5 4 10 10 H 1.48505 * 109.46984 * 89.61096 * 9 7 5 11 11 H 1.48498 * 109.46988 * 209.61214 * 9 7 5 12 12 H 1.48504 * 109.46947 * 329.61128 * 9 7 5 13 13 C 1.34777 * 120.00273 * 86.18125 * 4 3 2 14 14 O 1.21770 * 119.99907 * 174.08228 * 13 4 3 15 15 C 1.46351 * 119.99953 * 354.07853 * 13 4 3 16 16 C 1.34481 * 124.92357 * 174.89911 * 15 13 4 17 17 C 1.39634 * 114.28567 * 180.02562 * 16 15 13 18 18 C 1.39017 * 113.01579 * 0.02562 * 17 16 15 19 19 S 1.70826 * 110.42890 * 359.72778 * 18 17 16 20 20 N 1.38332 * 119.07927 * 179.97438 * 18 17 16 21 21 C 1.46500 * 119.32574 * 180.02562 * 20 18 17 22 22 C 1.34064 * 121.34716 * 359.97179 * 20 18 17 23 23 O 1.21579 * 118.93383 * 180.02562 * 22 20 18 24 24 N 1.34271 * 122.13657 * 0.05440 * 22 20 18 25 25 C 1.46497 * 119.52161 * 179.97438 * 24 22 20 26 26 C 1.34593 * 120.95817 * 359.94669 * 24 22 20 27 27 O 1.21684 * 120.51922 * 180.02562 * 26 24 22 28 28 H 4.40639 * 5.51343 * 179.97438 * 4 1 2 29 29 H 1.08997 * 109.47405 * 88.60684 * 3 2 1 30 30 H 1.09007 * 109.47136 * 328.60183 * 3 2 1 31 31 H 0.96994 * 120.00227 * 179.97438 * 8 7 5 32 32 H 1.07997 * 122.85517 * 359.97438 * 16 15 13 33 33 H 1.09005 * 109.47501 * 89.99837 * 21 20 18 34 34 H 1.09000 * 109.47230 * 209.99647 * 21 20 18 35 35 H 1.08997 * 109.47251 * 329.99947 * 21 20 18 36 36 H 1.08997 * 109.47427 * 89.99505 * 25 24 22 37 37 H 1.09000 * 109.47317 * 209.99923 * 25 24 22 38 38 H 1.09006 * 109.46989 * 329.99667 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2134 0.6613 5 6 3.4358 2.3234 -0.0808 6 1 3.2123 3.3074 0.3040 7 6 4.0353 2.1841 -1.3270 8 7 3.9496 3.1541 -2.2094 9 14 4.9626 0.6180 -1.7476 10 1 4.0275 -0.3630 -2.3547 11 1 6.0481 0.9294 -2.7119 12 1 5.5493 0.0428 -0.5106 13 6 3.2851 1.2365 2.0004 14 8 3.7910 2.2041 2.5393 15 6 2.8413 0.0985 2.8066 16 6 3.0310 -0.0265 4.1321 17 6 2.5164 -1.2045 4.6773 18 6 1.9058 -2.0199 3.7313 19 16 1.9796 -1.2976 2.1850 20 7 1.3525 -3.2214 4.1360 21 6 0.7082 -4.0851 3.1435 22 6 1.3948 -3.6120 5.4178 23 8 0.8949 -4.6769 5.7249 24 7 1.9707 -2.8651 6.3735 25 6 1.9838 -3.3474 7.7567 26 6 2.5366 -1.6800 6.0790 27 8 3.0568 -1.0098 6.9514 28 1 -1.0502 -0.0003 -0.0004 29 1 3.0094 -0.0242 -1.0273 30 1 3.0098 -0.8764 0.5354 31 1 4.3683 3.0571 -3.0790 32 1 3.5389 0.7203 4.7243 33 1 1.4453 -4.7704 2.7250 34 1 -0.0885 -4.6557 3.6209 35 1 0.2883 -3.4719 2.3462 36 1 2.8840 -3.9379 7.9272 37 1 1.9727 -2.4969 8.4383 38 1 1.1043 -3.9665 7.9340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001539539646.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:01 Heat of formation + Delta-G solvation = 43.920238 kcal Electronic energy + Delta-G solvation = -28042.758382 eV Core-core repulsion = 23981.069714 eV Total energy + Delta-G solvation = -4061.688668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.33196 -39.40685 -39.08880 -37.97364 -35.94966 -35.44301 -35.19857 -33.03348 -31.90037 -30.15591 -28.47059 -27.19907 -27.19436 -25.85372 -24.56628 -23.60418 -21.64254 -20.68083 -18.93982 -18.44464 -18.19935 -17.56311 -17.40539 -17.04327 -16.80597 -16.10497 -15.84215 -15.54960 -15.13268 -15.08691 -14.72298 -14.20312 -14.01434 -13.89084 -13.65646 -13.32220 -13.16963 -13.00347 -12.86300 -12.74491 -12.62889 -12.46161 -12.12058 -11.39871 -11.22054 -11.13855 -10.74811 -10.67355 -10.50656 -10.27590 -10.11293 -10.01315 -9.94690 -9.41577 -8.96049 -8.53283 -8.26615 -8.05775 -6.65437 -4.21396 0.35652 0.90226 1.41452 1.65203 1.84327 2.07699 2.65928 2.77483 2.88205 2.97328 3.07355 3.11975 3.24360 3.81247 3.89502 4.02830 4.24489 4.46166 4.62660 4.65511 4.86658 4.90558 5.00831 5.06025 5.10266 5.19935 5.24269 5.28755 5.42077 5.44941 5.65235 5.70377 5.94573 6.07803 6.16698 6.24376 6.93951 7.23429 7.25885 7.68745 7.78060 7.96007 8.18838 8.64351 8.97333 9.38622 10.45306 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.003756 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.059609 B = 7453.570676 C = 8241.494606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.195 4.195 3 C 0.175 3.825 4 N -0.448 5.448 5 C -0.311 4.311 6 H 0.114 0.886 7 C 0.064 3.936 8 N -0.845 5.845 9 Si 0.860 3.140 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.255 1.255 13 C 0.534 3.466 14 O -0.537 6.537 15 C -0.249 4.249 16 C 0.001 3.999 17 C -0.232 4.232 18 C 0.013 3.987 19 S 0.301 5.699 20 N -0.506 5.506 21 C 0.077 3.923 22 C 0.706 3.294 23 O -0.545 6.545 24 N -0.557 5.557 25 C 0.082 3.918 26 C 0.579 3.421 27 O -0.498 6.498 28 H 0.219 0.781 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.279 0.721 32 H 0.165 0.835 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.344 -16.359 6.898 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.199 4.199 3 C 0.049 3.951 4 N -0.168 5.168 5 C -0.439 4.439 6 H 0.132 0.868 7 C -0.144 4.144 8 N -0.479 5.479 9 Si 0.686 3.314 10 H -0.194 1.194 11 H -0.202 1.202 12 H -0.179 1.179 13 C 0.322 3.678 14 O -0.418 6.418 15 C -0.369 4.369 16 C -0.029 4.029 17 C -0.251 4.251 18 C -0.206 4.206 19 S 0.568 5.432 20 N -0.229 5.229 21 C -0.065 4.065 22 C 0.408 3.592 23 O -0.420 6.420 24 N -0.300 5.300 25 C -0.059 4.059 26 C 0.370 3.630 27 O -0.371 6.371 28 H 0.236 0.764 29 H 0.136 0.864 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.182 0.818 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.514 -16.499 6.323 19.201 hybrid contribution 0.763 -0.431 0.944 1.288 sum -6.751 -16.930 7.267 19.622 Atomic orbital electron populations 1.24791 0.95567 0.99473 0.99985 1.23308 0.94673 1.01070 1.00838 1.19234 0.85007 0.89543 1.01302 1.43564 1.56450 1.12063 1.04754 1.19084 1.39582 0.86416 0.98771 0.86836 1.25391 0.95865 0.97715 0.95426 1.69715 1.39375 1.33432 1.05404 0.87262 0.80975 0.83294 0.79854 1.19391 1.20220 1.17899 1.16737 0.82921 0.85993 0.82101 1.90760 1.46380 1.34002 1.70649 1.24225 1.12291 1.01926 0.98500 1.19646 0.95769 0.94793 0.92697 1.19480 1.14129 0.99164 0.92279 1.24758 0.99929 0.90464 1.05454 1.84391 1.51873 1.10405 0.96522 1.43776 1.54018 1.17612 1.07538 1.22139 0.99261 0.94592 0.90474 1.15418 0.79795 0.83944 0.80075 1.90988 1.49832 1.21545 1.79652 1.45895 1.53150 1.20049 1.10953 1.21917 1.04196 1.01491 0.78288 1.17993 0.77145 0.79521 0.88324 1.90841 1.42496 1.54656 1.49091 0.76405 0.86448 0.89517 0.90989 0.81785 0.90251 0.88123 0.89508 0.90818 0.88815 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 19.13 29.55 0.57 -1.86 16 2 C -0.19 -3.20 10.70 -37.12 -0.40 -3.60 16 3 C 0.17 3.22 4.14 -6.83 -0.03 3.19 16 4 N -0.45 -10.21 2.14 -119.54 -0.26 -10.46 16 5 C -0.31 -8.22 9.33 -15.01 -0.14 -8.36 16 6 H 0.11 3.37 7.96 -52.49 -0.42 2.95 16 7 C 0.06 1.64 5.30 -17.45 -0.09 1.55 16 8 N -0.84 -22.61 13.96 55.50 0.77 -21.84 16 9 Si 0.86 18.19 25.21 -169.99 -4.29 13.90 16 10 H -0.27 -5.02 6.42 56.52 0.36 -4.66 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 12 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 13 C 0.53 12.10 7.53 -13.00 -0.10 12.00 16 14 O -0.54 -14.09 16.68 5.13 0.09 -14.00 16 15 C -0.25 -4.49 6.10 -37.65 -0.23 -4.72 16 16 C 0.00 0.02 9.82 -40.39 -0.40 -0.38 16 17 C -0.23 -3.61 6.06 -105.07 -0.64 -4.24 16 18 C 0.01 0.18 6.95 -14.33 -0.10 0.08 16 19 S 0.30 4.07 14.84 -107.50 -1.59 2.47 16 20 N -0.51 -6.02 3.04 -128.22 -0.39 -6.41 16 21 C 0.08 0.62 10.17 59.85 0.61 1.23 16 22 C 0.71 9.30 8.09 -88.01 -0.71 8.59 16 23 O -0.55 -7.65 15.13 5.30 0.08 -7.57 16 24 N -0.56 -7.38 2.94 -129.51 -0.38 -7.76 16 25 C 0.08 0.82 10.08 59.85 0.60 1.43 16 26 C 0.58 8.93 7.66 -12.33 -0.09 8.83 16 27 O -0.50 -8.67 16.64 5.20 0.09 -8.58 16 28 H 0.22 2.01 7.80 -54.08 -0.42 1.58 16 29 H 0.12 2.25 3.24 -51.93 -0.17 2.08 16 30 H 0.09 1.37 4.79 -24.18 -0.12 1.26 16 31 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.16 2.91 8.01 -52.49 -0.42 2.49 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.76 7.31 -51.93 -0.38 0.38 16 35 H 0.09 0.56 7.37 -51.93 -0.38 0.17 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.90 7.40 -51.93 -0.38 0.51 16 38 H 0.09 0.83 7.33 -51.93 -0.38 0.45 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -32.72 338.10 -5.02 -37.74 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -3.09 Total: 3.67 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: -1.15 Total: 13.74 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.25 Total: -46.47 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: 0.25 Total: -30.15 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -4.29 Total: 13.90 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.59 Total: 2.47 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.72 -5.02 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539539646.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.662 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds