Wall clock time and date at job start Wed Apr 1 2020 04:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30822 * 119.22987 * 2 1 4 4 C 1.33775 * 121.71920 * 179.72366 * 3 2 1 5 5 C 1.40645 * 120.83205 * 179.74640 * 4 3 2 6 6 Cl 1.73609 * 120.10296 * 0.53218 * 5 4 3 7 7 C 1.36238 * 119.79468 * 180.25774 * 5 4 3 8 8 C 1.39326 * 121.07385 * 0.27937 * 7 5 4 9 9 C 1.36137 * 120.85429 * 359.97438 * 8 7 5 10 10 C 1.40549 * 119.64603 * 0.02562 * 9 8 7 11 11 C 1.40499 * 121.21578 * 180.02562 * 10 9 8 12 12 C 1.39037 * 117.96078 * 179.97438 * 11 10 9 13 13 C 1.47763 * 120.27206 * 180.02562 * 12 11 10 14 14 O 1.21562 * 120.00547 * 173.69538 * 13 12 11 15 15 N 1.34781 * 119.99746 * 353.69586 * 13 12 11 16 16 C 1.46500 * 119.99969 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47062 * 180.02562 * 16 15 13 18 18 O 1.21289 * 120.00052 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00167 * 179.97438 * 17 16 15 20 20 C 1.37088 * 120.00234 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00051 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00288 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00309 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99557 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47039 * 90.00160 * 24 22 20 26 26 H 1.48502 * 109.46890 * 209.99771 * 24 22 20 27 27 H 1.48497 * 109.47211 * 329.99646 * 24 22 20 28 28 H 1.08996 * 109.46662 * 263.33332 * 1 2 3 29 29 H 1.09002 * 109.47051 * 23.33394 * 1 2 3 30 30 H 1.09000 * 109.47129 * 143.32945 * 1 2 3 31 31 H 1.07993 * 119.46362 * 180.29839 * 7 5 4 32 32 H 1.08007 * 119.57020 * 180.02562 * 8 7 5 33 33 H 1.08000 * 120.17551 * 180.02562 * 9 8 7 34 34 H 1.07995 * 121.02153 * 0.02562 * 11 10 9 35 35 H 0.97001 * 119.99777 * 359.97438 * 15 13 12 36 36 H 1.08995 * 109.46859 * 299.99935 * 16 15 13 37 37 H 1.09002 * 109.46964 * 59.99881 * 16 15 13 38 38 H 0.97005 * 119.99972 * 359.97438 * 19 17 16 39 39 H 0.97002 * 119.99800 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1459 1.1416 0.0000 4 6 3.4823 1.1997 0.0055 5 6 4.1501 2.4376 0.0000 6 17 3.2416 3.9170 0.0000 7 6 5.5120 2.4721 0.0005 8 6 6.2611 1.2973 0.0004 9 6 5.6511 0.0803 0.0005 10 6 4.2476 0.0061 0.0000 11 6 3.5839 -1.2322 0.0006 12 6 2.1935 -1.2266 0.0006 13 6 1.4435 -2.4998 0.0018 14 8 0.2334 -2.4924 0.1174 15 7 2.1011 -3.6694 -0.1254 16 6 1.3576 -4.9317 -0.1237 17 6 2.3196 -6.0815 -0.2782 18 8 3.5091 -5.8675 -0.3802 19 7 1.8581 -7.3475 -0.3030 20 6 2.7331 -8.3934 -0.4441 21 1 3.7923 -8.2028 -0.5349 22 6 2.2574 -9.6987 -0.4691 23 7 3.0962 -10.7013 -0.6039 24 14 0.4255 -10.0283 -0.3113 25 1 -0.1934 -10.0403 -1.6612 26 1 0.2139 -11.3450 0.3419 27 1 -0.2003 -8.9617 0.5108 28 1 -0.3632 -0.1193 1.0207 29 1 -0.3633 0.9436 -0.4071 30 1 -0.3633 -0.8243 -0.6137 31 1 6.0192 3.4255 0.0012 32 1 7.3398 1.3530 0.0012 33 1 6.2425 -0.8234 0.0009 34 1 4.1366 -2.1600 0.0018 35 1 3.0667 -3.6753 -0.2180 36 1 0.8178 -5.0341 0.8177 37 1 0.6486 -4.9369 -0.9515 38 1 0.9068 -7.5187 -0.2210 39 1 2.7640 -11.6125 -0.6217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544135792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:36 Heat of formation + Delta-G solvation = -17.616851 kcal Electronic energy + Delta-G solvation = -26334.511157 eV Core-core repulsion = 22268.110334 eV Total energy + Delta-G solvation = -4066.400823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42635 -39.78226 -38.50975 -37.50940 -36.67638 -34.86494 -34.10782 -33.51508 -32.17824 -31.88606 -30.60703 -28.41014 -27.64618 -25.24010 -24.18399 -22.99787 -22.44066 -20.97676 -19.81587 -19.08664 -18.53537 -17.81853 -17.26206 -16.36219 -15.92976 -15.76658 -15.37054 -15.20771 -15.03584 -14.96110 -14.72964 -14.12358 -14.02590 -13.98588 -13.32961 -13.24464 -13.16344 -12.61439 -12.55169 -12.33398 -12.31109 -12.25785 -12.15601 -11.98568 -11.57327 -11.29875 -11.14639 -10.70444 -10.57691 -10.16759 -10.13244 -9.77735 -9.63673 -9.24719 -8.96249 -8.88036 -8.53503 -8.38466 -6.47831 -4.00861 -0.23422 0.23080 1.35401 1.80817 2.23077 2.93579 2.95757 2.98148 3.00618 3.08394 3.46303 3.66317 3.74695 3.97203 4.17336 4.20915 4.33205 4.39188 4.44503 4.65751 4.80400 4.83183 5.06782 5.09662 5.26993 5.36119 5.45294 5.56225 5.63831 5.66861 5.68108 5.69444 5.78859 5.88811 5.93092 6.12761 6.31391 6.44166 7.35192 7.46163 7.57074 7.91449 8.11445 8.36669 8.73828 9.21705 9.53867 10.64046 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022042 B = 0.002152 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.988747 B =13007.932912 C =14249.758005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.219 3.781 3 N -0.473 5.473 4 C 0.155 3.845 5 C -0.024 4.024 6 Cl -0.046 7.046 7 C -0.081 4.081 8 C -0.118 4.118 9 C -0.075 4.075 10 C -0.110 4.110 11 C -0.008 4.008 12 C -0.179 4.179 13 C 0.561 3.439 14 O -0.531 6.531 15 N -0.700 5.700 16 C 0.106 3.894 17 C 0.435 3.565 18 O -0.581 6.581 19 N -0.573 5.573 20 C -0.312 4.312 21 H 0.122 0.878 22 C 0.046 3.954 23 N -0.872 5.872 24 Si 0.879 3.121 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.267 1.267 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.154 0.846 35 H 0.410 0.590 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.375 0.625 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 24.519 1.508 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.066 3.934 3 N -0.182 5.182 4 C 0.032 3.968 5 C -0.052 4.052 6 Cl -0.017 7.017 7 C -0.101 4.101 8 C -0.137 4.137 9 C -0.094 4.094 10 C -0.113 4.113 11 C -0.035 4.035 12 C -0.184 4.184 13 C 0.347 3.653 14 O -0.410 6.410 15 N -0.355 5.355 16 C -0.021 4.021 17 C 0.222 3.778 18 O -0.466 6.466 19 N -0.210 5.210 20 C -0.440 4.440 21 H 0.140 0.860 22 C -0.159 4.159 23 N -0.510 5.510 24 Si 0.705 3.295 25 H -0.193 1.193 26 H -0.199 1.199 27 H -0.192 1.192 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.172 0.828 35 H 0.249 0.751 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.208 0.792 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.569 25.344 1.497 25.395 hybrid contribution -0.377 -1.209 0.114 1.272 sum 0.192 24.135 1.612 24.189 Atomic orbital electron populations 1.21136 0.86948 1.04138 1.04585 1.21649 0.97851 0.85916 0.87989 1.67965 1.07411 1.28025 1.14769 1.18598 0.89853 0.91388 0.96955 1.20466 0.91917 0.86640 1.06136 1.98379 1.75109 1.31640 1.96566 1.20928 0.91459 1.00127 0.97598 1.20852 1.00718 0.91347 1.00739 1.21222 0.92423 0.99193 0.96539 1.18654 0.94889 0.93029 1.04700 1.22140 0.93374 0.97879 0.90083 1.20847 0.94042 0.95342 1.08159 1.17837 0.87117 0.83042 0.77261 1.90733 1.13274 1.86937 1.50036 1.45610 1.12218 1.04751 1.72873 1.21034 0.94438 0.83000 1.03650 1.19582 0.89125 0.83720 0.85423 1.90531 1.16371 1.83836 1.55854 1.42118 1.08919 1.05657 1.64350 1.19434 0.93074 0.83461 1.48040 0.86043 1.25081 0.98566 0.95221 0.97013 1.69615 1.34591 0.99404 1.47422 0.86669 0.84531 0.79112 0.79174 1.19331 1.19918 1.19199 0.89553 0.91070 0.87509 0.84134 0.84263 0.83985 0.82838 0.75072 0.89308 0.89286 0.79181 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 8.82 36.01 0.32 -0.97 16 2 C 0.22 2.81 6.82 -82.14 -0.56 2.25 16 3 N -0.47 -6.23 9.66 -6.91 -0.07 -6.30 16 4 C 0.16 1.87 6.61 -84.76 -0.56 1.31 16 5 C -0.02 -0.25 6.33 -39.39 -0.25 -0.50 16 6 Cl -0.05 -0.48 28.51 -51.86 -1.48 -1.95 16 7 C -0.08 -0.62 9.71 -39.90 -0.39 -1.01 16 8 C -0.12 -0.79 9.95 -39.93 -0.40 -1.19 16 9 C -0.07 -0.60 9.77 -39.47 -0.39 -0.98 16 10 C -0.11 -1.17 5.74 -106.82 -0.61 -1.79 16 11 C -0.01 -0.09 9.38 -38.43 -0.36 -0.45 16 12 C -0.18 -2.25 5.89 -104.83 -0.62 -2.86 16 13 C 0.56 7.92 7.69 -12.36 -0.10 7.83 16 14 O -0.53 -8.33 13.31 5.31 0.07 -8.26 16 15 N -0.70 -10.20 5.48 -62.46 -0.34 -10.54 16 16 C 0.11 1.68 6.15 -5.19 -0.03 1.65 16 17 C 0.44 9.00 7.85 -10.99 -0.09 8.92 16 18 O -0.58 -13.82 15.24 5.55 0.08 -13.74 16 19 N -0.57 -12.71 5.09 -10.96 -0.06 -12.77 16 20 C -0.31 -8.29 10.16 -14.94 -0.15 -8.45 16 21 H 0.12 3.69 7.39 -52.48 -0.39 3.30 16 22 C 0.05 1.19 5.50 -17.47 -0.10 1.10 16 23 N -0.87 -24.27 13.96 55.50 0.77 -23.50 16 24 Si 0.88 18.39 27.74 -169.99 -4.71 13.68 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 27 H -0.27 -5.07 6.52 56.52 0.37 -4.70 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.11 1.33 5.81 -51.93 -0.30 1.02 16 31 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.14 0.54 8.06 -52.48 -0.42 0.11 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.15 1.38 6.53 -52.49 -0.34 1.03 16 35 H 0.41 5.80 5.55 -40.82 -0.23 5.57 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.37 7.30 5.76 -40.82 -0.24 7.06 16 39 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -31.89 352.18 -8.32 -40.21 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -3.62 Total: 13.00 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -4.27 Total: 4.87 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.31 Total: -53.10 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.16 Total: -22.00 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.71 Total: 13.68 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.48 Total: -1.95 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.89 -8.32 -40.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544135792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.590 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds