Wall clock time and date at job start Wed Apr 1 2020 04:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30822 * 119.22987 * 2 1 4 4 C 1.33775 * 121.71920 * 179.72366 * 3 2 1 5 5 C 1.40645 * 120.83205 * 179.74640 * 4 3 2 6 6 Cl 1.73609 * 120.10296 * 0.53218 * 5 4 3 7 7 C 1.36238 * 119.79468 * 180.25774 * 5 4 3 8 8 C 1.39326 * 121.07385 * 0.27937 * 7 5 4 9 9 C 1.36137 * 120.85429 * 359.97438 * 8 7 5 10 10 C 1.40549 * 119.64603 * 0.02562 * 9 8 7 11 11 C 1.40499 * 121.21578 * 180.02562 * 10 9 8 12 12 C 1.39037 * 117.96078 * 179.97438 * 11 10 9 13 13 C 1.47763 * 120.27206 * 180.02562 * 12 11 10 14 14 O 1.21562 * 120.00547 * 173.69538 * 13 12 11 15 15 N 1.34781 * 119.99746 * 353.69586 * 13 12 11 16 16 C 1.46500 * 119.99969 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47062 * 180.02562 * 16 15 13 18 18 O 1.21289 * 120.00052 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00167 * 179.97438 * 17 16 15 20 20 C 1.37088 * 120.00234 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00051 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00288 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00309 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99557 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47039 * 90.00160 * 24 22 20 26 26 H 1.48502 * 109.46890 * 209.99771 * 24 22 20 27 27 H 1.48497 * 109.47211 * 329.99646 * 24 22 20 28 28 H 1.08996 * 109.46662 * 263.33332 * 1 2 3 29 29 H 1.09002 * 109.47051 * 23.33394 * 1 2 3 30 30 H 1.09000 * 109.47129 * 143.32945 * 1 2 3 31 31 H 1.07993 * 119.46362 * 180.29839 * 7 5 4 32 32 H 1.08007 * 119.57020 * 180.02562 * 8 7 5 33 33 H 1.08000 * 120.17551 * 180.02562 * 9 8 7 34 34 H 1.07995 * 121.02153 * 0.02562 * 11 10 9 35 35 H 0.97001 * 119.99777 * 359.97438 * 15 13 12 36 36 H 1.08995 * 109.46859 * 299.99935 * 16 15 13 37 37 H 1.09002 * 109.46964 * 59.99881 * 16 15 13 38 38 H 0.97005 * 119.99972 * 359.97438 * 19 17 16 39 39 H 0.97002 * 119.99800 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1459 1.1416 0.0000 4 6 3.4823 1.1997 0.0055 5 6 4.1501 2.4376 0.0000 6 17 3.2416 3.9170 0.0000 7 6 5.5120 2.4721 0.0005 8 6 6.2611 1.2973 0.0004 9 6 5.6511 0.0803 0.0005 10 6 4.2476 0.0061 0.0000 11 6 3.5839 -1.2322 0.0006 12 6 2.1935 -1.2266 0.0006 13 6 1.4435 -2.4998 0.0018 14 8 0.2334 -2.4924 0.1174 15 7 2.1011 -3.6694 -0.1254 16 6 1.3576 -4.9317 -0.1237 17 6 2.3196 -6.0815 -0.2782 18 8 3.5091 -5.8675 -0.3802 19 7 1.8581 -7.3475 -0.3030 20 6 2.7331 -8.3934 -0.4441 21 1 3.7923 -8.2028 -0.5349 22 6 2.2574 -9.6987 -0.4691 23 7 3.0962 -10.7013 -0.6039 24 14 0.4255 -10.0283 -0.3113 25 1 -0.1934 -10.0403 -1.6612 26 1 0.2139 -11.3450 0.3419 27 1 -0.2003 -8.9617 0.5108 28 1 -0.3632 -0.1193 1.0207 29 1 -0.3633 0.9436 -0.4071 30 1 -0.3633 -0.8243 -0.6137 31 1 6.0192 3.4255 0.0012 32 1 7.3398 1.3530 0.0012 33 1 6.2425 -0.8234 0.0009 34 1 4.1366 -2.1600 0.0018 35 1 3.0667 -3.6753 -0.2180 36 1 0.8178 -5.0341 0.8177 37 1 0.6486 -4.9369 -0.9515 38 1 0.9068 -7.5187 -0.2210 39 1 2.7640 -11.6125 -0.6217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544135792.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:35 Heat of formation + Delta-G solvation = -39.749720 kcal Electronic energy + Delta-G solvation = -26335.470910 eV Core-core repulsion = 22268.110334 eV Total energy + Delta-G solvation = -4067.360576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.27817 -40.95850 -40.04344 -38.35040 -37.41072 -36.34991 -35.61047 -34.47137 -33.82096 -32.99268 -31.42196 -29.55133 -28.69678 -26.57289 -25.51292 -23.76609 -23.21009 -22.06312 -21.47946 -20.65164 -19.68475 -18.83138 -18.17237 -17.51650 -17.16817 -16.93396 -16.66732 -16.53340 -16.12731 -15.94112 -15.63865 -15.36520 -15.25938 -14.84958 -14.76815 -14.31868 -14.24011 -14.11648 -13.95004 -13.60253 -13.25480 -13.09952 -13.04720 -12.95437 -12.73820 -12.43787 -12.30739 -12.00021 -11.89555 -11.57391 -11.41337 -11.13826 -10.67547 -10.59828 -10.35024 -10.27310 -9.86694 -9.26286 -8.44964 -6.06828 -1.00950 -0.56752 0.58230 1.08956 1.31819 1.34833 1.40284 1.44566 1.79162 1.83558 2.05557 2.21105 2.83482 2.84302 2.96803 3.11622 3.33457 3.45672 3.50031 3.66499 3.89463 4.04206 4.07026 4.22147 4.33425 4.42223 4.42348 4.49270 4.60354 4.74604 4.77607 4.91971 5.02423 5.08211 5.21366 5.26567 5.41943 5.48882 5.62749 5.88831 6.34108 6.48640 6.68903 6.78936 6.99335 7.29824 7.78032 8.71198 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022042 B = 0.002152 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.988747 B =13007.932912 C =14249.758005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.205 3.795 3 N -0.491 5.491 4 C 0.133 3.867 5 C -0.051 4.051 6 Cl -0.055 7.055 7 C -0.064 4.064 8 C -0.108 4.108 9 C -0.076 4.076 10 C -0.123 4.123 11 C 0.002 3.998 12 C -0.197 4.197 13 C 0.568 3.432 14 O -0.548 6.548 15 N -0.703 5.703 16 C 0.118 3.882 17 C 0.445 3.555 18 O -0.614 6.614 19 N -0.578 5.578 20 C -0.330 4.330 21 H 0.065 0.935 22 C -0.009 4.009 23 N -0.925 5.925 24 Si 0.957 3.043 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.231 1.231 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.168 0.832 32 H 0.178 0.822 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.412 0.588 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.392 0.608 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 25.928 1.858 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.052 3.948 3 N -0.201 5.201 4 C 0.011 3.989 5 C -0.079 4.079 6 Cl -0.026 7.026 7 C -0.084 4.084 8 C -0.126 4.126 9 C -0.095 4.095 10 C -0.125 4.125 11 C -0.024 4.024 12 C -0.203 4.203 13 C 0.355 3.645 14 O -0.428 6.428 15 N -0.357 5.357 16 C -0.010 4.010 17 C 0.232 3.768 18 O -0.500 6.500 19 N -0.217 5.217 20 C -0.459 4.459 21 H 0.083 0.917 22 C -0.209 4.209 23 N -0.565 5.565 24 Si 0.777 3.223 25 H -0.182 1.182 26 H -0.200 1.200 27 H -0.154 1.154 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.186 0.814 32 H 0.195 0.805 33 H 0.184 0.816 34 H 0.187 0.813 35 H 0.251 0.749 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.228 0.772 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.192 26.793 1.851 26.858 hybrid contribution 0.013 -1.473 -0.007 1.473 sum 0.204 25.320 1.844 25.388 Atomic orbital electron populations 1.21045 0.86650 1.04006 1.04371 1.21770 0.98281 0.86140 0.88653 1.67941 1.08408 1.28171 1.15537 1.18964 0.89748 0.92689 0.97519 1.20675 0.92928 0.85953 1.08316 1.98369 1.75589 1.31868 1.96758 1.21369 0.90445 1.01922 0.94687 1.21319 1.02512 0.90254 0.98471 1.21578 0.91277 1.00945 0.95694 1.18876 0.96232 0.92343 1.05089 1.22351 0.92834 0.98767 0.88474 1.20687 0.94712 0.94363 1.10507 1.17964 0.86908 0.83158 0.76443 1.90724 1.14012 1.87176 1.50860 1.45593 1.12261 1.04498 1.73387 1.20960 0.93196 0.81204 1.05595 1.20483 0.89426 0.84381 0.82481 1.90520 1.18517 1.84601 1.56338 1.41928 1.09179 1.05169 1.65460 1.19020 0.91563 0.85469 1.49811 0.91693 1.26064 1.04737 0.94226 0.95849 1.69778 1.37646 1.00130 1.48966 0.85465 0.76940 0.79721 0.80133 1.18164 1.20049 1.15409 0.89570 0.90466 0.88440 0.81445 0.80496 0.81575 0.81287 0.74889 0.87229 0.87140 0.77189 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.42 8.82 71.24 0.63 -1.80 16 2 C 0.20 5.29 6.82 43.28 0.30 5.58 16 3 N -0.49 -13.01 9.66 -175.78 -1.70 -14.71 16 4 C 0.13 3.13 6.61 40.31 0.27 3.39 16 5 C -0.05 -1.00 6.33 22.39 0.14 -0.86 16 6 Cl -0.05 -1.10 28.51 -2.72 -0.08 -1.18 16 7 C -0.06 -0.79 9.71 22.07 0.21 -0.58 16 8 C -0.11 -1.02 9.95 22.04 0.22 -0.80 16 9 C -0.08 -0.98 9.77 22.34 0.22 -0.77 16 10 C -0.12 -2.44 5.74 -21.29 -0.12 -2.56 16 11 C 0.00 0.04 9.38 23.01 0.22 0.26 16 12 C -0.20 -4.88 5.89 -20.00 -0.12 -5.00 16 13 C 0.57 15.50 7.69 86.76 0.67 16.16 16 14 O -0.55 -16.64 13.31 -3.91 -0.05 -16.69 16 15 N -0.70 -19.50 5.48 -469.78 -2.57 -22.08 16 16 C 0.12 3.47 6.15 85.63 0.53 3.99 16 17 C 0.44 18.06 7.85 87.66 0.69 18.74 16 18 O -0.61 -29.52 15.24 -3.06 -0.05 -29.56 16 19 N -0.58 -25.18 5.09 -306.99 -1.56 -26.74 16 20 C -0.33 -18.04 10.16 84.04 0.85 -17.18 16 21 H 0.06 4.21 7.39 -2.91 -0.02 4.19 16 22 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 23 N -0.93 -53.20 13.96 21.66 0.30 -52.90 16 24 Si 0.96 36.89 27.74 68.60 1.90 38.79 16 25 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 26 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 27 H -0.23 -7.48 6.52 99.48 0.65 -6.84 16 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.10 2.44 5.81 -2.39 -0.01 2.43 16 31 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 32 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 33 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.17 2.79 6.53 -2.91 -0.02 2.77 16 35 H 0.41 11.24 5.55 -92.71 -0.51 10.72 16 36 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.11 2.87 8.14 -2.39 -0.02 2.86 16 38 H 0.39 14.25 5.76 -92.70 -0.53 13.71 16 39 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -73.57 352.18 1.40 -72.17 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.04 Total: 34.30 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 5.16 Total: 18.60 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -5.53 Total: -116.43 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -0.10 Total: -46.25 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 1.90 Total: 38.79 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -73.57 1.40 -72.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544135792.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.419 kcal (2) G-P(sol) polarization free energy of solvation -73.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds