Wall clock time and date at job start Wed Apr 1 2020 04:45:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 N 1.30822 * 119.22987 * 2 1
4 4 C 1.33775 * 121.71920 * 179.72366 * 3 2 1
5 5 C 1.40645 * 120.83205 * 179.74640 * 4 3 2
6 6 Cl 1.73609 * 120.10296 * 0.53218 * 5 4 3
7 7 C 1.36238 * 119.79468 * 180.25774 * 5 4 3
8 8 C 1.39326 * 121.07385 * 0.27937 * 7 5 4
9 9 C 1.36137 * 120.85429 * 359.97438 * 8 7 5
10 10 C 1.40549 * 119.64603 * 0.02562 * 9 8 7
11 11 C 1.40499 * 121.21578 * 180.02562 * 10 9 8
12 12 C 1.39037 * 117.96078 * 179.97438 * 11 10 9
13 13 C 1.47763 * 120.27206 * 180.02562 * 12 11 10
14 14 O 1.21562 * 120.00547 * 173.69538 * 13 12 11
15 15 N 1.34781 * 119.99746 * 353.69586 * 13 12 11
16 16 C 1.46500 * 119.99969 * 179.97438 * 15 13 12
17 17 C 1.50701 * 109.47062 * 180.02562 * 16 15 13
18 18 O 1.21289 * 120.00052 * 359.97438 * 17 16 15
19 19 N 1.34775 * 120.00167 * 179.97438 * 17 16 15
20 20 C 1.37088 * 120.00234 * 179.97438 * 19 17 16
21 21 H 1.08004 * 120.00051 * 0.02562 * 20 19 17
22 22 C 1.38953 * 120.00288 * 179.97438 * 20 19 17
23 23 N 1.31410 * 120.00309 * 180.02562 * 22 20 19
24 24 Si 1.86803 * 119.99557 * 0.02562 * 22 20 19
25 25 H 1.48502 * 109.47039 * 90.00160 * 24 22 20
26 26 H 1.48502 * 109.46890 * 209.99771 * 24 22 20
27 27 H 1.48497 * 109.47211 * 329.99646 * 24 22 20
28 28 H 1.08996 * 109.46662 * 263.33332 * 1 2 3
29 29 H 1.09002 * 109.47051 * 23.33394 * 1 2 3
30 30 H 1.09000 * 109.47129 * 143.32945 * 1 2 3
31 31 H 1.07993 * 119.46362 * 180.29839 * 7 5 4
32 32 H 1.08007 * 119.57020 * 180.02562 * 8 7 5
33 33 H 1.08000 * 120.17551 * 180.02562 * 9 8 7
34 34 H 1.07995 * 121.02153 * 0.02562 * 11 10 9
35 35 H 0.97001 * 119.99777 * 359.97438 * 15 13 12
36 36 H 1.08995 * 109.46859 * 299.99935 * 16 15 13
37 37 H 1.09002 * 109.46964 * 59.99881 * 16 15 13
38 38 H 0.97005 * 119.99972 * 359.97438 * 19 17 16
39 39 H 0.97002 * 119.99800 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.1459 1.1416 0.0000
4 6 3.4823 1.1997 0.0055
5 6 4.1501 2.4376 0.0000
6 17 3.2416 3.9170 0.0000
7 6 5.5120 2.4721 0.0005
8 6 6.2611 1.2973 0.0004
9 6 5.6511 0.0803 0.0005
10 6 4.2476 0.0061 0.0000
11 6 3.5839 -1.2322 0.0006
12 6 2.1935 -1.2266 0.0006
13 6 1.4435 -2.4998 0.0018
14 8 0.2334 -2.4924 0.1174
15 7 2.1011 -3.6694 -0.1254
16 6 1.3576 -4.9317 -0.1237
17 6 2.3196 -6.0815 -0.2782
18 8 3.5091 -5.8675 -0.3802
19 7 1.8581 -7.3475 -0.3030
20 6 2.7331 -8.3934 -0.4441
21 1 3.7923 -8.2028 -0.5349
22 6 2.2574 -9.6987 -0.4691
23 7 3.0962 -10.7013 -0.6039
24 14 0.4255 -10.0283 -0.3113
25 1 -0.1934 -10.0403 -1.6612
26 1 0.2139 -11.3450 0.3419
27 1 -0.2003 -8.9617 0.5108
28 1 -0.3632 -0.1193 1.0207
29 1 -0.3633 0.9436 -0.4071
30 1 -0.3633 -0.8243 -0.6137
31 1 6.0192 3.4255 0.0012
32 1 7.3398 1.3530 0.0012
33 1 6.2425 -0.8234 0.0009
34 1 4.1366 -2.1600 0.0018
35 1 3.0667 -3.6753 -0.2180
36 1 0.8178 -5.0341 0.8177
37 1 0.6486 -4.9369 -0.9515
38 1 0.9068 -7.5187 -0.2210
39 1 2.7640 -11.6125 -0.6217
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001544135792.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:45:35
Heat of formation + Delta-G solvation = -39.749720 kcal
Electronic energy + Delta-G solvation = -26335.470910 eV
Core-core repulsion = 22268.110334 eV
Total energy + Delta-G solvation = -4067.360576 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.082 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.27817 -40.95850 -40.04344 -38.35040 -37.41072 -36.34991 -35.61047 -34.47137
-33.82096 -32.99268 -31.42196 -29.55133 -28.69678 -26.57289 -25.51292 -23.76609
-23.21009 -22.06312 -21.47946 -20.65164 -19.68475 -18.83138 -18.17237 -17.51650
-17.16817 -16.93396 -16.66732 -16.53340 -16.12731 -15.94112 -15.63865 -15.36520
-15.25938 -14.84958 -14.76815 -14.31868 -14.24011 -14.11648 -13.95004 -13.60253
-13.25480 -13.09952 -13.04720 -12.95437 -12.73820 -12.43787 -12.30739 -12.00021
-11.89555 -11.57391 -11.41337 -11.13826 -10.67547 -10.59828 -10.35024 -10.27310
-9.86694 -9.26286 -8.44964 -6.06828 -1.00950 -0.56752 0.58230 1.08956
1.31819 1.34833 1.40284 1.44566 1.79162 1.83558 2.05557 2.21105
2.83482 2.84302 2.96803 3.11622 3.33457 3.45672 3.50031 3.66499
3.89463 4.04206 4.07026 4.22147 4.33425 4.42223 4.42348 4.49270
4.60354 4.74604 4.77607 4.91971 5.02423 5.08211 5.21366 5.26567
5.41943 5.48882 5.62749 5.88831 6.34108 6.48640 6.68903 6.78936
6.99335 7.29824 7.78032 8.71198
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.022042 B = 0.002152 C = 0.001964
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1269.988747 B =13007.932912 C =14249.758005
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.104 4.104
2 C 0.205 3.795
3 N -0.491 5.491
4 C 0.133 3.867
5 C -0.051 4.051
6 Cl -0.055 7.055
7 C -0.064 4.064
8 C -0.108 4.108
9 C -0.076 4.076
10 C -0.123 4.123
11 C 0.002 3.998
12 C -0.197 4.197
13 C 0.568 3.432
14 O -0.548 6.548
15 N -0.703 5.703
16 C 0.118 3.882
17 C 0.445 3.555
18 O -0.614 6.614
19 N -0.578 5.578
20 C -0.330 4.330
21 H 0.065 0.935
22 C -0.009 4.009
23 N -0.925 5.925
24 Si 0.957 3.043
25 H -0.257 1.257
26 H -0.275 1.275
27 H -0.231 1.231
28 H 0.086 0.914
29 H 0.077 0.923
30 H 0.097 0.903
31 H 0.168 0.832
32 H 0.178 0.822
33 H 0.167 0.833
34 H 0.170 0.830
35 H 0.412 0.588
36 H 0.110 0.890
37 H 0.111 0.889
38 H 0.392 0.608
39 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.688 25.928 1.858 26.004
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.052 3.948
3 N -0.201 5.201
4 C 0.011 3.989
5 C -0.079 4.079
6 Cl -0.026 7.026
7 C -0.084 4.084
8 C -0.126 4.126
9 C -0.095 4.095
10 C -0.125 4.125
11 C -0.024 4.024
12 C -0.203 4.203
13 C 0.355 3.645
14 O -0.428 6.428
15 N -0.357 5.357
16 C -0.010 4.010
17 C 0.232 3.768
18 O -0.500 6.500
19 N -0.217 5.217
20 C -0.459 4.459
21 H 0.083 0.917
22 C -0.209 4.209
23 N -0.565 5.565
24 Si 0.777 3.223
25 H -0.182 1.182
26 H -0.200 1.200
27 H -0.154 1.154
28 H 0.104 0.896
29 H 0.095 0.905
30 H 0.116 0.884
31 H 0.186 0.814
32 H 0.195 0.805
33 H 0.184 0.816
34 H 0.187 0.813
35 H 0.251 0.749
36 H 0.128 0.872
37 H 0.129 0.871
38 H 0.228 0.772
39 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 0.192 26.793 1.851 26.858
hybrid contribution 0.013 -1.473 -0.007 1.473
sum 0.204 25.320 1.844 25.388
Atomic orbital electron populations
1.21045 0.86650 1.04006 1.04371 1.21770 0.98281 0.86140 0.88653
1.67941 1.08408 1.28171 1.15537 1.18964 0.89748 0.92689 0.97519
1.20675 0.92928 0.85953 1.08316 1.98369 1.75589 1.31868 1.96758
1.21369 0.90445 1.01922 0.94687 1.21319 1.02512 0.90254 0.98471
1.21578 0.91277 1.00945 0.95694 1.18876 0.96232 0.92343 1.05089
1.22351 0.92834 0.98767 0.88474 1.20687 0.94712 0.94363 1.10507
1.17964 0.86908 0.83158 0.76443 1.90724 1.14012 1.87176 1.50860
1.45593 1.12261 1.04498 1.73387 1.20960 0.93196 0.81204 1.05595
1.20483 0.89426 0.84381 0.82481 1.90520 1.18517 1.84601 1.56338
1.41928 1.09179 1.05169 1.65460 1.19020 0.91563 0.85469 1.49811
0.91693 1.26064 1.04737 0.94226 0.95849 1.69778 1.37646 1.00130
1.48966 0.85465 0.76940 0.79721 0.80133 1.18164 1.20049 1.15409
0.89570 0.90466 0.88440 0.81445 0.80496 0.81575 0.81287 0.74889
0.87229 0.87140 0.77189 0.90968
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -2.42 8.82 71.24 0.63 -1.80 16
2 C 0.20 5.29 6.82 43.28 0.30 5.58 16
3 N -0.49 -13.01 9.66 -175.78 -1.70 -14.71 16
4 C 0.13 3.13 6.61 40.31 0.27 3.39 16
5 C -0.05 -1.00 6.33 22.39 0.14 -0.86 16
6 Cl -0.05 -1.10 28.51 -2.72 -0.08 -1.18 16
7 C -0.06 -0.79 9.71 22.07 0.21 -0.58 16
8 C -0.11 -1.02 9.95 22.04 0.22 -0.80 16
9 C -0.08 -0.98 9.77 22.34 0.22 -0.77 16
10 C -0.12 -2.44 5.74 -21.29 -0.12 -2.56 16
11 C 0.00 0.04 9.38 23.01 0.22 0.26 16
12 C -0.20 -4.88 5.89 -20.00 -0.12 -5.00 16
13 C 0.57 15.50 7.69 86.76 0.67 16.16 16
14 O -0.55 -16.64 13.31 -3.91 -0.05 -16.69 16
15 N -0.70 -19.50 5.48 -469.78 -2.57 -22.08 16
16 C 0.12 3.47 6.15 85.63 0.53 3.99 16
17 C 0.44 18.06 7.85 87.66 0.69 18.74 16
18 O -0.61 -29.52 15.24 -3.06 -0.05 -29.56 16
19 N -0.58 -25.18 5.09 -306.99 -1.56 -26.74 16
20 C -0.33 -18.04 10.16 84.04 0.85 -17.18 16
21 H 0.06 4.21 7.39 -2.91 -0.02 4.19 16
22 C -0.01 -0.46 5.50 84.93 0.47 0.01 16
23 N -0.93 -53.20 13.96 21.66 0.30 -52.90 16
24 Si 0.96 36.89 27.74 68.60 1.90 38.79 16
25 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16
26 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16
27 H -0.23 -7.48 6.52 99.48 0.65 -6.84 16
28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16
29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
30 H 0.10 2.44 5.81 -2.39 -0.01 2.43 16
31 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16
32 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16
33 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16
34 H 0.17 2.79 6.53 -2.91 -0.02 2.77 16
35 H 0.41 11.24 5.55 -92.71 -0.51 10.72 16
36 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16
37 H 0.11 2.87 8.14 -2.39 -0.02 2.86 16
38 H 0.39 14.25 5.76 -92.70 -0.53 13.71 16
39 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16
Total: -1.00 -73.57 352.18 1.40 -72.17
By element:
Atomic # 1 Polarization: 34.26 SS G_CDS: 0.04 Total: 34.30 kcal
Atomic # 6 Polarization: 13.43 SS G_CDS: 5.16 Total: 18.60 kcal
Atomic # 7 Polarization: -110.90 SS G_CDS: -5.53 Total: -116.43 kcal
Atomic # 8 Polarization: -46.15 SS G_CDS: -0.10 Total: -46.25 kcal
Atomic # 14 Polarization: 36.89 SS G_CDS: 1.90 Total: 38.79 kcal
Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal
Total: -73.57 1.40 -72.17 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001544135792.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.419 kcal
(2) G-P(sol) polarization free energy of solvation -73.567 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.149 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.168 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.750 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds