Wall clock time and date at job start Wed Apr 1 2020 04:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40065 * 125.95377 * 2 1 4 4 C 1.31927 * 108.26144 * 180.02562 * 3 2 1 5 5 C 1.47595 * 125.96351 * 180.02562 * 4 3 2 6 6 O 1.21487 * 120.00408 * 180.02562 * 5 4 3 7 7 O 1.34729 * 119.99977 * 0.02562 * 5 4 3 8 8 C 1.41044 * 108.06856 * 359.77522 * 4 3 2 9 9 C 1.35763 * 107.78691 * 0.36845 * 8 4 3 10 10 N 1.39418 * 126.10166 * 179.90674 * 9 8 4 11 11 C 1.34774 * 120.00052 * 359.68092 * 10 9 8 12 12 O 1.21558 * 120.00039 * 0.02562 * 11 10 9 13 13 C 1.47821 * 119.99849 * 180.02562 * 11 10 9 14 14 C 1.39696 * 120.10382 * 0.02562 * 13 11 10 15 15 C 1.38033 * 120.03693 * 179.97438 * 14 13 11 16 16 C 1.38186 * 120.24738 * 359.78525 * 15 14 13 17 17 C 1.39188 * 120.20321 * 0.46768 * 16 15 14 18 18 S 1.76194 * 120.01963 * 179.78687 * 17 16 15 19 19 C 1.76196 * 100.00177 * 265.25514 * 18 17 16 20 20 H 1.07999 * 120.00447 * 5.11739 * 19 18 17 21 21 C 1.38736 * 119.99972 * 185.12238 * 19 18 17 22 22 N 1.31617 * 119.99948 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99718 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47127 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46609 * 120.00183 * 23 21 19 26 26 H 1.48498 * 109.47156 * 239.99996 * 23 21 19 27 27 C 1.38875 * 119.95888 * 359.51873 * 17 16 15 28 28 H 1.09000 * 109.47527 * 270.00465 * 1 2 3 29 29 H 1.09007 * 109.47299 * 30.00143 * 1 2 3 30 30 H 1.09000 * 109.46885 * 149.99961 * 1 2 3 31 31 H 0.96700 * 117.00085 * 180.02562 * 7 5 4 32 32 H 1.08005 * 126.10201 * 180.22893 * 8 4 3 33 33 H 0.97008 * 119.99661 * 179.68593 * 10 9 8 34 34 H 1.07992 * 119.98143 * 359.97438 * 14 13 11 35 35 H 1.07999 * 119.87731 * 180.02562 * 15 14 13 36 36 H 1.08001 * 119.90033 * 180.23792 * 16 15 14 37 37 H 0.97004 * 119.99849 * 179.97438 * 22 21 19 38 38 H 1.08000 * 120.11876 * 180.22958 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2873 1.1338 0.0000 4 6 3.5442 0.7329 -0.0006 5 6 4.7330 1.6076 -0.0002 6 8 5.8458 1.1202 -0.0013 7 8 4.5841 2.9466 0.0013 8 6 3.5534 -0.6775 0.0043 9 6 2.2635 -1.1007 -0.0005 10 7 1.8341 -2.4272 0.0001 11 6 2.7370 -3.4278 -0.0006 12 8 3.9257 -3.1737 -0.0012 13 6 2.2817 -4.8341 -0.0005 14 6 0.9161 -5.1285 -0.0002 15 6 0.4924 -6.4422 -0.0007 16 6 1.4149 -7.4710 -0.0058 17 6 2.7780 -7.1894 -0.0008 18 16 3.9500 -8.5050 -0.0017 19 6 4.2555 -8.6439 1.7280 20 1 3.6864 -8.0484 2.4265 21 6 5.2273 -9.5181 2.1927 22 7 5.9214 -10.2434 1.3415 23 14 5.5517 -9.6648 4.0266 24 1 4.6452 -8.7489 4.7644 25 1 5.3045 -11.0626 4.4626 26 1 6.9630 -9.3000 4.3103 27 6 3.2137 -5.8707 -0.0007 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 5.3919 3.4782 0.0010 32 1 4.4303 -1.3082 0.0086 33 1 0.8854 -2.6298 0.0010 34 1 0.1914 -4.3278 0.0003 35 1 -0.5639 -6.6668 -0.0009 36 1 1.0772 -8.4969 -0.0100 37 1 6.6012 -10.8544 1.6664 38 1 4.2707 -5.6492 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571131896.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:14 Heat of formation + Delta-G solvation = -6.349342 kcal Electronic energy + Delta-G solvation = -26074.915880 eV Core-core repulsion = 22011.047360 eV Total energy + Delta-G solvation = -4063.868521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.99331 -40.33217 -39.81632 -38.08012 -36.32328 -35.35893 -33.61770 -32.56226 -31.46597 -30.73251 -29.26388 -27.89895 -25.62989 -24.76896 -24.16948 -22.60521 -21.64870 -21.04631 -20.10751 -19.04693 -18.16051 -17.89312 -17.20357 -16.50840 -16.37803 -16.19979 -15.67911 -15.57420 -15.03413 -14.97669 -14.89772 -14.53423 -14.27325 -13.77718 -13.65986 -13.56605 -13.22748 -13.03769 -12.94688 -12.50845 -11.84270 -11.82592 -11.37905 -11.36474 -11.21467 -11.19927 -11.13941 -11.08639 -10.77704 -10.13485 -9.95458 -9.49524 -9.23295 -9.15920 -8.85619 -8.47402 -8.15090 -6.78963 -6.34190 -4.09160 0.72454 0.95853 1.48361 1.55565 1.78392 2.37699 2.78732 2.95329 2.97262 3.14717 3.17901 3.25736 3.38358 3.92158 3.92613 4.16674 4.35376 4.59907 4.65278 4.80776 4.89838 4.99653 5.03213 5.07214 5.13878 5.39875 5.49731 5.54403 5.55477 5.70178 5.78641 6.04890 6.12552 6.22786 6.35815 6.44940 6.48908 6.74489 6.84195 7.00715 7.15567 7.52422 7.65173 7.80787 8.27091 9.12039 10.72590 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.002468 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.927913 B =11343.218951 C =12724.111496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.375 5.375 3 N -0.226 5.226 4 C 0.053 3.947 5 C 0.571 3.429 6 O -0.491 6.491 7 O -0.503 6.503 8 C -0.221 4.221 9 C 0.312 3.688 10 N -0.649 5.649 11 C 0.572 3.428 12 O -0.491 6.491 13 C -0.154 4.154 14 C -0.090 4.090 15 C -0.138 4.138 16 C -0.049 4.049 17 C -0.105 4.105 18 S -0.031 6.031 19 C -0.521 4.521 20 H 0.077 0.923 21 C 0.074 3.926 22 N -0.869 5.869 23 Si 0.921 3.079 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.278 1.278 27 C -0.012 4.012 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.416 0.584 32 H 0.190 0.810 33 H 0.412 0.588 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.270 0.730 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.661 19.734 -3.524 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.166 5.166 3 N -0.056 5.056 4 C -0.111 4.111 5 C 0.411 3.589 6 O -0.375 6.375 7 O -0.314 6.314 8 C -0.252 4.252 9 C 0.094 3.906 10 N -0.298 5.298 11 C 0.362 3.638 12 O -0.364 6.364 13 C -0.159 4.159 14 C -0.109 4.109 15 C -0.158 4.158 16 C -0.070 4.070 17 C -0.215 4.215 18 S 0.204 5.796 19 C -0.669 4.669 20 H 0.095 0.905 21 C -0.135 4.135 22 N -0.504 5.504 23 Si 0.747 3.253 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.203 1.203 27 C -0.034 4.034 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.275 0.725 32 H 0.207 0.793 33 H 0.249 0.751 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.080 0.920 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.052 19.659 -4.420 24.565 hybrid contribution -0.078 0.247 2.138 2.154 sum -14.129 19.906 -2.282 24.517 Atomic orbital electron populations 1.21994 0.73457 1.05100 1.04102 1.48788 1.06711 1.01951 1.59196 1.77866 1.00469 1.04893 1.22358 1.20687 0.90693 0.92961 1.06790 1.19237 0.86684 0.80511 0.72457 1.90974 1.25503 1.76042 1.44942 1.84627 1.42840 1.18377 1.85535 1.21632 0.96764 0.92222 1.14602 1.17912 0.90143 0.80641 1.01919 1.42916 1.11439 1.01483 1.73981 1.18505 0.85239 0.84711 0.75353 1.90765 1.15998 1.83460 1.46127 1.19539 0.94548 0.90773 1.11010 1.21088 0.93587 0.96983 0.99262 1.21066 0.99699 0.92324 1.02710 1.22045 0.92315 0.99704 0.92950 1.22914 0.98662 0.98986 1.00977 1.83680 1.48427 1.34970 1.12571 1.22869 1.24920 1.29053 0.90035 0.90506 1.25010 0.94468 0.94743 0.99309 1.69986 1.22096 1.23915 1.34392 0.86060 0.78487 0.78141 0.82586 1.19485 1.20462 1.20346 1.22007 1.00083 0.90608 0.90680 0.89927 0.88176 0.89500 0.72490 0.79336 0.75080 0.86665 0.85567 0.84777 0.92008 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 11.28 59.84 0.68 1.11 16 2 N -0.37 -3.76 4.04 -67.10 -0.27 -4.03 16 3 N -0.23 -2.79 12.61 33.32 0.42 -2.37 16 4 C 0.05 0.72 7.11 -82.95 -0.59 0.13 16 5 C 0.57 7.22 8.34 34.55 0.29 7.50 16 6 O -0.49 -7.47 17.69 -19.26 -0.34 -7.81 16 7 O -0.50 -4.54 13.43 -40.57 -0.55 -5.09 16 8 C -0.22 -3.22 9.41 -39.40 -0.37 -3.59 16 9 C 0.31 3.76 7.66 -152.68 -1.17 2.59 16 10 N -0.65 -6.83 5.36 -12.25 -0.07 -6.89 16 11 C 0.57 8.24 7.74 -12.34 -0.10 8.15 16 12 O -0.49 -8.81 13.45 5.31 0.07 -8.74 16 13 C -0.15 -2.26 5.87 -105.00 -0.62 -2.88 16 14 C -0.09 -1.02 9.54 -39.11 -0.37 -1.40 16 15 C -0.14 -1.69 10.02 -39.68 -0.40 -2.09 16 16 C -0.05 -0.79 9.79 -39.25 -0.38 -1.18 16 17 C -0.10 -2.07 5.45 -38.99 -0.21 -2.29 16 18 S -0.03 -0.77 21.40 -107.50 -2.30 -3.07 16 19 C -0.52 -14.24 9.46 30.92 0.29 -13.95 16 20 H 0.08 2.08 7.79 -52.49 -0.41 1.67 16 21 C 0.07 2.03 5.49 -17.46 -0.10 1.93 16 22 N -0.87 -24.92 13.22 55.49 0.73 -24.19 16 23 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 C -0.01 -0.22 9.34 -38.91 -0.36 -0.59 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.18 7.50 -51.93 -0.39 -0.21 16 31 H 0.42 1.57 9.11 45.56 0.42 1.98 16 32 H 0.19 3.18 5.80 -52.48 -0.30 2.87 16 33 H 0.41 2.67 5.99 -40.82 -0.24 2.43 16 34 H 0.12 0.77 6.40 -52.49 -0.34 0.44 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.14 2.89 7.65 -52.49 -0.40 2.49 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -36.22 359.54 -7.81 -44.03 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -2.50 Total: 3.26 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -3.41 Total: -6.54 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.82 Total: -37.48 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.81 Total: -21.64 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -2.30 Total: -3.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.22 -7.81 -44.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571131896.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.684 kcal (2) G-P(sol) polarization free energy of solvation -36.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds