Wall clock time and date at job start Wed Apr 1 2020 04:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40065 * 125.95377 * 2 1 4 4 C 1.31927 * 108.26144 * 180.02562 * 3 2 1 5 5 C 1.47595 * 125.96351 * 180.02562 * 4 3 2 6 6 O 1.21487 * 120.00408 * 180.02562 * 5 4 3 7 7 O 1.34729 * 119.99977 * 0.02562 * 5 4 3 8 8 C 1.41044 * 108.06856 * 359.77522 * 4 3 2 9 9 C 1.35763 * 107.78691 * 0.36845 * 8 4 3 10 10 N 1.39418 * 126.10166 * 179.90674 * 9 8 4 11 11 C 1.34774 * 120.00052 * 359.68092 * 10 9 8 12 12 O 1.21558 * 120.00039 * 0.02562 * 11 10 9 13 13 C 1.47821 * 119.99849 * 180.02562 * 11 10 9 14 14 C 1.39696 * 120.10382 * 0.02562 * 13 11 10 15 15 C 1.38033 * 120.03693 * 179.97438 * 14 13 11 16 16 C 1.38186 * 120.24738 * 359.78525 * 15 14 13 17 17 C 1.39188 * 120.20321 * 0.46768 * 16 15 14 18 18 S 1.76194 * 120.01963 * 179.78687 * 17 16 15 19 19 C 1.76196 * 100.00177 * 265.25514 * 18 17 16 20 20 H 1.07999 * 120.00447 * 5.11739 * 19 18 17 21 21 C 1.38736 * 119.99972 * 185.12238 * 19 18 17 22 22 N 1.31617 * 119.99948 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99718 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47127 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46609 * 120.00183 * 23 21 19 26 26 H 1.48498 * 109.47156 * 239.99996 * 23 21 19 27 27 C 1.38875 * 119.95888 * 359.51873 * 17 16 15 28 28 H 1.09000 * 109.47527 * 270.00465 * 1 2 3 29 29 H 1.09007 * 109.47299 * 30.00143 * 1 2 3 30 30 H 1.09000 * 109.46885 * 149.99961 * 1 2 3 31 31 H 0.96700 * 117.00085 * 180.02562 * 7 5 4 32 32 H 1.08005 * 126.10201 * 180.22893 * 8 4 3 33 33 H 0.97008 * 119.99661 * 179.68593 * 10 9 8 34 34 H 1.07992 * 119.98143 * 359.97438 * 14 13 11 35 35 H 1.07999 * 119.87731 * 180.02562 * 15 14 13 36 36 H 1.08001 * 119.90033 * 180.23792 * 16 15 14 37 37 H 0.97004 * 119.99849 * 179.97438 * 22 21 19 38 38 H 1.08000 * 120.11876 * 180.22958 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2873 1.1338 0.0000 4 6 3.5442 0.7329 -0.0006 5 6 4.7330 1.6076 -0.0002 6 8 5.8458 1.1202 -0.0013 7 8 4.5841 2.9466 0.0013 8 6 3.5534 -0.6775 0.0043 9 6 2.2635 -1.1007 -0.0005 10 7 1.8341 -2.4272 0.0001 11 6 2.7370 -3.4278 -0.0006 12 8 3.9257 -3.1737 -0.0012 13 6 2.2817 -4.8341 -0.0005 14 6 0.9161 -5.1285 -0.0002 15 6 0.4924 -6.4422 -0.0007 16 6 1.4149 -7.4710 -0.0058 17 6 2.7780 -7.1894 -0.0008 18 16 3.9500 -8.5050 -0.0017 19 6 4.2555 -8.6439 1.7280 20 1 3.6864 -8.0484 2.4265 21 6 5.2273 -9.5181 2.1927 22 7 5.9214 -10.2434 1.3415 23 14 5.5517 -9.6648 4.0266 24 1 4.6452 -8.7489 4.7644 25 1 5.3045 -11.0626 4.4626 26 1 6.9630 -9.3000 4.3103 27 6 3.2137 -5.8707 -0.0007 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 5.3919 3.4782 0.0010 32 1 4.4303 -1.3082 0.0086 33 1 0.8854 -2.6298 0.0010 34 1 0.1914 -4.3278 0.0003 35 1 -0.5639 -6.6668 -0.0009 36 1 1.0772 -8.4969 -0.0100 37 1 6.6012 -10.8544 1.6664 38 1 4.2707 -5.6492 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571131896.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:13 Heat of formation + Delta-G solvation = -32.851897 kcal Electronic energy + Delta-G solvation = -26076.065117 eV Core-core repulsion = 22011.047360 eV Total energy + Delta-G solvation = -4065.017758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.94265 -41.39867 -40.81703 -39.27668 -37.21965 -36.42941 -34.65263 -34.37374 -32.63739 -31.94718 -30.27315 -28.58633 -27.74464 -25.80791 -25.13127 -23.80835 -22.69537 -21.97613 -21.21465 -20.10402 -19.71189 -18.97437 -18.45784 -17.41612 -17.39624 -17.14297 -16.93646 -16.78959 -16.64141 -16.20791 -15.93781 -15.75852 -15.48564 -14.97906 -14.63183 -14.61460 -14.51338 -13.92780 -13.69943 -13.44264 -13.27901 -13.10386 -12.98922 -12.74222 -12.69760 -12.41785 -12.39016 -12.24718 -12.09660 -11.74015 -11.31921 -11.21841 -10.77674 -10.30789 -10.04938 -9.73616 -9.47110 -8.80525 -8.39654 -6.19258 -0.37760 -0.07269 0.23318 0.70228 0.75361 1.30008 1.36524 1.46277 1.50485 1.64796 1.74037 1.95225 2.15689 2.23893 2.74736 2.94011 3.13747 3.34228 3.41555 3.89838 3.95351 4.07249 4.18664 4.19995 4.33942 4.39045 4.45018 4.58049 4.62109 4.65633 4.72896 4.90377 5.13063 5.22580 5.29860 5.35233 5.38920 5.49411 5.60080 5.81619 5.95188 6.15927 6.25385 6.76706 6.86419 7.01485 8.67555 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.002468 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.927913 B =11343.218951 C =12724.111496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.355 5.355 3 N -0.226 5.226 4 C 0.035 3.965 5 C 0.577 3.423 6 O -0.529 6.529 7 O -0.491 6.491 8 C -0.254 4.254 9 C 0.316 3.684 10 N -0.620 5.620 11 C 0.574 3.426 12 O -0.536 6.536 13 C -0.152 4.152 14 C -0.057 4.057 15 C -0.118 4.118 16 C -0.056 4.056 17 C -0.129 4.129 18 S -0.096 6.096 19 C -0.533 4.533 20 H 0.069 0.931 21 C 0.019 3.981 22 N -0.906 5.906 23 Si 0.991 3.009 24 H -0.265 1.265 25 H -0.266 1.266 26 H -0.275 1.275 27 C -0.039 4.039 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.439 0.561 32 H 0.157 0.843 33 H 0.435 0.565 34 H 0.182 0.818 35 H 0.181 0.819 36 H 0.136 0.864 37 H 0.273 0.727 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.729 21.877 -2.709 29.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.147 5.147 3 N -0.057 5.057 4 C -0.128 4.128 5 C 0.419 3.581 6 O -0.416 6.416 7 O -0.304 6.304 8 C -0.286 4.286 9 C 0.096 3.904 10 N -0.271 5.271 11 C 0.364 3.636 12 O -0.412 6.412 13 C -0.157 4.157 14 C -0.075 4.075 15 C -0.137 4.137 16 C -0.077 4.077 17 C -0.241 4.241 18 S 0.138 5.862 19 C -0.681 4.681 20 H 0.087 0.913 21 C -0.186 4.186 22 N -0.543 5.543 23 Si 0.813 3.187 24 H -0.189 1.189 25 H -0.191 1.191 26 H -0.200 1.200 27 C -0.061 4.061 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.301 0.699 32 H 0.175 0.825 33 H 0.278 0.722 34 H 0.199 0.801 35 H 0.198 0.802 36 H 0.154 0.846 37 H 0.083 0.917 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.198 21.856 -3.617 29.314 hybrid contribution 1.268 -0.219 1.804 2.216 sum -17.929 21.637 -1.813 28.158 Atomic orbital electron populations 1.22647 0.69738 1.07616 1.06309 1.49183 1.08339 1.00340 1.56804 1.77798 1.00052 1.05927 1.21928 1.20725 0.91448 0.92680 1.07945 1.19215 0.85992 0.81381 0.71553 1.90955 1.26773 1.76888 1.46964 1.84577 1.44434 1.16808 1.84607 1.21469 0.97396 0.92861 1.16898 1.17676 0.89820 0.81477 1.01402 1.42452 1.11999 1.00108 1.72587 1.18472 0.84997 0.85252 0.74897 1.90788 1.18263 1.84027 1.48073 1.19529 0.95652 0.89744 1.10808 1.21762 0.92572 0.98695 0.94515 1.21586 1.01324 0.91181 0.99598 1.22156 0.91110 1.01486 0.92968 1.22495 0.98892 0.97107 1.05561 1.83563 1.51724 1.38663 1.12206 1.23095 1.24952 1.28863 0.91151 0.91271 1.25992 0.94164 0.94288 1.04158 1.70110 1.22831 1.24791 1.36556 0.85018 0.78299 0.78667 0.76744 1.18860 1.19097 1.20019 1.21651 0.99392 0.91613 0.93427 0.87783 0.86828 0.86010 0.69851 0.82547 0.72228 0.80079 0.80196 0.84605 0.91742 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 11.28 127.77 1.44 1.71 16 2 N -0.35 -5.89 4.04 -366.20 -1.48 -7.37 16 3 N -0.23 -5.15 12.61 -48.50 -0.61 -5.76 16 4 C 0.04 0.95 7.11 42.29 0.30 1.25 16 5 C 0.58 14.88 8.34 70.29 0.59 15.46 16 6 O -0.53 -17.02 17.69 19.88 0.35 -16.67 16 7 O -0.49 -8.42 13.43 -56.40 -0.76 -9.18 16 8 C -0.25 -7.60 9.41 22.38 0.21 -7.39 16 9 C 0.32 6.96 7.66 131.03 1.00 7.97 16 10 N -0.62 -10.89 5.36 -310.93 -1.67 -12.55 16 11 C 0.57 15.95 7.74 86.78 0.67 16.62 16 12 O -0.54 -20.35 13.45 -3.90 -0.05 -20.40 16 13 C -0.15 -4.22 5.87 -20.11 -0.12 -4.34 16 14 C -0.06 -0.97 9.54 22.57 0.22 -0.75 16 15 C -0.12 -2.24 10.02 22.21 0.22 -2.01 16 16 C -0.06 -1.73 9.79 22.49 0.22 -1.51 16 17 C -0.13 -5.31 5.45 22.65 0.12 -5.18 16 18 S -0.10 -5.11 21.40 -56.49 -1.21 -6.32 16 19 C -0.53 -30.61 9.46 67.94 0.64 -29.97 16 20 H 0.07 3.91 7.79 -2.91 -0.02 3.89 16 21 C 0.02 1.09 5.49 84.84 0.47 1.56 16 22 N -0.91 -54.30 13.22 21.64 0.29 -54.01 16 23 Si 0.99 44.26 29.55 68.60 2.03 46.29 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 C -0.04 -1.52 9.34 22.70 0.21 -1.30 16 28 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 30 H 0.12 -0.37 7.50 -2.39 -0.02 -0.39 16 31 H 0.44 2.80 9.11 -74.06 -0.67 2.13 16 32 H 0.16 5.77 5.80 -2.91 -0.02 5.75 16 33 H 0.44 2.84 5.99 -92.70 -0.56 2.28 16 34 H 0.18 0.72 6.40 -2.91 -0.02 0.70 16 35 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.10 4.77 7.65 -2.91 -0.02 4.75 16 Total: -1.00 -90.03 359.54 3.02 -87.01 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -0.06 Total: 6.85 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 6.20 Total: -7.88 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -3.47 Total: -79.70 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -0.46 Total: -46.24 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -5.11 SS G_CDS: -1.21 Total: -6.32 kcal Total: -90.03 3.02 -87.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571131896.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.159 kcal (2) G-P(sol) polarization free energy of solvation -90.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds