Wall clock time and date at job start Wed Apr 1 2020 04:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34138 * 125.66413 * 2 1 4 4 C 1.38186 * 107.53274 * 180.02562 * 3 2 1 5 5 C 1.47083 * 126.46259 * 179.97438 * 4 3 2 6 6 O 1.21539 * 120.00211 * 180.02562 * 5 4 3 7 7 O 1.34787 * 119.99563 * 0.02562 * 5 4 3 8 8 C 1.41889 * 107.07656 * 359.97438 * 4 3 2 9 9 N 1.39675 * 126.08350 * 179.97438 * 8 4 3 10 10 C 1.34774 * 120.00088 * 180.02562 * 9 8 4 11 11 O 1.21563 * 119.99749 * 359.97438 * 10 9 8 12 12 C 1.47821 * 120.00012 * 179.97438 * 10 9 8 13 13 C 1.39691 * 120.10296 * 0.02562 * 12 10 9 14 14 C 1.38034 * 120.03627 * 179.97438 * 13 12 10 15 15 C 1.38186 * 120.24696 * 359.76539 * 14 13 12 16 16 C 1.39188 * 120.20306 * 0.51145 * 15 14 13 17 17 S 1.76194 * 120.01963 * 179.73866 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25184 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46950 * 90.00202 * 22 20 18 24 24 H 1.48495 * 109.46650 * 209.99961 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99842 * 22 20 18 26 26 C 1.38875 * 119.95888 * 359.47051 * 16 15 14 27 27 N 1.30930 * 107.82999 * 0.24650 * 8 4 3 28 28 H 1.09000 * 109.46902 * 90.00496 * 1 2 3 29 29 H 1.08997 * 109.47153 * 210.00886 * 1 2 3 30 30 H 1.09004 * 109.47000 * 330.00699 * 1 2 3 31 31 H 1.07994 * 126.23540 * 0.04615 * 3 2 1 32 32 H 0.96700 * 116.99556 * 179.97438 * 7 5 4 33 33 H 0.97004 * 119.99687 * 359.97438 * 9 8 4 34 34 H 1.07992 * 119.98026 * 359.97438 * 13 12 10 35 35 H 1.08003 * 119.87895 * 180.02562 * 14 13 12 36 36 H 1.07998 * 119.90138 * 180.27061 * 15 14 13 37 37 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 38 38 H 1.07996 * 120.11784 * 180.25400 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2471 1.0898 0.0000 4 6 3.5603 0.6598 -0.0006 5 6 4.7592 1.5119 -0.0013 6 8 5.8643 1.0061 -0.0023 7 8 4.6321 2.8538 -0.0010 8 6 3.5342 -0.7589 -0.0003 9 7 4.6477 -1.6022 -0.0013 10 6 4.4802 -2.9394 -0.0014 11 8 3.3601 -3.4117 -0.0003 12 6 5.6586 -3.8319 -0.0030 13 6 6.9468 -3.2915 -0.0037 14 6 8.0462 -4.1261 -0.0047 15 6 7.8788 -5.4978 0.0001 16 6 6.6000 -6.0472 -0.0050 17 16 6.3922 -7.7968 -0.0058 18 6 6.2202 -8.0837 -1.7358 19 1 6.3458 -7.2688 -2.4334 20 6 5.9237 -9.3563 -2.2018 21 7 5.7713 -10.3495 -1.3517 22 14 5.7421 -9.6605 -4.0360 23 1 7.0616 -10.0276 -4.6098 24 1 4.7789 -10.7681 -4.2609 25 1 5.2413 -8.4276 -4.6950 26 6 5.4879 -5.2154 -0.0036 27 7 2.2807 -1.1368 -0.0050 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5140 30 1 -0.3633 0.8901 0.5137 31 1 1.9116 2.1163 0.0007 32 1 5.4485 3.3720 -0.0011 33 1 5.5415 -1.2252 -0.0026 34 1 7.0825 -2.2201 -0.0036 35 1 9.0410 -3.7055 -0.0048 36 1 8.7429 -6.1456 0.0037 37 1 5.5635 -11.2392 -1.6775 38 1 4.4944 -5.6389 -0.0034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574212200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:16 Heat of formation + Delta-G solvation = -12.830352 kcal Electronic energy + Delta-G solvation = -26283.903536 eV Core-core repulsion = 22219.753977 eV Total energy + Delta-G solvation = -4064.149558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92537 -39.97243 -39.86596 -37.86751 -36.36388 -35.19720 -32.87238 -32.48755 -31.10572 -30.62631 -30.44307 -27.34863 -25.54942 -24.60324 -23.51641 -22.37778 -21.98683 -20.87937 -19.83835 -18.44606 -18.08165 -17.88844 -17.27985 -16.69310 -16.38054 -15.87943 -15.62333 -15.50688 -15.13332 -14.90883 -14.82955 -14.42052 -14.00729 -13.79791 -13.39830 -13.37292 -13.21018 -13.06916 -12.91986 -12.29719 -11.86073 -11.63067 -11.28008 -11.16933 -11.13110 -11.07349 -11.05014 -10.84055 -10.68763 -9.97239 -9.80662 -9.34738 -9.14714 -9.01149 -8.74825 -8.54787 -8.01153 -6.69364 -6.26641 -4.00452 0.93028 1.08290 1.67368 1.80999 1.86378 2.66062 2.75214 3.07128 3.16996 3.22887 3.27084 3.30571 3.48471 3.97020 4.10197 4.26422 4.27910 4.65251 4.74842 4.82218 4.93728 5.05783 5.09755 5.15961 5.21885 5.27286 5.44122 5.49635 5.74412 5.87608 5.96716 6.18136 6.26279 6.35841 6.43704 6.59284 6.65989 6.84978 6.97275 7.20299 7.57951 7.59878 7.64597 8.15296 8.34990 9.19325 10.80108 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.002520 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.768603 B =11106.445304 C =12148.350060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.351 5.351 3 C 0.147 3.853 4 C -0.310 4.310 5 C 0.566 3.434 6 O -0.530 6.530 7 O -0.516 6.516 8 C 0.364 3.636 9 N -0.634 5.634 10 C 0.558 3.442 11 O -0.483 6.483 12 C -0.154 4.154 13 C -0.087 4.087 14 C -0.139 4.139 15 C -0.051 4.051 16 C -0.108 4.108 17 S -0.033 6.033 18 C -0.519 4.519 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.015 4.015 27 N -0.277 5.277 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.414 0.586 33 H 0.429 0.571 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.270 0.730 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 28.228 3.608 28.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.128 5.128 3 C -0.008 4.008 4 C -0.326 4.326 5 C 0.412 3.588 6 O -0.420 6.420 7 O -0.328 6.328 8 C 0.104 3.896 9 N -0.288 5.288 10 C 0.346 3.654 11 O -0.354 6.354 12 C -0.159 4.159 13 C -0.106 4.106 14 C -0.159 4.159 15 C -0.072 4.072 16 C -0.218 4.218 17 S 0.201 5.799 18 C -0.667 4.667 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.506 5.506 22 Si 0.747 3.253 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.196 1.196 26 C -0.036 4.036 27 N -0.106 5.106 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.212 0.788 32 H 0.273 0.727 33 H 0.271 0.729 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.079 0.921 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.356 25.393 4.502 26.818 hybrid contribution 1.381 2.061 -2.157 3.287 sum -5.975 27.454 2.345 28.195 Atomic orbital electron populations 1.22089 0.72607 1.05379 1.04358 1.48390 1.07604 1.03655 1.53152 1.23184 0.89373 0.94315 0.93961 1.18887 0.91742 0.90661 1.31275 1.19518 0.87573 0.80239 0.71472 1.90836 1.27730 1.74943 1.48517 1.84529 1.42711 1.19208 1.86330 1.19083 0.88056 0.87194 0.95221 1.43206 1.07465 1.05333 1.72790 1.18711 0.89891 0.80917 0.75841 1.90867 1.24945 1.74475 1.45080 1.19653 0.91844 0.93964 1.10446 1.21229 0.91827 0.99226 0.98342 1.21071 0.98327 0.93658 1.02811 1.21998 0.97338 0.94539 0.93359 1.22844 0.93966 1.03449 1.01573 1.83605 1.94021 0.89810 1.12427 1.22847 1.55876 0.97740 0.90229 0.90585 1.25001 0.94305 0.95033 0.99225 1.69986 1.45227 1.00969 1.34399 0.86121 0.78222 0.78198 0.82799 1.20159 1.20665 1.19551 1.21945 1.00046 0.90519 0.91115 1.78166 0.98960 1.03789 1.29698 0.89767 0.88281 0.88713 0.78756 0.72708 0.72894 0.86136 0.85593 0.84910 0.92067 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.45 11.43 59.85 0.68 1.14 16 2 N -0.35 -3.36 3.97 -67.59 -0.27 -3.63 16 3 C 0.15 1.12 11.32 -16.56 -0.19 0.94 16 4 C -0.31 -3.42 6.14 -104.93 -0.64 -4.06 16 5 C 0.57 5.67 8.32 34.32 0.29 5.95 16 6 O -0.53 -6.57 15.99 -19.30 -0.31 -6.88 16 7 O -0.52 -3.12 13.26 -40.73 -0.54 -3.66 16 8 C 0.36 5.32 7.78 -154.53 -1.20 4.11 16 9 N -0.63 -9.66 5.36 -11.79 -0.06 -9.72 16 10 C 0.56 10.12 7.74 -12.34 -0.10 10.03 16 11 O -0.48 -10.30 15.06 5.31 0.08 -10.22 16 12 C -0.15 -2.78 5.87 -105.00 -0.62 -3.40 16 13 C -0.09 -1.32 9.54 -39.11 -0.37 -1.69 16 14 C -0.14 -2.10 10.02 -39.68 -0.40 -2.49 16 15 C -0.05 -0.94 9.79 -39.25 -0.38 -1.32 16 16 C -0.11 -2.35 5.45 -38.99 -0.21 -2.56 16 17 S -0.03 -0.87 21.40 -107.50 -2.30 -3.17 16 18 C -0.52 -14.85 9.46 30.92 0.29 -14.56 16 19 H 0.08 2.16 7.79 -52.49 -0.41 1.75 16 20 C 0.07 2.08 5.49 -17.46 -0.10 1.99 16 21 N -0.87 -25.71 13.22 55.49 0.73 -24.98 16 22 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.01 -0.31 9.34 -38.91 -0.36 -0.67 16 27 N -0.28 -4.19 10.72 31.60 0.34 -3.85 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.20 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.41 0.76 9.11 45.56 0.42 1.18 16 33 H 0.43 5.76 4.98 -40.82 -0.20 5.56 16 34 H 0.12 1.45 6.40 -52.49 -0.34 1.11 16 35 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 36 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.14 3.16 7.65 -52.49 -0.40 2.76 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -38.56 360.39 -7.84 -46.40 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -2.61 Total: 4.16 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -3.31 Total: -6.60 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.74 Total: -42.19 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.77 Total: -20.76 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -2.30 Total: -3.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.56 -7.84 -46.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574212200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.565 kcal (2) G-P(sol) polarization free energy of solvation -38.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds