Wall clock time and date at job start Wed Apr 1 2020 04:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34138 * 125.66413 * 2 1 4 4 C 1.38186 * 107.53274 * 180.02562 * 3 2 1 5 5 C 1.47083 * 126.46259 * 179.97438 * 4 3 2 6 6 O 1.21539 * 120.00211 * 180.02562 * 5 4 3 7 7 O 1.34787 * 119.99563 * 0.02562 * 5 4 3 8 8 C 1.41889 * 107.07656 * 359.97438 * 4 3 2 9 9 N 1.39675 * 126.08350 * 179.97438 * 8 4 3 10 10 C 1.34774 * 120.00088 * 180.02562 * 9 8 4 11 11 O 1.21563 * 119.99749 * 359.97438 * 10 9 8 12 12 C 1.47821 * 120.00012 * 179.97438 * 10 9 8 13 13 C 1.39691 * 120.10296 * 0.02562 * 12 10 9 14 14 C 1.38034 * 120.03627 * 179.97438 * 13 12 10 15 15 C 1.38186 * 120.24696 * 359.76539 * 14 13 12 16 16 C 1.39188 * 120.20306 * 0.51145 * 15 14 13 17 17 S 1.76194 * 120.01963 * 179.73866 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25184 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46950 * 90.00202 * 22 20 18 24 24 H 1.48495 * 109.46650 * 209.99961 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99842 * 22 20 18 26 26 C 1.38875 * 119.95888 * 359.47051 * 16 15 14 27 27 N 1.30930 * 107.82999 * 0.24650 * 8 4 3 28 28 H 1.09000 * 109.46902 * 90.00496 * 1 2 3 29 29 H 1.08997 * 109.47153 * 210.00886 * 1 2 3 30 30 H 1.09004 * 109.47000 * 330.00699 * 1 2 3 31 31 H 1.07994 * 126.23540 * 0.04615 * 3 2 1 32 32 H 0.96700 * 116.99556 * 179.97438 * 7 5 4 33 33 H 0.97004 * 119.99687 * 359.97438 * 9 8 4 34 34 H 1.07992 * 119.98026 * 359.97438 * 13 12 10 35 35 H 1.08003 * 119.87895 * 180.02562 * 14 13 12 36 36 H 1.07998 * 119.90138 * 180.27061 * 15 14 13 37 37 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 38 38 H 1.07996 * 120.11784 * 180.25400 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2471 1.0898 0.0000 4 6 3.5603 0.6598 -0.0006 5 6 4.7592 1.5119 -0.0013 6 8 5.8643 1.0061 -0.0023 7 8 4.6321 2.8538 -0.0010 8 6 3.5342 -0.7589 -0.0003 9 7 4.6477 -1.6022 -0.0013 10 6 4.4802 -2.9394 -0.0014 11 8 3.3601 -3.4117 -0.0003 12 6 5.6586 -3.8319 -0.0030 13 6 6.9468 -3.2915 -0.0037 14 6 8.0462 -4.1261 -0.0047 15 6 7.8788 -5.4978 0.0001 16 6 6.6000 -6.0472 -0.0050 17 16 6.3922 -7.7968 -0.0058 18 6 6.2202 -8.0837 -1.7358 19 1 6.3458 -7.2688 -2.4334 20 6 5.9237 -9.3563 -2.2018 21 7 5.7713 -10.3495 -1.3517 22 14 5.7421 -9.6605 -4.0360 23 1 7.0616 -10.0276 -4.6098 24 1 4.7789 -10.7681 -4.2609 25 1 5.2413 -8.4276 -4.6950 26 6 5.4879 -5.2154 -0.0036 27 7 2.2807 -1.1368 -0.0050 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5140 30 1 -0.3633 0.8901 0.5137 31 1 1.9116 2.1163 0.0007 32 1 5.4485 3.3720 -0.0011 33 1 5.5415 -1.2252 -0.0026 34 1 7.0825 -2.2201 -0.0036 35 1 9.0410 -3.7055 -0.0048 36 1 8.7429 -6.1456 0.0037 37 1 5.5635 -11.2392 -1.6775 38 1 4.4944 -5.6389 -0.0034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574212200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:15 Heat of formation + Delta-G solvation = -40.783232 kcal Electronic energy + Delta-G solvation = -26285.115664 eV Core-core repulsion = 22219.753977 eV Total energy + Delta-G solvation = -4065.361686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.77876 -41.24282 -40.59229 -39.27975 -37.04792 -36.29669 -34.66658 -33.76551 -32.23722 -31.94950 -31.59845 -28.01718 -27.75335 -25.75490 -24.42098 -23.75262 -23.00018 -21.83784 -21.01388 -19.99316 -19.19401 -18.77196 -18.52372 -17.66110 -17.18502 -17.13932 -16.94612 -16.74836 -16.39495 -16.30384 -15.98525 -15.81174 -15.43182 -14.88931 -14.66329 -14.64881 -14.05446 -13.99675 -13.72815 -13.49199 -13.29008 -13.12855 -12.97488 -12.73290 -12.47375 -12.44767 -12.10443 -12.05168 -11.78262 -11.70319 -11.26999 -11.17756 -10.80541 -10.24611 -10.04700 -9.77380 -9.58863 -8.82071 -8.40610 -6.20595 -0.35265 0.18559 0.32407 0.84051 1.06342 1.28357 1.36408 1.44574 1.61460 1.70750 1.82654 2.17399 2.23423 2.34322 2.72750 2.92543 3.20961 3.39686 3.46052 3.84547 3.87912 3.94007 4.13467 4.29365 4.38291 4.40188 4.43674 4.49162 4.59034 4.72259 4.74732 4.85927 5.11855 5.26269 5.35577 5.37470 5.43509 5.64303 5.77096 5.82706 5.91314 6.14779 6.53687 6.88609 6.99943 7.09486 8.66647 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.002520 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.768603 B =11106.445304 C =12148.350060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.350 5.350 3 C 0.179 3.821 4 C -0.331 4.331 5 C 0.573 3.427 6 O -0.561 6.561 7 O -0.499 6.499 8 C 0.333 3.667 9 N -0.622 5.622 10 C 0.558 3.442 11 O -0.528 6.528 12 C -0.157 4.157 13 C -0.065 4.065 14 C -0.117 4.117 15 C -0.054 4.054 16 C -0.128 4.128 17 S -0.088 6.088 18 C -0.537 4.537 19 H 0.067 0.933 20 C 0.020 3.980 21 N -0.906 5.906 22 Si 0.992 3.008 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.037 4.037 27 N -0.335 5.335 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.142 0.858 31 H 0.252 0.748 32 H 0.435 0.565 33 H 0.436 0.564 34 H 0.163 0.837 35 H 0.179 0.821 36 H 0.142 0.858 37 H 0.274 0.726 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 32.799 2.712 33.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.127 5.127 3 C 0.024 3.976 4 C -0.346 4.346 5 C 0.420 3.580 6 O -0.454 6.454 7 O -0.312 6.312 8 C 0.075 3.925 9 N -0.276 5.276 10 C 0.346 3.654 11 O -0.401 6.401 12 C -0.162 4.162 13 C -0.083 4.083 14 C -0.136 4.136 15 C -0.075 4.075 16 C -0.239 4.239 17 S 0.147 5.853 18 C -0.685 4.685 19 H 0.085 0.915 20 C -0.185 4.185 21 N -0.542 5.542 22 Si 0.814 3.186 23 H -0.185 1.185 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.059 4.059 27 N -0.164 5.164 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.160 0.840 31 H 0.268 0.732 32 H 0.297 0.703 33 H 0.280 0.720 34 H 0.180 0.820 35 H 0.196 0.804 36 H 0.160 0.840 37 H 0.084 0.916 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.715 30.031 3.619 30.984 hybrid contribution 1.101 0.937 -1.802 2.310 sum -5.614 30.968 1.817 31.525 Atomic orbital electron populations 1.22524 0.70067 1.06985 1.05709 1.48720 1.08870 1.02829 1.52276 1.23990 0.87697 0.95740 0.90215 1.19096 0.93768 0.89172 1.32572 1.19345 0.86661 0.81238 0.70771 1.90810 1.28676 1.75778 1.50132 1.84465 1.44083 1.17245 1.85427 1.19392 0.87735 0.88724 0.96700 1.42929 1.08457 1.04304 1.71912 1.18724 0.89188 0.81993 0.75449 1.90838 1.26436 1.75471 1.47399 1.19696 0.93559 0.92577 1.10354 1.21688 0.90154 1.01371 0.95122 1.21549 1.00618 0.91737 0.99688 1.22141 0.95804 0.96542 0.93027 1.22515 0.95930 1.00155 1.05279 1.83476 1.94462 0.95212 1.12172 1.23072 1.56240 0.97970 0.91168 0.91487 1.26000 0.93619 0.94567 1.04310 1.70103 1.45951 1.01489 1.36650 0.85050 0.78914 0.78101 0.76575 1.18545 1.19634 1.19506 1.21616 0.98450 0.92227 0.93624 1.78004 1.00126 1.07625 1.30686 0.88539 0.89798 0.83983 0.73189 0.70313 0.71976 0.82008 0.80387 0.83999 0.91647 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 11.43 127.77 1.46 2.07 16 2 N -0.35 -6.04 3.97 -367.75 -1.46 -7.50 16 3 C 0.18 2.09 11.32 84.33 0.95 3.05 16 4 C -0.33 -6.58 6.14 -20.07 -0.12 -6.70 16 5 C 0.57 9.88 8.32 70.14 0.58 10.46 16 6 O -0.56 -12.67 15.99 19.71 0.32 -12.35 16 7 O -0.50 -3.98 13.26 -56.98 -0.76 -4.74 16 8 C 0.33 9.67 7.78 133.95 1.04 10.71 16 9 N -0.62 -18.95 5.36 -309.49 -1.66 -20.61 16 10 C 0.56 21.02 7.74 86.78 0.67 21.69 16 11 O -0.53 -24.12 15.06 -3.91 -0.06 -24.18 16 12 C -0.16 -5.76 5.87 -20.11 -0.12 -5.88 16 13 C -0.06 -1.79 9.54 22.57 0.22 -1.58 16 14 C -0.12 -3.13 10.02 22.21 0.22 -2.91 16 15 C -0.05 -1.96 9.79 22.49 0.22 -1.74 16 16 C -0.13 -5.83 5.45 22.65 0.12 -5.71 16 17 S -0.09 -4.90 21.40 -56.49 -1.21 -6.11 16 18 C -0.54 -32.16 9.46 67.94 0.64 -31.52 16 19 H 0.07 3.98 7.79 -2.91 -0.02 3.96 16 20 C 0.02 1.19 5.49 84.84 0.47 1.65 16 21 N -0.91 -55.39 13.22 21.64 0.29 -55.10 16 22 Si 0.99 45.55 29.55 68.60 2.03 47.57 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 26 C -0.04 -1.67 9.34 22.70 0.21 -1.46 16 27 N -0.33 -10.29 10.72 -53.92 -0.58 -10.87 16 28 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.14 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.25 -0.16 8.06 -2.91 -0.02 -0.18 16 32 H 0.43 -0.16 9.11 -74.06 -0.67 -0.84 16 33 H 0.44 11.18 4.98 -92.71 -0.46 10.72 16 34 H 0.16 3.20 6.40 -2.91 -0.02 3.18 16 35 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 37 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 38 H 0.11 5.39 7.65 -2.91 -0.02 5.37 16 Total: -1.00 -92.88 360.39 3.50 -89.38 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.02 Total: 12.37 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 6.57 Total: -7.86 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -3.41 Total: -94.08 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.50 Total: -41.27 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: -4.90 SS G_CDS: -1.21 Total: -6.11 kcal Total: -92.88 3.50 -89.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574212200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.593 kcal (2) G-P(sol) polarization free energy of solvation -92.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds