Wall clock time and date at job start Wed Apr 1 2020 04:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42100 * 110.54119 * 2 1 4 4 O 1.42098 * 110.54561 * 223.24859 * 2 1 3 5 5 C 1.76206 * 104.45103 * 111.62220 * 2 1 3 6 6 C 1.38371 * 119.44666 * 89.99855 * 5 2 1 7 7 C 1.38329 * 119.30822 * 180.02562 * 6 5 2 8 8 C 1.40105 * 118.28321 * 0.02562 * 7 6 5 9 9 C 1.47690 * 120.56944 * 180.02562 * 8 7 6 10 10 O 1.21577 * 119.99542 * 36.74389 * 9 8 7 11 11 N 1.34772 * 119.99970 * 216.74820 * 9 8 7 12 12 C 1.37006 * 119.99757 * 185.65114 * 11 9 8 13 13 H 1.08004 * 119.99756 * 217.75899 * 12 11 9 14 14 C 1.38977 * 120.00254 * 37.75961 * 12 11 9 15 15 N 1.31370 * 119.99479 * 21.55735 * 14 12 11 16 16 Si 1.86797 * 120.00166 * 201.55987 * 14 12 11 17 17 H 1.48497 * 109.47379 * 90.00173 * 16 14 12 18 18 H 1.48500 * 109.46796 * 210.00168 * 16 14 12 19 19 H 1.48500 * 109.47213 * 329.99605 * 16 14 12 20 20 C 1.39349 * 120.00134 * 5.65196 * 11 9 8 21 21 C 1.39081 * 119.69878 * 43.60764 * 20 11 9 22 22 C 1.38380 * 119.09670 * 179.70141 * 21 20 11 23 23 C 1.38829 * 118.49135 * 0.52098 * 22 21 20 24 24 C 1.38153 * 119.31461 * 359.49973 * 23 22 21 25 25 N 1.31879 * 120.85353 * 0.23480 * 24 23 22 26 26 C 1.39607 * 118.86576 * 0.27265 * 8 7 6 27 27 N 1.31682 * 120.55293 * 359.45495 * 26 8 7 28 28 H 1.08997 * 109.47161 * 308.37488 * 1 2 3 29 29 H 1.09002 * 109.47118 * 68.38175 * 1 2 3 30 30 H 1.09000 * 109.47024 * 188.37197 * 1 2 3 31 31 H 1.07997 * 120.34730 * 0.02562 * 6 5 2 32 32 H 1.08004 * 120.86043 * 179.97438 * 7 6 5 33 33 H 0.97005 * 119.99539 * 184.96651 * 15 14 12 34 34 H 1.08001 * 120.45194 * 359.96252 * 21 20 11 35 35 H 1.08002 * 120.75552 * 180.27296 * 22 21 20 36 36 H 1.08001 * 120.34368 * 179.77970 * 23 22 21 37 37 H 1.07995 * 119.57369 * 180.25352 * 24 23 22 38 38 H 1.08005 * 119.72701 * 179.70609 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.4234 -1.9917 1.7546 7 6 2.7681 -2.4822 3.0012 8 6 2.9320 -1.5696 4.0516 9 6 3.3002 -2.0381 5.4030 10 8 4.0713 -2.9688 5.5346 11 7 2.7813 -1.4339 6.4903 12 6 3.2098 -1.7902 7.7419 13 1 2.5068 -1.8363 8.5605 14 6 4.5490 -2.0924 7.9581 15 7 5.4648 -1.6487 7.1272 16 14 5.0468 -3.1293 9.4299 17 1 5.0414 -4.5645 9.0489 18 1 6.4099 -2.7395 9.8717 19 1 4.0848 -2.9080 10.5394 20 6 1.8090 -0.4469 6.3414 21 6 0.7688 -0.6350 5.4376 22 6 -0.1934 0.3506 5.3043 23 6 -0.0756 1.4995 6.0746 24 6 0.9845 1.6198 6.9523 25 7 1.8837 0.6613 7.0621 26 6 2.7362 -0.2104 3.8003 27 7 2.4137 0.2076 2.5940 28 1 -0.3633 0.6380 0.8056 29 1 -0.3633 0.3786 -0.9554 30 1 -0.3633 -1.0167 0.1496 31 1 2.2882 -2.6654 0.9215 32 1 2.9065 -3.5414 3.1609 33 1 6.3902 -1.9185 7.2363 34 1 0.7105 -1.5398 4.8508 35 1 -1.0151 0.2305 4.6138 36 1 -0.8077 2.2892 5.9920 37 1 1.0779 2.5100 7.5566 38 1 2.8543 0.5047 4.6010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586333795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:39 Heat of formation + Delta-G solvation = -17.549671 kcal Electronic energy + Delta-G solvation = -28478.496782 eV Core-core repulsion = 24414.142578 eV Total energy + Delta-G solvation = -4064.354203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.33913 -40.74997 -39.75899 -38.15070 -36.99529 -36.46643 -34.55294 -33.66802 -33.43589 -32.52453 -30.78730 -30.25902 -27.73131 -25.80779 -24.97906 -24.30075 -23.98944 -21.90657 -20.35923 -19.51694 -19.32137 -18.85820 -17.92103 -17.50217 -17.25327 -17.04654 -16.60668 -16.50994 -16.21072 -16.02319 -15.80302 -15.35426 -15.14508 -14.97268 -14.48312 -14.37379 -14.01379 -13.91294 -13.87552 -13.84463 -13.56134 -13.14948 -13.04142 -13.03597 -12.90674 -12.75832 -12.47429 -12.18257 -11.89404 -11.43324 -11.22194 -11.11491 -10.94014 -10.66009 -10.48267 -10.26278 -10.14103 -9.11954 -8.45838 -6.21824 -0.99074 -0.75559 -0.07162 0.21129 0.53554 1.32968 1.39696 1.47528 1.71410 1.81105 2.15803 2.42574 2.55377 2.83216 2.91876 3.00891 3.16891 3.38587 3.50764 3.66234 3.82608 3.85677 3.93928 4.09536 4.18229 4.25452 4.30568 4.34345 4.35452 4.52073 4.69559 4.85636 4.89879 5.02494 5.19531 5.22247 5.26951 5.33391 5.77305 5.97157 6.36124 6.51133 6.73560 7.08970 7.47983 7.77532 8.61548 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.004094 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.894085 B = 6837.827979 C = 8149.716416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.610 4.610 2 S 2.512 3.488 3 O -0.964 6.964 4 O -0.957 6.957 5 C -0.436 4.436 6 C -0.078 4.078 7 C -0.057 4.057 8 C -0.118 4.118 9 C 0.508 3.492 10 O -0.545 6.545 11 N -0.393 5.393 12 C -0.350 4.350 13 H 0.087 0.913 14 C 0.023 3.977 15 N -0.861 5.861 16 Si 0.984 3.016 17 H -0.278 1.278 18 H -0.278 1.278 19 H -0.253 1.253 20 C 0.325 3.675 21 C -0.210 4.210 22 C -0.046 4.046 23 C -0.190 4.190 24 C 0.107 3.893 25 N -0.534 5.534 26 C 0.114 3.886 27 N -0.402 5.402 28 H 0.152 0.848 29 H 0.167 0.833 30 H 0.164 0.836 31 H 0.198 0.802 32 H 0.160 0.840 33 H 0.268 0.732 34 H 0.125 0.875 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.177 0.823 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.937 3.629 -12.801 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.765 4.765 2 S 2.690 3.310 3 O -0.961 6.961 4 O -0.953 6.953 5 C -0.652 4.652 6 C -0.098 4.098 7 C -0.084 4.084 8 C -0.123 4.123 9 C 0.298 3.702 10 O -0.423 6.423 11 N -0.106 5.106 12 C -0.476 4.476 13 H 0.105 0.895 14 C -0.185 4.185 15 N -0.495 5.495 16 Si 0.807 3.193 17 H -0.204 1.204 18 H -0.204 1.204 19 H -0.177 1.177 20 C 0.098 3.902 21 C -0.234 4.234 22 C -0.072 4.072 23 C -0.211 4.211 24 C -0.051 4.051 25 N -0.248 5.248 26 C -0.048 4.048 27 N -0.111 5.111 28 H 0.171 0.829 29 H 0.185 0.815 30 H 0.182 0.818 31 H 0.215 0.785 32 H 0.177 0.823 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.192 0.808 36 H 0.194 0.806 37 H 0.194 0.806 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.052 4.359 -12.880 21.037 hybrid contribution 0.458 -1.707 1.625 2.401 sum -15.594 2.652 -11.255 19.413 Atomic orbital electron populations 1.29952 1.16820 1.15047 1.14708 1.05392 0.81182 0.73093 0.71357 1.93548 1.80025 1.37509 1.84997 1.93571 1.80365 1.62370 1.59038 1.33985 1.11528 0.99645 1.20078 1.22275 0.94047 0.95349 0.98175 1.21952 0.94154 1.01023 0.91309 1.21451 0.98924 0.96448 0.95511 1.18195 0.84284 0.83852 0.83882 1.90597 1.35853 1.29724 1.86124 1.41169 1.34576 1.28411 1.06481 1.19367 0.93100 1.48903 0.86221 0.89535 1.26162 0.94971 0.96651 1.00729 1.69992 1.02043 1.37522 1.39956 0.85097 0.77907 0.78304 0.78028 1.20383 1.20372 1.17659 1.19128 0.90430 0.87574 0.93054 1.21891 0.95903 1.02881 1.02704 1.21768 0.96765 0.91539 0.97116 1.22401 1.00709 1.00043 0.97930 1.23182 0.89535 0.96137 0.96272 1.67331 1.29635 1.01136 1.26740 1.22893 0.94690 0.92754 0.94432 1.67751 1.08096 1.36966 0.98293 0.82932 0.81520 0.81768 0.78473 0.82267 0.92245 0.85739 0.80777 0.80605 0.80637 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.61 -3.05 10.80 113.37 1.22 -1.82 16 2 S 2.51 47.40 5.86 -56.49 -0.33 47.07 16 3 O -0.96 -27.35 17.73 -127.65 -2.26 -29.61 16 4 O -0.96 -21.82 17.09 -127.65 -2.18 -24.00 16 5 C -0.44 -11.50 6.53 84.71 0.55 -10.95 16 6 C -0.08 -1.93 9.49 22.32 0.21 -1.72 16 7 C -0.06 -1.86 9.77 22.74 0.22 -1.63 16 8 C -0.12 -4.89 3.83 -20.00 -0.08 -4.96 16 9 C 0.51 26.56 6.32 86.74 0.55 27.11 16 10 O -0.54 -32.34 14.49 -3.96 -0.06 -32.39 16 11 N -0.39 -20.70 2.74 -467.57 -1.28 -21.98 16 12 C -0.35 -19.96 8.99 84.06 0.76 -19.21 16 13 H 0.09 4.85 7.92 -2.91 -0.02 4.83 16 14 C 0.02 1.31 4.28 84.94 0.36 1.67 16 15 N -0.86 -52.93 11.56 21.67 0.25 -52.68 16 16 Si 0.98 45.49 29.61 68.60 2.03 47.52 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 19 H -0.25 -10.84 7.11 99.48 0.71 -10.14 16 20 C 0.33 14.28 4.37 132.93 0.58 14.86 16 21 C -0.21 -7.09 6.57 22.51 0.15 -6.94 16 22 C -0.05 -1.10 10.17 22.45 0.23 -0.87 16 23 C -0.19 -4.30 10.11 22.39 0.23 -4.07 16 24 C 0.11 3.26 11.18 84.67 0.95 4.20 16 25 N -0.53 -22.91 10.03 -193.00 -1.93 -24.85 16 26 C 0.11 4.51 7.94 85.05 0.68 5.18 16 27 N -0.40 -13.46 10.02 -192.14 -1.93 -15.38 16 28 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.17 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.16 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.20 3.12 7.55 -2.91 -0.02 3.10 16 32 H 0.16 4.79 8.06 -2.91 -0.02 4.77 16 33 H 0.27 15.77 8.32 -92.70 -0.77 15.00 16 34 H 0.12 4.06 6.72 -2.91 -0.02 4.04 16 35 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.18 4.17 8.06 -2.91 -0.02 4.15 16 38 H 0.14 6.08 6.25 -2.91 -0.02 6.06 16 Total: -1.00 -92.48 344.18 0.03 -92.45 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.11 Total: 13.00 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 6.61 Total: 0.85 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -4.89 Total: -114.89 kcal Atomic # 8 Polarization: -81.50 SS G_CDS: -4.50 Total: -86.00 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 47.40 SS G_CDS: -0.33 Total: 47.07 kcal Total: -92.48 0.03 -92.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586333795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.903 kcal (2) G-P(sol) polarization free energy of solvation -92.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds