Wall clock time and date at job start Wed Apr 1 2020 04:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 9 9 S 1.81399 * 109.46917 * 179.97438 * 8 7 6 10 10 S 2.05011 * 102.99896 * 69.99736 * 9 8 7 11 11 C 1.81405 * 104.44594 * 74.99939 * 10 9 8 12 12 O 1.42103 * 104.27372 * 191.07133 * 10 9 8 13 13 O 1.42100 * 104.27420 * 318.92790 * 10 9 8 14 14 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 15 15 N 1.30448 * 108.02337 * 359.61207 * 14 3 2 16 16 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 17 17 C 1.46503 * 125.75762 * 359.97438 * 16 2 1 18 18 C 1.50696 * 109.46974 * 90.00112 * 17 16 2 19 19 H 1.08001 * 120.00163 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99873 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99984 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00024 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47221 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46825 * 120.00079 * 22 20 18 25 25 H 1.48502 * 109.47073 * 240.00389 * 22 20 18 26 26 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 27 27 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 28 28 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 29 29 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 30 30 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 31 31 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 32 32 H 1.08999 * 109.46737 * 299.99175 * 8 7 6 33 33 H 1.08993 * 109.47411 * 59.99647 * 8 7 6 34 34 H 1.08993 * 109.47098 * 60.00283 * 11 10 9 35 35 H 1.09005 * 109.46495 * 179.97438 * 11 10 9 36 36 H 1.08993 * 109.47344 * 299.99876 * 11 10 9 37 37 H 1.08000 * 125.99145 * 179.77305 * 14 3 2 38 38 H 1.09004 * 109.46911 * 210.00324 * 17 16 2 39 39 H 1.09002 * 109.46643 * 329.99944 * 17 16 2 40 40 H 0.96997 * 120.00146 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5902 5.8251 0.0127 9 16 3.0510 7.5571 0.0120 10 16 2.2516 7.7920 1.8851 11 6 3.6923 7.8836 2.9837 12 8 1.5876 9.0471 1.8279 13 8 1.5282 6.5900 2.1106 14 6 3.6589 0.6498 -0.0059 15 7 3.6340 -0.6545 -0.0007 16 7 2.3016 -1.0822 -0.0005 17 6 1.8500 -2.4759 -0.0006 18 6 1.6946 -2.9535 -1.4214 19 1 1.9103 -2.2855 -2.2423 20 6 1.2772 -4.2431 -1.6734 21 7 1.0141 -5.0563 -0.6739 22 14 1.0839 -4.8349 -3.4347 23 1 1.4392 -3.7359 -4.3680 24 1 1.9834 -5.9930 -3.6691 25 1 -0.3239 -5.2465 -3.6669 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 3.7462 3.2972 0.0098 30 1 1.7699 5.1049 -0.8874 31 1 1.7618 5.1023 0.8925 32 1 4.1842 5.6296 0.9054 33 1 4.1932 5.6324 -0.8745 34 1 4.3141 8.7317 2.6974 35 1 3.3567 8.0106 4.0130 36 1 4.2714 6.9640 2.9009 37 1 4.5448 1.2675 -0.0108 38 1 2.5848 -3.0960 0.5130 39 1 0.8915 -2.5472 0.5136 40 1 0.7200 -5.9635 -0.8511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588190502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:19 Heat of formation + Delta-G solvation = -12.591525 kcal Electronic energy + Delta-G solvation = -25219.982456 eV Core-core repulsion = 21291.287205 eV Total energy + Delta-G solvation = -3928.695251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.80168 -38.92150 -38.32326 -37.17682 -35.32637 -33.90836 -32.18397 -31.41001 -30.76405 -30.50920 -27.38232 -26.64230 -24.03433 -23.14225 -21.88733 -21.58904 -20.03169 -19.50303 -19.04318 -17.38417 -17.21085 -16.99374 -16.77758 -16.50901 -15.84486 -15.57244 -15.14848 -14.67283 -14.47811 -14.22427 -14.17157 -13.98159 -13.78188 -13.41537 -13.23589 -13.19334 -12.76743 -12.56438 -12.49653 -12.44953 -12.13716 -12.10890 -11.97113 -11.78815 -11.47731 -11.11017 -10.91317 -10.47631 -10.38006 -10.20588 -9.92315 -9.73529 -9.40193 -9.00873 -8.72318 -8.60456 -7.93327 -6.34614 -4.42281 -1.98136 0.31480 1.09023 2.17758 2.37984 2.77426 2.92835 3.16653 3.17940 3.24869 3.31693 3.57388 3.83653 3.90282 3.97213 4.14896 4.17920 4.23846 4.73505 4.82812 4.98820 5.08326 5.25170 5.50073 5.55290 5.72892 5.81263 5.93364 6.13768 6.38858 6.48605 6.58803 6.78256 6.89762 7.13772 7.55293 7.66005 7.75997 7.77576 8.35631 8.58108 8.63769 9.24770 10.73663 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.001956 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.404142 B =14312.408904 C =14342.060351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.167 3.833 3 C -0.333 4.333 4 C 0.605 3.395 5 O -0.548 6.548 6 N -0.734 5.734 7 C 0.095 3.905 8 C -0.007 4.007 9 S -0.768 6.768 10 S 2.364 3.636 11 C -0.609 4.609 12 O -0.838 6.838 13 O -0.845 6.845 14 C 0.057 3.943 15 N -0.296 5.296 16 N -0.314 5.314 17 C 0.251 3.749 18 C -0.539 4.539 19 H 0.066 0.934 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.397 0.603 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.175 0.825 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.695 24.691 8.730 27.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.030 3.970 3 C -0.348 4.348 4 C 0.396 3.604 5 O -0.426 6.426 6 N -0.389 5.389 7 C -0.031 4.031 8 C -0.155 4.155 9 S -0.650 6.650 10 S 2.460 3.540 11 C -0.766 4.766 12 O -0.836 6.836 13 O -0.844 6.844 14 C -0.130 4.130 15 N -0.116 5.116 16 N -0.091 5.091 17 C 0.133 3.867 18 C -0.577 4.577 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.205 1.205 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.231 0.769 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.161 0.839 37 H 0.192 0.808 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.578 24.268 8.269 26.468 hybrid contribution 0.745 -0.441 -0.477 0.989 sum 7.323 23.826 7.791 26.116 Atomic orbital electron populations 1.20585 0.86767 1.03845 1.04000 1.21484 0.94998 0.86507 0.94050 1.19629 0.93164 0.92316 1.29708 1.17280 0.84951 0.83749 0.74464 1.90720 1.16623 1.84284 1.50983 1.45623 1.09850 1.04757 1.78657 1.22143 0.94679 0.80055 1.06183 1.23223 1.00945 0.83022 1.08319 1.91439 1.86929 1.26735 1.59928 1.11713 0.82149 0.78113 0.82019 1.30239 1.17932 1.13525 1.14949 1.93708 1.68567 1.40942 1.80373 1.93741 1.66516 1.44477 1.79618 1.23698 0.96249 0.92652 1.00430 1.77132 0.98684 1.12257 1.23477 1.49371 1.02454 1.08320 1.48918 1.19867 0.96431 0.70878 0.99478 1.21282 1.47333 0.98110 0.91006 0.91604 1.24928 0.94450 0.96010 0.98318 1.69920 1.44571 1.07151 1.31066 0.86268 0.77979 0.78835 0.83436 1.19522 1.20579 1.20532 0.89774 0.90845 0.88746 0.76862 0.89879 0.87492 0.88146 0.85378 0.83403 0.83216 0.83918 0.80786 0.92504 0.92521 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.57 36.01 0.34 -1.36 16 2 C 0.17 3.36 7.01 -81.61 -0.57 2.79 16 3 C -0.33 -5.91 6.13 -105.07 -0.64 -6.56 16 4 C 0.61 9.86 7.81 -12.52 -0.10 9.77 16 5 O -0.55 -10.60 14.84 5.28 0.08 -10.52 16 6 N -0.73 -8.29 5.55 -61.38 -0.34 -8.63 16 7 C 0.10 0.99 5.53 -4.04 -0.02 0.97 16 8 C -0.01 -0.05 5.98 37.16 0.22 0.17 16 9 S -0.77 -6.52 22.14 -89.68 -1.99 -8.50 16 10 S 2.36 13.98 6.00 -89.68 -0.54 13.45 16 11 C -0.61 -0.26 10.84 101.05 1.10 0.83 16 12 O -0.84 -7.76 18.00 -57.54 -1.04 -8.80 16 13 O -0.85 -7.53 14.68 -57.54 -0.84 -8.37 16 14 C 0.06 0.94 11.50 -16.98 -0.20 0.74 16 15 N -0.30 -6.18 12.50 30.86 0.39 -5.79 16 16 N -0.31 -6.99 3.56 -57.77 -0.21 -7.20 16 17 C 0.25 6.18 5.97 -5.19 -0.03 6.15 16 18 C -0.54 -14.43 9.39 -34.44 -0.32 -14.76 16 19 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -24.47 13.29 55.43 0.74 -23.74 16 22 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.07 1.29 7.05 -51.93 -0.37 0.92 16 28 H 0.09 1.64 6.50 -51.93 -0.34 1.31 16 29 H 0.40 3.11 7.43 -40.82 -0.30 2.81 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.11 1.27 4.97 -51.93 -0.26 1.01 16 32 H 0.10 0.25 8.14 -51.92 -0.42 -0.17 16 33 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.15 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.15 -0.20 8.14 -51.92 -0.42 -0.62 16 36 H 0.14 -0.18 8.14 -51.93 -0.42 -0.61 16 37 H 0.18 1.93 7.50 -52.49 -0.39 1.54 16 38 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.06 1.39 7.02 -51.93 -0.36 1.02 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -37.84 368.32 -8.49 -46.33 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.95 Total: 0.04 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.32 Total: 0.44 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.58 Total: -45.36 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -1.80 Total: -27.69 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 7.46 SS G_CDS: -2.52 Total: 4.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.84 -8.49 -46.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588190502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.741 kcal (2) G-P(sol) polarization free energy of solvation -37.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds