Wall clock time and date at job start Wed Apr 1 2020 04:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 9 9 S 1.81399 * 109.46917 * 179.97438 * 8 7 6 10 10 S 2.05011 * 102.99896 * 69.99736 * 9 8 7 11 11 C 1.81405 * 104.44594 * 74.99939 * 10 9 8 12 12 O 1.42103 * 104.27372 * 191.07133 * 10 9 8 13 13 O 1.42100 * 104.27420 * 318.92790 * 10 9 8 14 14 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 15 15 N 1.30448 * 108.02337 * 359.61207 * 14 3 2 16 16 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 17 17 C 1.46503 * 125.75762 * 359.97438 * 16 2 1 18 18 C 1.50696 * 109.46974 * 90.00112 * 17 16 2 19 19 H 1.08001 * 120.00163 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99873 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99984 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00024 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47221 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46825 * 120.00079 * 22 20 18 25 25 H 1.48502 * 109.47073 * 240.00389 * 22 20 18 26 26 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 27 27 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 28 28 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 29 29 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 30 30 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 31 31 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 32 32 H 1.08999 * 109.46737 * 299.99175 * 8 7 6 33 33 H 1.08993 * 109.47411 * 59.99647 * 8 7 6 34 34 H 1.08993 * 109.47098 * 60.00283 * 11 10 9 35 35 H 1.09005 * 109.46495 * 179.97438 * 11 10 9 36 36 H 1.08993 * 109.47344 * 299.99876 * 11 10 9 37 37 H 1.08000 * 125.99145 * 179.77305 * 14 3 2 38 38 H 1.09004 * 109.46911 * 210.00324 * 17 16 2 39 39 H 1.09002 * 109.46643 * 329.99944 * 17 16 2 40 40 H 0.96997 * 120.00146 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5902 5.8251 0.0127 9 16 3.0510 7.5571 0.0120 10 16 2.2516 7.7920 1.8851 11 6 3.6923 7.8836 2.9837 12 8 1.5876 9.0471 1.8279 13 8 1.5282 6.5900 2.1106 14 6 3.6589 0.6498 -0.0059 15 7 3.6340 -0.6545 -0.0007 16 7 2.3016 -1.0822 -0.0005 17 6 1.8500 -2.4759 -0.0006 18 6 1.6946 -2.9535 -1.4214 19 1 1.9103 -2.2855 -2.2423 20 6 1.2772 -4.2431 -1.6734 21 7 1.0141 -5.0563 -0.6739 22 14 1.0839 -4.8349 -3.4347 23 1 1.4392 -3.7359 -4.3680 24 1 1.9834 -5.9930 -3.6691 25 1 -0.3239 -5.2465 -3.6669 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 3.7462 3.2972 0.0098 30 1 1.7699 5.1049 -0.8874 31 1 1.7618 5.1023 0.8925 32 1 4.1842 5.6296 0.9054 33 1 4.1932 5.6324 -0.8745 34 1 4.3141 8.7317 2.6974 35 1 3.3567 8.0106 4.0130 36 1 4.2714 6.9640 2.9009 37 1 4.5448 1.2675 -0.0108 38 1 2.5848 -3.0960 0.5130 39 1 0.8915 -2.5472 0.5136 40 1 0.7200 -5.9635 -0.8511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588190502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:19 Heat of formation + Delta-G solvation = -43.025780 kcal Electronic energy + Delta-G solvation = -25221.302184 eV Core-core repulsion = 21291.287205 eV Total energy + Delta-G solvation = -3930.014979 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 347.081 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.28993 -40.15394 -38.90089 -37.71295 -36.37190 -35.79222 -33.87316 -32.81202 -31.81860 -30.69444 -29.09222 -28.15321 -25.53625 -24.46558 -23.11287 -22.08621 -21.32180 -20.55306 -20.03973 -18.86429 -18.49611 -17.77671 -17.50426 -17.19256 -17.00160 -16.72572 -16.42310 -16.24971 -15.91251 -15.37976 -14.97584 -14.68567 -14.28093 -14.24140 -14.20794 -14.10563 -13.98441 -13.76500 -13.67443 -13.56182 -13.32349 -13.19437 -13.05860 -12.96125 -12.79249 -12.70670 -12.50271 -12.32823 -11.83030 -11.71696 -11.03899 -10.81878 -10.76087 -10.29186 -10.24654 -10.10416 -9.41980 -8.37936 -6.53893 -2.35098 -0.10982 0.61900 0.69519 1.35201 1.36174 1.40046 1.49907 1.68400 2.05165 2.31911 2.39621 2.54640 2.59136 2.94361 3.49204 3.75508 3.76142 3.80646 3.91533 4.00732 4.14609 4.25426 4.35044 4.54276 4.63206 4.69640 4.78777 4.79851 4.89990 4.99662 5.08416 5.18750 5.44514 5.49968 5.71300 5.75436 6.05072 6.55443 6.63545 6.87720 7.17197 7.38274 8.70119 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.001956 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.404142 B =14312.408904 C =14342.060351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.144 3.856 3 C -0.329 4.329 4 C 0.604 3.396 5 O -0.585 6.585 6 N -0.708 5.708 7 C 0.093 3.907 8 C 0.007 3.993 9 S -0.833 6.833 10 S 2.354 3.646 11 C -0.559 4.559 12 O -0.887 6.887 13 O -0.886 6.886 14 C 0.083 3.917 15 N -0.336 5.336 16 N -0.339 5.339 17 C 0.267 3.733 18 C -0.554 4.554 19 H 0.051 0.949 20 C 0.023 3.977 21 N -0.917 5.917 22 Si 0.971 3.029 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.270 1.270 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.418 0.582 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.173 0.827 35 H 0.182 0.818 36 H 0.176 0.824 37 H 0.235 0.765 38 H 0.033 0.967 39 H 0.049 0.951 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.572 26.131 9.447 29.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.008 3.992 3 C -0.345 4.345 4 C 0.393 3.607 5 O -0.466 6.466 6 N -0.362 5.362 7 C -0.033 4.033 8 C -0.139 4.139 9 S -0.717 6.717 10 S 2.456 3.544 11 C -0.721 4.721 12 O -0.885 6.885 13 O -0.884 6.884 14 C -0.103 4.103 15 N -0.155 5.155 16 N -0.116 5.116 17 C 0.148 3.852 18 C -0.592 4.592 19 H 0.069 0.931 20 C -0.178 4.178 21 N -0.555 5.555 22 Si 0.795 3.205 23 H -0.198 1.198 24 H -0.198 1.198 25 H -0.195 1.195 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.256 0.744 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.191 0.809 35 H 0.199 0.801 36 H 0.194 0.806 37 H 0.251 0.749 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.459 25.736 8.963 28.847 hybrid contribution -0.070 -0.723 -0.550 0.911 sum 9.389 25.013 8.413 28.011 Atomic orbital electron populations 1.20543 0.86232 1.03956 1.03819 1.21939 0.95833 0.86935 0.94521 1.19888 0.93523 0.92609 1.28450 1.17164 0.85016 0.83949 0.74547 1.90710 1.18391 1.84697 1.52769 1.45315 1.10230 1.04295 1.76367 1.22150 0.96745 0.79955 1.04475 1.23281 0.98956 0.80064 1.11599 1.91598 1.87280 1.28646 1.64130 1.12252 0.84319 0.76264 0.81568 1.30096 1.12956 1.16464 1.12568 1.93638 1.72087 1.42299 1.80515 1.93679 1.69965 1.45460 1.79297 1.24585 0.97519 0.91527 0.96709 1.77091 0.98137 1.14574 1.25738 1.49089 1.03472 1.07660 1.51354 1.19363 0.95308 0.72431 0.98084 1.21416 1.47768 0.98389 0.91596 0.93068 1.25724 0.93886 0.95997 1.02218 1.69997 1.44933 1.07594 1.32937 0.85304 0.78406 0.78200 0.78562 1.19766 1.19763 1.19482 0.90075 0.91047 0.88179 0.74367 0.92438 0.88745 0.83254 0.83900 0.80891 0.80066 0.80607 0.74939 0.94884 0.93285 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.28 9.57 71.24 0.68 -2.60 16 2 C 0.14 5.85 7.01 42.14 0.30 6.15 16 3 C -0.33 -11.28 6.13 -20.15 -0.12 -11.41 16 4 C 0.60 18.90 7.81 86.67 0.68 19.58 16 5 O -0.58 -22.73 14.84 -4.04 -0.06 -22.79 16 6 N -0.71 -14.03 5.55 -466.36 -2.59 -16.62 16 7 C 0.09 1.79 5.53 86.38 0.48 2.27 16 8 C 0.01 0.07 5.98 71.98 0.43 0.50 16 9 S -0.83 -13.28 22.14 -20.04 -0.44 -13.72 16 10 S 2.35 24.97 6.00 -20.04 -0.12 24.85 16 11 C -0.56 2.58 10.84 113.37 1.23 3.81 16 12 O -0.89 -16.89 18.00 -127.65 -2.30 -19.18 16 13 O -0.89 -15.50 14.68 -127.65 -1.87 -17.37 16 14 C 0.08 2.53 11.50 85.65 0.99 3.52 16 15 N -0.34 -13.81 12.50 -56.28 -0.70 -14.51 16 16 N -0.34 -15.39 3.56 -336.70 -1.20 -16.59 16 17 C 0.27 13.68 5.97 85.63 0.51 14.19 16 18 C -0.55 -30.42 9.39 25.60 0.24 -30.18 16 19 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 20 C 0.02 1.24 5.46 84.65 0.46 1.71 16 21 N -0.92 -51.14 13.29 21.45 0.28 -50.86 16 22 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H 0.08 3.03 8.14 -2.39 -0.02 3.02 16 27 H 0.07 2.64 7.05 -2.39 -0.02 2.62 16 28 H 0.10 3.59 6.50 -2.39 -0.02 3.58 16 29 H 0.42 4.59 7.43 -92.71 -0.69 3.90 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 2.19 4.97 -2.39 -0.01 2.18 16 32 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.17 -1.38 8.14 -2.39 -0.02 -1.40 16 35 H 0.18 -1.62 8.14 -2.39 -0.02 -1.64 16 36 H 0.18 -1.74 8.14 -2.39 -0.02 -1.76 16 37 H 0.23 3.88 7.50 -2.91 -0.02 3.86 16 38 H 0.03 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.05 2.53 7.02 -2.39 -0.02 2.51 16 40 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -89.38 368.32 -0.71 -90.09 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 0.40 Total: 4.41 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.87 Total: 7.54 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -4.21 Total: -98.58 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -4.23 Total: -59.34 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 11.69 SS G_CDS: -0.56 Total: 11.13 kcal Total: -89.38 -0.71 -90.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588190502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.065 kcal (2) G-P(sol) polarization free energy of solvation -89.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds