Wall clock time and date at job start Wed Apr 1 2020 04:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46866 * 234.91902 * 3 2 1 5 5 C 1.36934 * 120.00253 * 273.65872 * 4 3 2 6 6 H 1.08003 * 120.00385 * 188.98263 * 5 4 3 7 7 C 1.38815 * 119.99864 * 8.97441 * 5 4 3 8 8 N 1.31620 * 119.99870 * 11.91242 * 7 5 4 9 9 Si 1.86804 * 120.00079 * 191.90726 * 7 5 4 10 10 H 1.48503 * 109.46938 * 90.00332 * 9 7 5 11 11 H 1.48500 * 109.46905 * 210.00395 * 9 7 5 12 12 H 1.48500 * 109.46946 * 330.00418 * 9 7 5 13 13 S 1.65603 * 120.00258 * 93.65639 * 4 3 2 14 14 O 1.42104 * 106.39937 * 17.54341 * 13 4 3 15 15 O 1.42101 * 106.40715 * 150.46125 * 13 4 3 16 16 C 1.76204 * 107.21858 * 264.00298 * 13 4 3 17 17 C 1.38051 * 120.05822 * 346.85407 * 16 13 4 18 18 C 1.38298 * 120.11195 * 179.76908 * 17 16 13 19 19 C 1.38334 * 120.23869 * 0.50768 * 18 17 16 20 20 C 1.38011 * 120.11762 * 359.74481 * 19 18 17 21 21 C 1.50699 * 120.05987 * 179.97438 * 20 19 18 22 22 C 1.39281 * 120.05676 * 167.12503 * 16 13 4 23 23 C 1.48467 * 120.11855 * 359.96221 * 22 16 13 24 24 N 1.34038 * 126.67456 * 7.47512 * 23 22 16 25 25 N 1.28982 * 107.26912 * 180.02562 * 24 23 22 26 26 N 1.28727 * 108.94216 * 0.02562 * 25 24 23 27 27 H 0.97007 * 125.34167 * 180.02562 * 26 25 24 28 28 N 1.28868 * 109.32075 * 359.72931 * 26 25 24 29 29 H 4.40641 * 5.51404 * 179.97438 * 4 1 2 30 30 H 1.08996 * 109.47170 * 114.92172 * 3 2 1 31 31 H 1.09001 * 109.47366 * 354.91797 * 3 2 1 32 32 H 0.96997 * 120.00024 * 179.97438 * 8 7 5 33 33 H 1.07997 * 119.94117 * 359.97438 * 17 16 13 34 34 H 1.07997 * 119.87647 * 180.22847 * 18 17 16 35 35 H 1.07996 * 119.94070 * 179.77248 * 19 18 17 36 36 H 1.08993 * 109.47468 * 270.02667 * 21 20 19 37 37 H 1.09003 * 109.47177 * 30.02372 * 21 20 19 38 38 H 1.08995 * 109.47009 * 150.02005 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7947 1.1303 5 6 3.2902 2.1488 0.9991 6 1 3.7836 2.7133 1.7764 7 6 2.8145 2.7958 -0.1332 8 7 2.0143 2.1634 -0.9652 9 14 3.3098 4.5641 -0.4759 10 1 4.5510 4.5813 -1.2910 11 1 2.2205 5.2482 -1.2181 12 1 3.5515 5.2683 0.8090 13 16 3.4965 0.0548 2.5668 14 8 3.6354 -1.3302 2.2809 15 8 4.5229 0.8306 3.1700 16 6 2.0810 0.2091 3.6048 17 6 1.0657 1.0804 3.2646 18 6 -0.0480 1.1989 4.0760 19 6 -0.1462 0.4538 5.2373 20 6 0.8655 -0.4164 5.5895 21 6 0.7574 -1.2271 6.8552 22 6 1.9872 -0.5436 4.7730 23 6 3.0784 -1.4784 5.1465 24 7 4.2678 -1.6034 4.5412 25 7 4.9222 -2.5208 5.1686 26 7 4.1947 -2.9687 6.1315 27 1 4.4556 -3.6643 6.7553 28 7 3.0677 -2.3438 6.1407 29 1 -1.0502 0.0000 -0.0003 30 1 3.0091 0.4338 -0.9319 31 1 3.0098 -1.0228 0.0910 32 1 1.6816 2.6156 -1.7562 33 1 1.1397 1.6681 2.3615 34 1 -0.8417 1.8790 3.8042 35 1 -1.0163 0.5528 5.8693 36 1 1.1966 -0.6696 7.6824 37 1 -0.2923 -1.4281 7.0694 38 1 1.2894 -2.1700 6.7293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588350096.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:48 Heat of formation + Delta-G solvation = 178.094082 kcal Electronic energy + Delta-G solvation = -29223.396109 eV Core-core repulsion = 25199.818407 eV Total energy + Delta-G solvation = -4023.577703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.27033 -39.05724 -36.34521 -35.68629 -34.56918 -34.01553 -33.72874 -32.22108 -31.87073 -31.06627 -30.39988 -27.03928 -26.48453 -24.52149 -24.24068 -23.64703 -22.13753 -20.90833 -19.10839 -18.45490 -17.89630 -16.99894 -16.94020 -16.58933 -16.30579 -15.80299 -14.95316 -14.48946 -14.38028 -14.23403 -13.90794 -13.69782 -13.43100 -13.28719 -12.97867 -12.49437 -12.36658 -12.04814 -11.81215 -11.78248 -11.54879 -11.26472 -11.10426 -11.03964 -10.87807 -10.75332 -10.70992 -10.59823 -10.55630 -10.33726 -10.11734 -9.75408 -9.64652 -9.17510 -8.81138 -8.71344 -8.31054 -8.21844 -6.40230 -3.97907 0.81991 1.38873 1.51337 1.72575 2.37854 2.60801 3.15224 3.21074 3.25124 3.72221 3.91620 3.92764 4.08116 4.23149 4.35360 4.61026 4.78919 4.95478 5.03977 5.24673 5.38534 5.45609 5.60584 5.61545 5.64222 5.74360 5.84045 5.98416 6.07034 6.12169 6.29052 6.43906 6.55559 6.58643 6.66453 6.74553 6.90927 7.09216 7.18724 7.26436 7.44861 8.29057 8.32874 8.68843 8.94197 9.10525 10.49089 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.004981 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.540709 B = 5620.010542 C = 6295.808525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.099 4.099 3 C 0.235 3.765 4 N -0.818 5.818 5 C -0.269 4.269 6 H 0.118 0.882 7 C 0.031 3.969 8 N -0.844 5.844 9 Si 0.927 3.073 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.266 1.266 13 S 2.588 3.412 14 O -0.976 6.976 15 O -0.965 6.965 16 C -0.619 4.619 17 C -0.029 4.029 18 C -0.117 4.117 19 C -0.096 4.096 20 C -0.074 4.074 21 C -0.128 4.128 22 C 0.053 3.947 23 C 0.207 3.793 24 N -0.245 5.245 25 N -0.036 5.036 26 N -0.238 5.238 27 H 0.472 0.528 28 N -0.291 5.291 29 H 0.195 0.805 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.273 0.727 33 H 0.155 0.845 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 -5.136 9.822 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.102 4.102 3 C 0.110 3.890 4 N -0.644 5.644 5 C -0.411 4.411 6 H 0.135 0.865 7 C -0.178 4.178 8 N -0.485 5.485 9 Si 0.753 3.247 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.190 1.190 13 S 2.679 3.321 14 O -0.964 6.964 15 O -0.954 6.954 16 C -0.697 4.697 17 C -0.048 4.048 18 C -0.137 4.137 19 C -0.114 4.114 20 C -0.077 4.077 21 C -0.185 4.185 22 C 0.049 3.951 23 C -0.072 4.072 24 N -0.118 5.118 25 N -0.032 5.032 26 N -0.083 5.083 27 H 0.326 0.674 28 N -0.142 5.142 29 H 0.212 0.788 30 H 0.149 0.851 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.172 0.828 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.767 -5.950 10.025 11.981 hybrid contribution -1.429 0.888 0.480 1.749 sum -4.195 -5.062 10.505 12.392 Atomic orbital electron populations 1.24179 0.95272 1.07122 1.03491 1.23505 0.94606 0.94625 0.97437 1.18600 0.83789 0.93865 0.92738 1.54504 1.74164 1.15917 1.19821 1.19902 1.31924 0.82783 1.06461 0.86471 1.25442 0.95359 1.00077 0.96927 1.70102 1.28588 1.36652 1.13122 0.85891 0.78381 0.81235 0.79171 1.19897 1.20804 1.19046 1.08699 0.76959 0.73929 0.72495 1.93386 1.86517 1.32895 1.83640 1.93405 1.54343 1.71036 1.76598 1.32601 1.23727 1.02784 1.10541 1.21165 0.90880 0.93833 0.98888 1.21437 0.98341 0.99205 0.94685 1.21031 0.97886 0.95626 0.96898 1.19896 0.93319 0.97824 0.96638 1.21175 1.02410 1.01031 0.93838 1.16581 0.90099 0.93876 0.94561 1.23892 0.94689 0.97349 0.91299 1.76079 1.03438 1.11701 1.20609 1.78882 1.19415 1.07072 0.97809 1.47849 1.08336 1.28733 1.23346 0.67405 1.74852 1.06231 1.10390 1.22755 0.78763 0.85118 0.90688 0.91575 0.82793 0.85367 0.85490 0.91341 0.91741 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.75 19.25 29.55 0.57 -5.18 16 2 C -0.10 -2.21 11.29 -37.12 -0.42 -2.63 16 3 C 0.24 5.39 5.43 -6.83 -0.04 5.35 16 4 N -0.82 -19.67 2.16 -62.78 -0.14 -19.80 16 5 C -0.27 -6.54 8.44 -15.06 -0.13 -6.66 16 6 H 0.12 2.86 7.25 -52.48 -0.38 2.48 16 7 C 0.03 0.71 5.22 -17.43 -0.09 0.62 16 8 N -0.84 -19.71 8.36 55.49 0.46 -19.25 16 9 Si 0.93 18.54 29.57 -169.99 -5.03 13.52 16 10 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 12 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 13 S 2.59 63.70 3.98 -107.50 -0.43 63.27 16 14 O -0.98 -25.05 13.94 -57.17 -0.80 -25.85 16 15 O -0.96 -25.94 16.46 -57.17 -0.94 -26.88 16 16 C -0.62 -13.66 5.85 -39.26 -0.23 -13.89 16 17 C -0.03 -0.58 9.54 -39.63 -0.38 -0.96 16 18 C -0.12 -1.91 10.04 -39.52 -0.40 -2.30 16 19 C -0.10 -1.43 9.69 -39.63 -0.38 -1.81 16 20 C -0.07 -1.22 5.91 -104.30 -0.62 -1.84 16 21 C -0.13 -1.64 9.31 36.01 0.34 -1.30 16 22 C 0.05 1.08 5.87 -104.89 -0.62 0.46 16 23 C 0.21 4.17 7.47 -156.31 -1.17 3.01 16 24 N -0.24 -5.42 7.84 32.16 0.25 -5.17 16 25 N -0.04 -0.64 13.47 60.35 0.81 0.17 16 26 N -0.24 -3.12 7.90 60.35 0.48 -2.64 16 27 H 0.47 3.22 8.96 -340.37 -3.05 0.17 16 28 N -0.29 -4.55 8.94 32.17 0.29 -4.27 16 29 H 0.20 3.26 7.80 -54.08 -0.42 2.84 16 30 H 0.13 3.03 6.14 -51.93 -0.32 2.71 16 31 H 0.08 1.65 6.91 -51.93 -0.36 1.29 16 32 H 0.27 6.11 8.31 -40.82 -0.34 5.77 16 33 H 0.15 3.26 6.34 -52.49 -0.33 2.93 16 34 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.10 1.30 5.02 -51.93 -0.26 1.03 16 LS Contribution 336.34 15.07 5.07 5.07 Total: -1.00 -32.61 336.34 -9.47 -42.08 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.95 Total: 6.90 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -3.56 Total: -27.15 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 2.16 Total: -50.96 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -1.74 Total: -52.73 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.52 kcal Atomic # 16 Polarization: 63.70 SS G_CDS: -0.43 Total: 63.27 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.61 -9.47 -42.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350096.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.177 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds