Wall clock time and date at job start Wed Apr 1 2020 04:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46866 * 234.91902 * 3 2 1 5 5 C 1.36934 * 120.00253 * 273.65872 * 4 3 2 6 6 H 1.08003 * 120.00385 * 188.98263 * 5 4 3 7 7 C 1.38815 * 119.99864 * 8.97441 * 5 4 3 8 8 N 1.31620 * 119.99870 * 11.91242 * 7 5 4 9 9 Si 1.86804 * 120.00079 * 191.90726 * 7 5 4 10 10 H 1.48503 * 109.46938 * 90.00332 * 9 7 5 11 11 H 1.48500 * 109.46905 * 210.00395 * 9 7 5 12 12 H 1.48500 * 109.46946 * 330.00418 * 9 7 5 13 13 S 1.65603 * 120.00258 * 93.65639 * 4 3 2 14 14 O 1.42104 * 106.39937 * 17.54341 * 13 4 3 15 15 O 1.42101 * 106.40715 * 150.46125 * 13 4 3 16 16 C 1.76204 * 107.21858 * 264.00298 * 13 4 3 17 17 C 1.38051 * 120.05822 * 346.85407 * 16 13 4 18 18 C 1.38298 * 120.11195 * 179.76908 * 17 16 13 19 19 C 1.38334 * 120.23869 * 0.50768 * 18 17 16 20 20 C 1.38011 * 120.11762 * 359.74481 * 19 18 17 21 21 C 1.50699 * 120.05987 * 179.97438 * 20 19 18 22 22 C 1.39281 * 120.05676 * 167.12503 * 16 13 4 23 23 C 1.48467 * 120.11855 * 359.96221 * 22 16 13 24 24 N 1.34038 * 126.67456 * 7.47512 * 23 22 16 25 25 N 1.28982 * 107.26912 * 180.02562 * 24 23 22 26 26 N 1.28727 * 108.94216 * 0.02562 * 25 24 23 27 27 H 0.97007 * 125.34167 * 180.02562 * 26 25 24 28 28 N 1.28868 * 109.32075 * 359.72931 * 26 25 24 29 29 H 4.40641 * 5.51404 * 179.97438 * 4 1 2 30 30 H 1.08996 * 109.47170 * 114.92172 * 3 2 1 31 31 H 1.09001 * 109.47366 * 354.91797 * 3 2 1 32 32 H 0.96997 * 120.00024 * 179.97438 * 8 7 5 33 33 H 1.07997 * 119.94117 * 359.97438 * 17 16 13 34 34 H 1.07997 * 119.87647 * 180.22847 * 18 17 16 35 35 H 1.07996 * 119.94070 * 179.77248 * 19 18 17 36 36 H 1.08993 * 109.47468 * 270.02667 * 21 20 19 37 37 H 1.09003 * 109.47177 * 30.02372 * 21 20 19 38 38 H 1.08995 * 109.47009 * 150.02005 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7947 1.1303 5 6 3.2902 2.1488 0.9991 6 1 3.7836 2.7133 1.7764 7 6 2.8145 2.7958 -0.1332 8 7 2.0143 2.1634 -0.9652 9 14 3.3098 4.5641 -0.4759 10 1 4.5510 4.5813 -1.2910 11 1 2.2205 5.2482 -1.2181 12 1 3.5515 5.2683 0.8090 13 16 3.4965 0.0548 2.5668 14 8 3.6354 -1.3302 2.2809 15 8 4.5229 0.8306 3.1700 16 6 2.0810 0.2091 3.6048 17 6 1.0657 1.0804 3.2646 18 6 -0.0480 1.1989 4.0760 19 6 -0.1462 0.4538 5.2373 20 6 0.8655 -0.4164 5.5895 21 6 0.7574 -1.2271 6.8552 22 6 1.9872 -0.5436 4.7730 23 6 3.0784 -1.4784 5.1465 24 7 4.2678 -1.6034 4.5412 25 7 4.9222 -2.5208 5.1686 26 7 4.1947 -2.9687 6.1315 27 1 4.4556 -3.6643 6.7553 28 7 3.0677 -2.3438 6.1407 29 1 -1.0502 0.0000 -0.0003 30 1 3.0091 0.4338 -0.9319 31 1 3.0098 -1.0228 0.0910 32 1 1.6816 2.6156 -1.7562 33 1 1.1397 1.6681 2.3615 34 1 -0.8417 1.8790 3.8042 35 1 -1.0163 0.5528 5.8693 36 1 1.1966 -0.6696 7.6824 37 1 -0.2923 -1.4281 7.0694 38 1 1.2894 -2.1700 6.7293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588350096.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:46 Heat of formation + Delta-G solvation = 155.652553 kcal Electronic energy + Delta-G solvation = -29224.369247 eV Core-core repulsion = 25199.818407 eV Total energy + Delta-G solvation = -4024.550840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -45.62008 -40.38233 -38.12211 -37.65055 -36.39782 -35.53544 -35.07068 -33.63819 -33.48376 -32.81535 -31.74209 -28.42288 -28.07005 -25.91403 -25.68920 -25.31982 -23.54095 -22.24732 -20.46091 -20.20413 -19.59984 -18.62051 -18.32521 -18.27867 -17.95454 -17.30380 -16.54687 -16.17574 -16.01295 -15.62835 -15.25342 -15.22488 -15.01790 -14.76588 -14.43676 -14.17201 -13.68468 -13.37186 -13.23942 -13.17880 -13.12512 -12.85863 -12.71821 -12.62690 -12.53392 -12.48908 -12.32418 -12.16135 -12.06048 -11.92677 -11.80483 -11.48409 -11.29837 -10.87879 -10.53657 -10.09286 -9.99068 -9.63632 -8.16285 -5.83008 -0.55403 -0.09746 0.03405 0.15930 1.16913 1.33041 1.52925 1.57030 1.65134 2.08110 2.39934 2.46609 2.53896 2.57678 2.89391 2.97746 3.01771 3.24726 3.83575 3.94291 3.99284 4.01905 4.19386 4.23315 4.32160 4.35368 4.54895 4.64103 4.79696 4.84581 4.88089 5.06943 5.19390 5.26801 5.33411 5.35781 5.39669 5.51008 5.66596 5.67126 5.91422 6.47090 6.87297 6.95795 7.26295 7.30474 8.72780 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.004981 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.540709 B = 5620.010542 C = 6295.808525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.141 4.141 3 C 0.238 3.762 4 N -0.829 5.829 5 C -0.298 4.298 6 H 0.103 0.897 7 C 0.005 3.995 8 N -0.856 5.856 9 Si 0.983 3.017 10 H -0.274 1.274 11 H -0.274 1.274 12 H -0.267 1.267 13 S 2.606 3.394 14 O -0.998 6.998 15 O -1.002 7.002 16 C -0.651 4.651 17 C -0.046 4.046 18 C -0.113 4.113 19 C -0.077 4.077 20 C -0.071 4.071 21 C -0.126 4.126 22 C 0.025 3.975 23 C 0.181 3.819 24 N -0.305 5.305 25 N -0.048 5.048 26 N -0.195 5.195 27 H 0.498 0.502 28 N -0.261 5.261 29 H 0.232 0.768 30 H 0.122 0.878 31 H 0.071 0.929 32 H 0.275 0.725 33 H 0.133 0.867 34 H 0.164 0.836 35 H 0.181 0.819 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.222 -5.223 12.158 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.143 4.143 3 C 0.113 3.887 4 N -0.655 5.655 5 C -0.438 4.438 6 H 0.121 0.879 7 C -0.202 4.202 8 N -0.496 5.496 9 Si 0.806 3.194 10 H -0.199 1.199 11 H -0.199 1.199 12 H -0.192 1.192 13 S 2.702 3.298 14 O -0.986 6.986 15 O -0.992 6.992 16 C -0.735 4.735 17 C -0.065 4.065 18 C -0.132 4.132 19 C -0.094 4.094 20 C -0.074 4.074 21 C -0.182 4.182 22 C 0.020 3.980 23 C -0.098 4.098 24 N -0.177 5.177 25 N -0.044 5.044 26 N -0.047 5.047 27 H 0.358 0.642 28 N -0.114 5.114 29 H 0.249 0.751 30 H 0.140 0.860 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.181 0.819 35 H 0.198 0.802 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.854 -6.052 12.308 14.913 hybrid contribution -0.558 0.753 -0.024 0.938 sum -6.412 -5.299 12.284 14.835 Atomic orbital electron populations 1.24992 0.96083 1.05055 1.01450 1.23558 0.94952 0.96502 0.99317 1.18454 0.84928 0.93303 0.92026 1.54233 1.75436 1.15858 1.19998 1.19852 1.33757 0.82991 1.07178 0.87915 1.26014 0.94996 1.02941 0.96208 1.70189 1.28740 1.37550 1.13149 0.85074 0.78096 0.77431 0.78758 1.19922 1.19859 1.19183 1.07310 0.76892 0.72995 0.72593 1.93335 1.87215 1.33843 1.84255 1.93338 1.56694 1.71751 1.77428 1.31946 1.23477 1.06043 1.12030 1.21114 0.92243 0.93860 0.99322 1.21828 0.97505 0.99479 0.94381 1.21640 0.98506 0.93074 0.96203 1.20435 0.91992 0.97910 0.97109 1.21261 1.04801 1.00066 0.92118 1.16930 0.91770 0.94331 0.94932 1.24101 0.94584 0.98688 0.92435 1.76029 1.05076 1.13730 1.22853 1.78777 1.19719 1.07067 0.98809 1.47946 1.07049 1.27657 1.22052 0.64172 1.74849 1.06346 1.09218 1.20996 0.75107 0.86045 0.91134 0.91397 0.84881 0.81866 0.80173 0.89965 0.88219 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.26 19.25 74.32 1.43 -8.83 16 2 C -0.14 -6.43 11.29 31.12 0.35 -6.07 16 3 C 0.24 11.54 5.43 84.57 0.46 12.00 16 4 N -0.83 -42.33 2.16 -352.53 -0.76 -43.09 16 5 C -0.30 -15.29 8.44 84.03 0.71 -14.58 16 6 H 0.10 5.41 7.25 -2.91 -0.02 5.39 16 7 C 0.01 0.25 5.22 84.86 0.44 0.69 16 8 N -0.86 -40.89 8.36 21.65 0.18 -40.71 16 9 Si 0.98 38.70 29.57 68.60 2.03 40.72 16 10 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 11 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 12 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 13 S 2.61 136.18 3.98 -56.49 -0.23 135.96 16 14 O -1.00 -54.45 13.94 -128.00 -1.78 -56.24 16 15 O -1.00 -57.76 16.46 -128.00 -2.11 -59.87 16 16 C -0.65 -29.53 5.85 22.48 0.13 -29.40 16 17 C -0.05 -1.87 9.54 22.24 0.21 -1.65 16 18 C -0.11 -3.33 10.04 22.31 0.22 -3.10 16 19 C -0.08 -1.91 9.69 22.24 0.22 -1.69 16 20 C -0.07 -2.14 5.91 -19.66 -0.12 -2.25 16 21 C -0.13 -2.66 9.31 71.24 0.66 -2.00 16 22 C 0.02 1.00 5.87 -20.04 -0.12 0.88 16 23 C 0.18 7.33 7.47 137.38 1.03 8.35 16 24 N -0.30 -13.95 7.84 -52.18 -0.41 -14.36 16 25 N -0.05 -1.75 13.47 37.02 0.50 -1.25 16 26 N -0.20 -4.85 7.90 37.02 0.29 -4.56 16 27 H 0.50 5.60 8.96 -347.53 -3.12 2.49 16 28 N -0.26 -7.77 8.94 -52.13 -0.47 -8.23 16 29 H 0.23 7.07 7.80 -4.41 -0.03 7.03 16 30 H 0.12 5.99 6.14 -2.39 -0.01 5.97 16 31 H 0.07 3.35 6.91 -2.39 -0.02 3.34 16 32 H 0.28 12.42 8.31 -92.71 -0.77 11.65 16 33 H 0.13 5.85 6.34 -2.91 -0.02 5.83 16 34 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 35 H 0.18 2.61 8.06 -2.91 -0.02 2.58 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 37 H 0.10 1.44 8.09 -2.39 -0.02 1.42 16 38 H 0.09 2.07 5.02 -2.39 -0.01 2.06 16 Total: -1.00 -76.72 336.34 0.91 -75.81 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -1.97 Total: 23.48 kcal Atomic # 6 Polarization: -53.30 SS G_CDS: 5.63 Total: -47.67 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -0.66 Total: -112.19 kcal Atomic # 8 Polarization: -112.22 SS G_CDS: -3.89 Total: -116.11 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.72 kcal Atomic # 16 Polarization: 136.18 SS G_CDS: -0.23 Total: 135.96 kcal Total: -76.72 0.91 -75.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350096.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.464 kcal (2) G-P(sol) polarization free energy of solvation -76.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds