Wall clock time and date at job start Wed Apr 1 2020 04:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47085 * 61.76277 * 3 2 1 5 5 C 1.36941 * 119.99963 * 273.04453 * 4 3 2 6 6 H 1.07995 * 120.00188 * 190.07913 * 5 4 3 7 7 C 1.38815 * 119.99583 * 10.07550 * 5 4 3 8 8 N 1.31616 * 120.00375 * 12.43370 * 7 5 4 9 9 Si 1.86800 * 119.99734 * 192.43111 * 7 5 4 10 10 H 1.48505 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47173 * 120.00041 * 9 7 5 12 12 H 1.48501 * 109.47156 * 240.00472 * 9 7 5 13 13 S 1.65601 * 120.00201 * 93.04277 * 4 3 2 14 14 O 1.42102 * 106.40323 * 340.16792 * 13 4 3 15 15 O 1.42102 * 106.40277 * 207.24441 * 13 4 3 16 16 C 1.76201 * 107.21853 * 93.70755 * 13 4 3 17 17 C 1.38059 * 120.05929 * 13.09090 * 16 13 4 18 18 C 1.38290 * 120.11809 * 180.27442 * 17 16 13 19 19 C 1.38335 * 120.23437 * 359.72923 * 18 17 16 20 20 C 1.50703 * 119.94198 * 179.97438 * 19 18 17 21 21 C 1.38005 * 120.12153 * 359.97240 * 19 18 17 22 22 C 1.39279 * 120.06288 * 192.79908 * 16 13 4 23 23 C 1.48459 * 120.11392 * 359.97438 * 22 16 13 24 24 N 1.34055 * 126.67611 * 354.30480 * 23 22 16 25 25 N 1.28985 * 107.27041 * 179.97438 * 24 23 22 26 26 N 1.28737 * 108.94093 * 0.02562 * 25 24 23 27 27 H 0.96997 * 125.33877 * 180.02562 * 26 25 24 28 28 N 1.28867 * 109.31765 * 359.97438 * 26 25 24 29 29 H 4.40642 * 5.51390 * 180.02562 * 4 1 2 30 30 H 1.08993 * 109.47151 * 301.75982 * 3 2 1 31 31 H 1.09003 * 109.46688 * 181.75667 * 3 2 1 32 32 H 0.96996 * 120.00368 * 179.97438 * 8 7 5 33 33 H 1.07999 * 119.93735 * 0.02562 * 17 16 13 34 34 H 1.07998 * 119.88203 * 179.74023 * 18 17 16 35 35 H 1.09001 * 109.47647 * 269.98066 * 20 19 18 36 36 H 1.08997 * 109.46739 * 29.97990 * 20 19 18 37 37 H 1.09002 * 109.47263 * 149.97858 * 20 19 18 38 38 H 1.08001 * 120.06605 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6526 -1.2169 5 6 3.3041 -2.0112 -1.2438 6 1 3.8138 -2.4755 -2.0750 7 6 2.8206 -2.7917 -0.2025 8 7 1.9946 -2.2722 0.6807 9 14 3.3424 -4.5792 -0.0550 10 1 4.2699 -4.9173 -1.1644 11 1 4.0291 -4.7888 1.2449 12 1 2.1435 -5.4525 -0.1281 13 16 3.4820 0.2518 -2.5599 14 8 2.7922 1.4843 -2.4031 15 8 3.2986 -0.6046 -3.6789 16 6 5.2013 0.6330 -2.5016 17 6 6.0272 -0.0310 -1.6168 18 6 7.3758 0.2712 -1.5661 19 6 7.9055 1.2355 -2.4045 20 6 9.3759 1.5600 -2.3433 21 6 7.0900 1.9010 -3.2970 22 6 5.7307 1.6005 -3.3523 23 6 4.8486 2.3127 -4.3107 24 7 3.5532 2.0605 -4.5462 25 7 3.1569 2.8982 -5.4434 26 7 4.1446 3.6551 -5.7737 27 1 4.1096 4.3688 -6.4296 28 7 5.1867 3.3163 -5.0955 29 1 -1.0499 0.0001 -0.0002 30 1 3.0095 -0.5401 0.8737 31 1 3.0088 1.0281 0.0315 32 1 1.6565 -2.8176 1.4081 33 1 5.6187 -0.7850 -0.9603 34 1 8.0176 -0.2477 -0.8695 35 1 9.5421 2.3583 -1.6199 36 1 9.9314 0.6728 -2.0393 37 1 9.7179 1.8836 -3.3264 38 1 7.5044 2.6540 -3.9509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588350228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:54 Heat of formation + Delta-G solvation = 173.307401 kcal Electronic energy + Delta-G solvation = -28724.225570 eV Core-core repulsion = 24700.440301 eV Total energy + Delta-G solvation = -4023.785269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -44.39702 -39.28207 -36.15477 -35.96420 -34.86622 -34.26028 -33.72588 -32.60417 -31.58564 -30.91210 -30.47433 -27.29963 -26.36095 -24.89809 -24.38791 -23.54885 -22.00159 -21.30861 -19.21531 -18.46523 -17.86932 -17.55783 -17.07093 -16.46316 -16.14474 -15.86077 -15.18409 -14.48829 -14.35359 -14.22680 -13.99887 -13.88494 -13.64727 -13.32156 -13.02813 -12.48011 -12.42273 -12.42078 -12.18694 -11.91261 -11.44882 -11.36850 -11.33406 -11.10861 -10.96908 -10.88161 -10.82803 -10.72458 -10.66076 -10.34102 -10.06509 -10.01215 -9.59048 -8.96529 -8.90315 -8.66431 -8.61633 -8.03486 -6.06292 -3.80388 0.59774 1.16902 1.33090 1.48162 2.26403 2.42153 3.23596 3.33112 3.36217 3.58239 3.66764 3.96644 4.17334 4.28576 4.46999 4.62094 4.69408 4.82068 4.98915 5.07331 5.13301 5.28772 5.38706 5.44320 5.51184 5.65872 5.69480 5.79666 5.86270 5.88759 6.02794 6.22658 6.27506 6.35992 6.41094 6.48773 6.92018 6.96975 7.22414 7.46564 7.66778 8.18750 8.48187 8.99406 9.19327 9.37454 10.88486 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.005183 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.936388 B = 5401.415154 C = 6911.548993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.086 4.086 3 C 0.251 3.749 4 N -0.855 5.855 5 C -0.324 4.324 6 H 0.108 0.892 7 C 0.040 3.960 8 N -0.875 5.875 9 Si 0.913 3.087 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.283 1.283 13 S 2.681 3.319 14 O -0.957 6.957 15 O -0.951 6.951 16 C -0.639 4.639 17 C -0.022 4.022 18 C -0.122 4.122 19 C -0.055 4.055 20 C -0.116 4.116 21 C -0.105 4.105 22 C 0.073 3.927 23 C 0.196 3.804 24 N -0.245 5.245 25 N -0.031 5.031 26 N -0.232 5.232 27 H 0.475 0.525 28 N -0.287 5.287 29 H 0.195 0.805 30 H 0.123 0.877 31 H 0.055 0.945 32 H 0.264 0.736 33 H 0.161 0.839 34 H 0.134 0.866 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.240 9.830 -4.958 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.088 4.088 3 C 0.126 3.874 4 N -0.688 5.688 5 C -0.453 4.453 6 H 0.125 0.875 7 C -0.164 4.164 8 N -0.515 5.515 9 Si 0.741 3.259 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.209 1.209 13 S 2.766 3.234 14 O -0.945 6.945 15 O -0.941 6.941 16 C -0.721 4.721 17 C -0.040 4.040 18 C -0.142 4.142 19 C -0.055 4.055 20 C -0.173 4.173 21 C -0.125 4.125 22 C 0.069 3.931 23 C -0.084 4.084 24 N -0.119 5.119 25 N -0.027 5.027 26 N -0.077 5.077 27 H 0.329 0.671 28 N -0.139 5.139 29 H 0.212 0.788 30 H 0.140 0.860 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.178 0.822 34 H 0.152 0.848 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.113 10.162 -5.797 16.136 hybrid contribution 0.908 -0.613 0.216 1.116 sum 12.021 9.550 -5.580 16.335 Atomic orbital electron populations 1.24142 0.95320 1.07653 1.03216 1.23085 0.94297 0.94041 0.97419 1.18052 0.84615 0.93944 0.90796 1.53205 1.73798 1.15055 1.26782 1.19325 1.38070 0.79805 1.08114 0.87487 1.25054 0.95637 0.99124 0.96571 1.70055 1.29561 1.35962 1.15935 0.86079 0.78602 0.83180 0.78077 1.19385 1.20801 1.20936 1.02609 0.74246 0.73060 0.73447 1.93506 1.70235 1.44688 1.86113 1.93487 1.84323 1.66821 1.49481 1.32080 1.30736 1.05138 1.04104 1.21245 0.92967 0.95605 0.94229 1.21361 0.95698 0.97866 0.99246 1.20003 0.96121 0.94912 0.94481 1.20858 0.91041 1.02497 1.02890 1.20993 0.91490 1.00397 0.99660 1.16550 0.91287 0.93510 0.91742 1.23848 0.91070 0.94785 0.98741 1.76098 1.08619 1.18236 1.08948 1.78937 1.14464 1.00287 1.09026 1.47729 1.03721 1.26837 1.29410 0.67097 1.74752 1.13949 1.16000 1.09159 0.78764 0.85986 0.92669 0.92436 0.82195 0.84837 0.90634 0.90974 0.91240 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.72 19.25 29.55 0.57 -6.16 16 2 C -0.09 -2.16 11.29 -37.12 -0.42 -2.58 16 3 C 0.25 5.91 5.11 -6.83 -0.03 5.88 16 4 N -0.85 -20.93 2.10 -62.77 -0.13 -21.06 16 5 C -0.32 -8.26 8.49 -15.06 -0.13 -8.38 16 6 H 0.11 2.71 7.48 -52.49 -0.39 2.32 16 7 C 0.04 1.01 5.20 -17.43 -0.09 0.92 16 8 N -0.88 -22.69 8.41 55.49 0.47 -22.23 16 9 Si 0.91 19.81 29.57 -169.99 -5.03 14.78 16 10 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 S 2.68 64.32 3.96 -107.50 -0.43 63.90 16 14 O -0.96 -24.06 14.30 -57.17 -0.82 -24.87 16 15 O -0.95 -25.46 16.58 -57.17 -0.95 -26.41 16 16 C -0.64 -12.68 5.85 -39.26 -0.23 -12.91 16 17 C -0.02 -0.37 9.56 -39.63 -0.38 -0.75 16 18 C -0.12 -1.65 9.69 -39.53 -0.38 -2.03 16 19 C -0.06 -0.68 5.88 -104.67 -0.61 -1.30 16 20 C -0.12 -0.96 10.01 36.01 0.36 -0.60 16 21 C -0.10 -1.49 9.35 -39.26 -0.37 -1.85 16 22 C 0.07 1.34 5.87 -104.89 -0.62 0.72 16 23 C 0.20 3.67 7.63 -156.30 -1.19 2.48 16 24 N -0.25 -5.21 7.80 32.16 0.25 -4.96 16 25 N -0.03 -0.54 13.47 60.35 0.81 0.28 16 26 N -0.23 -2.86 7.90 60.35 0.48 -2.38 16 27 H 0.47 2.91 8.96 -340.37 -3.05 -0.14 16 28 N -0.29 -4.23 12.09 32.17 0.39 -3.84 16 29 H 0.20 3.82 7.80 -54.10 -0.42 3.40 16 30 H 0.12 2.86 6.20 -51.93 -0.32 2.54 16 31 H 0.06 1.16 7.58 -51.93 -0.39 0.77 16 32 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 33 H 0.16 2.72 6.52 -52.49 -0.34 2.38 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 38 H 0.14 1.59 7.89 -52.49 -0.41 1.17 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -35.61 343.79 -9.46 -45.06 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.16 Total: 3.12 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -3.53 Total: -26.57 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 2.26 Total: -54.20 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -1.77 Total: -51.28 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Atomic # 16 Polarization: 64.32 SS G_CDS: -0.43 Total: 63.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.61 -9.46 -45.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.369 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds