Wall clock time and date at job start Wed Apr 1 2020 04:47:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17400 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46495 * 109.46803 * 237.91830 * 3 2 1
5 5 C 1.36935 * 120.00546 * 270.73331 * 4 3 2
6 6 H 1.08000 * 120.00771 * 205.63947 * 5 4 3
7 7 C 1.38815 * 119.99861 * 25.62942 * 5 4 3
8 8 N 1.31624 * 119.99750 * 6.96644 * 7 5 4
9 9 Si 1.86798 * 120.00226 * 186.95467 * 7 5 4
10 10 H 1.48509 * 109.46862 * 60.00676 * 9 7 5
11 11 H 1.48506 * 109.47134 * 180.02562 * 9 7 5
12 12 H 1.48495 * 109.47480 * 300.00828 * 9 7 5
13 13 S 1.65607 * 120.00177 * 90.73367 * 4 3 2
14 14 O 1.42094 * 106.40541 * 226.24540 * 13 4 3
15 15 O 1.42102 * 106.39776 * 359.16967 * 13 4 3
16 16 C 1.76202 * 107.21808 * 112.70418 * 13 4 3
17 17 C 1.38049 * 120.05938 * 341.76177 * 16 13 4
18 18 C 1.50705 * 119.94185 * 0.02562 * 17 16 13
19 19 C 1.38298 * 120.11492 * 179.76984 * 17 16 13
20 20 C 1.38339 * 120.23661 * 0.50597 * 19 17 16
21 21 C 1.38007 * 120.11439 * 359.75376 * 20 19 17
22 22 C 1.39279 * 120.05630 * 162.04204 * 16 13 4
23 23 C 1.48460 * 120.11962 * 359.97438 * 22 16 13
24 24 N 1.34046 * 126.67332 * 6.12247 * 23 22 16
25 25 N 1.28982 * 107.26756 * 179.83386 * 24 23 22
26 26 N 1.28727 * 108.94453 * 0.43248 * 25 24 23
27 27 H 0.96998 * 125.34324 * 179.74453 * 26 25 24
28 28 N 1.28873 * 109.31741 * 359.72589 * 26 25 24
29 29 H 4.40635 * 5.51374 * 180.02562 * 4 1 2
30 30 H 1.09000 * 109.46595 * 117.92567 * 3 2 1
31 31 H 1.08996 * 109.47715 * 357.92085 * 3 2 1
32 32 H 0.97000 * 119.99861 * 180.02562 * 8 7 5
33 33 H 1.09000 * 109.46976 * 85.28157 * 18 17 16
34 34 H 1.08995 * 109.46960 * 205.28178 * 18 17 16
35 35 H 1.08999 * 109.47122 * 325.28401 * 18 17 16
36 36 H 1.08000 * 119.87768 * 180.24118 * 19 17 16
37 37 H 1.07993 * 119.93791 * 179.76683 * 20 19 17
38 38 H 1.08003 * 120.05568 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1339 0.7345 1.1703
5 6 3.3472 2.0848 1.0918
6 1 4.0613 2.5579 1.7495
7 6 2.6457 2.8457 0.1667
8 7 1.6796 2.2973 -0.5392
9 14 3.0725 4.6480 -0.0762
10 1 4.4871 4.7672 -0.5127
11 1 2.1835 5.2319 -1.1125
12 1 2.8863 5.3777 1.2036
13 16 3.4276 -0.0690 2.5883
14 8 2.8365 0.7088 3.6201
15 8 3.0954 -1.4307 2.3540
16 6 5.1672 -0.0217 2.8640
17 6 6.0252 0.2627 1.8205
18 6 5.4727 0.5333 0.4448
19 6 7.3906 0.3048 2.0367
20 6 7.9047 0.0523 3.2959
21 6 7.0561 -0.2383 4.3448
22 6 5.6795 -0.2769 4.1338
23 6 4.7619 -0.5888 5.2584
24 7 3.4363 -0.7725 5.1827
25 7 3.0161 -1.0254 6.3756
26 7 4.0162 -0.9978 7.1856
27 1 3.9680 -1.1522 8.1420
28 7 5.0915 -0.7333 6.5264
29 1 -1.0501 -0.0003 -0.0001
30 1 3.0090 0.4821 -0.9080
31 1 3.0099 -1.0261 0.0373
32 1 1.1896 2.8288 -1.1859
33 1 5.1992 1.5853 0.3636
34 1 6.2287 0.2956 -0.3035
35 1 4.5906 -0.0852 0.2794
36 1 8.0581 0.5315 1.2184
37 1 8.9719 0.0828 3.4584
38 1 7.4585 -0.4348 5.3276
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001588350359.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:47:04
Heat of formation + Delta-G solvation = 203.660292 kcal
Electronic energy + Delta-G solvation = -29461.833280 eV
Core-core repulsion = 25439.364212 eV
Total energy + Delta-G solvation = -4022.469069 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.084 amu
Computer time = 1.58 seconds
Orbital eigenvalues (eV)
-44.32369 -39.24242 -36.75800 -35.90851 -34.82235 -34.10635 -33.65874 -32.33038
-31.61300 -30.82310 -30.61659 -26.56240 -26.38325 -24.76888 -24.45281 -23.62881
-22.36179 -20.82600 -19.19411 -18.51294 -17.95970 -17.25410 -17.00376 -16.50477
-16.37535 -15.70915 -15.10281 -14.70118 -14.45811 -14.26174 -13.92022 -13.57434
-13.46725 -13.20129 -13.00363 -12.45218 -12.21524 -12.09523 -11.92046 -11.51652
-11.36868 -11.32088 -11.13218 -11.04132 -11.01761 -10.88074 -10.84218 -10.68803
-10.50329 -10.27310 -10.05221 -9.97308 -9.32428 -8.96985 -8.84375 -8.55280
-8.40811 -7.95111 -6.05748 -3.91248 0.65228 1.23545 1.39745 1.50513
2.32584 2.49664 3.21492 3.28327 3.30414 3.65225 3.75019 3.99881
4.24488 4.25101 4.49907 4.61947 4.73203 4.99926 5.04538 5.11644
5.25775 5.41912 5.47837 5.54393 5.73045 5.80967 5.89316 5.95548
6.04506 6.27382 6.37318 6.38642 6.41957 6.48844 6.64290 6.81739
6.87453 7.09670 7.23614 7.37828 7.58871 8.25940 8.39374 8.97393
9.24811 9.33974 10.84572
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.012402 B = 0.005524 C = 0.004719
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2257.223056 B = 5067.434975 C = 5932.549656
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.279 4.279
2 C -0.091 4.091
3 C 0.256 3.744
4 N -0.860 5.860
5 C -0.317 4.317
6 H 0.096 0.904
7 C 0.045 3.955
8 N -0.860 5.860
9 Si 0.911 3.089
10 H -0.274 1.274
11 H -0.284 1.284
12 H -0.275 1.275
13 S 2.682 3.318
14 O -0.944 6.944
15 O -0.976 6.976
16 C -0.636 4.636
17 C 0.028 3.972
18 C -0.171 4.171
19 C -0.130 4.130
20 C -0.079 4.079
21 C -0.116 4.116
22 C 0.077 3.923
23 C 0.192 3.808
24 N -0.236 5.236
25 N -0.036 5.036
26 N -0.233 5.233
27 H 0.474 0.526
28 N -0.287 5.287
29 H 0.193 0.807
30 H 0.107 0.893
31 H 0.068 0.932
32 H 0.267 0.733
33 H 0.133 0.867
34 H 0.058 0.942
35 H 0.095 0.905
36 H 0.133 0.867
37 H 0.132 0.868
38 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.928 -4.630 6.488 13.526
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.299 4.299
2 C -0.094 4.094
3 C 0.131 3.869
4 N -0.694 5.694
5 C -0.447 4.447
6 H 0.113 0.887
7 C -0.161 4.161
8 N -0.497 5.497
9 Si 0.738 3.262
10 H -0.199 1.199
11 H -0.210 1.210
12 H -0.200 1.200
13 S 2.771 3.229
14 O -0.931 6.931
15 O -0.966 6.966
16 C -0.720 4.720
17 C 0.027 3.973
18 C -0.227 4.227
19 C -0.149 4.149
20 C -0.097 4.097
21 C -0.137 4.137
22 C 0.073 3.927
23 C -0.088 4.088
24 N -0.110 5.110
25 N -0.032 5.032
26 N -0.078 5.078
27 H 0.328 0.672
28 N -0.138 5.138
29 H 0.211 0.789
30 H 0.125 0.875
31 H 0.086 0.914
32 H 0.079 0.921
33 H 0.150 0.850
34 H 0.077 0.923
35 H 0.113 0.887
36 H 0.150 0.850
37 H 0.149 0.851
38 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 9.669 -5.094 7.197 13.085
hybrid contribution 0.995 1.400 0.367 1.756
sum 10.663 -3.694 7.564 13.585
Atomic orbital electron populations
1.24072 0.95239 1.08209 1.02340 1.22998 0.94318 0.93774 0.98302
1.17819 0.84503 0.93570 0.91036 1.53172 1.77548 1.15483 1.23167
1.18832 1.22156 0.81116 1.22580 0.88689 1.25252 0.94486 0.98618
0.97774 1.69939 1.19800 1.35521 1.24439 0.86261 0.78228 0.83459
0.78242 1.19945 1.20981 1.20018 1.02637 0.73388 0.73401 0.73433
1.93496 1.72374 1.70870 1.56385 1.93466 1.82042 1.35203 1.85888
1.31362 1.29574 1.13053 0.97997 1.19755 0.92810 0.89610 0.95158
1.22291 1.01593 1.08850 0.89954 1.21353 0.95011 1.01082 0.97461
1.21206 0.99628 0.96271 0.92567 1.21071 0.91217 1.01439 0.99974
1.16553 0.91077 0.98115 0.86970 1.23851 0.90716 1.03013 0.91219
1.76252 1.07757 1.13946 1.13081 1.78935 1.14993 1.14341 0.94928
1.47719 1.01755 1.44836 1.13526 0.67195 1.74739 1.13156 1.20476
1.05474 0.78949 0.87528 0.91377 0.92099 0.84952 0.92266 0.88709
0.84956 0.85051 0.84729
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 41.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.28 -6.53 18.97 29.55 0.56 -5.97 16
2 C -0.09 -2.23 10.81 -37.12 -0.40 -2.64 16
3 C 0.26 5.79 3.17 -6.83 -0.02 5.77 16
4 N -0.86 -20.40 1.24 -62.78 -0.08 -20.48 16
5 C -0.32 -7.69 6.04 -15.06 -0.09 -7.78 16
6 H 0.10 2.24 7.68 -52.49 -0.40 1.84 16
7 C 0.05 1.10 5.18 -17.43 -0.09 1.01 16
8 N -0.86 -21.89 8.45 55.49 0.47 -21.42 16
9 Si 0.91 19.40 29.56 -169.99 -5.02 14.38 16
10 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16
11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16
13 S 2.68 64.64 3.60 -107.50 -0.39 64.25 16
14 O -0.94 -25.39 14.47 -57.17 -0.83 -26.22 16
15 O -0.98 -24.72 16.38 -57.17 -0.94 -25.66 16
16 C -0.64 -12.92 5.83 -39.26 -0.23 -13.15 16
17 C 0.03 0.48 5.86 -104.67 -0.61 -0.13 16
18 C -0.17 -2.88 7.85 36.01 0.28 -2.60 16
19 C -0.13 -1.78 9.67 -39.52 -0.38 -2.16 16
20 C -0.08 -0.98 10.03 -39.63 -0.40 -1.38 16
21 C -0.12 -1.69 9.70 -39.26 -0.38 -2.07 16
22 C 0.08 1.45 5.87 -104.89 -0.62 0.83 16
23 C 0.19 3.73 7.58 -156.31 -1.18 2.54 16
24 N -0.24 -5.18 7.76 32.15 0.25 -4.93 16
25 N -0.04 -0.64 13.47 60.35 0.81 0.18 16
26 N -0.23 -3.03 7.90 60.35 0.48 -2.56 16
27 H 0.47 3.19 8.96 -340.38 -3.05 0.14 16
28 N -0.29 -4.42 12.10 32.17 0.39 -4.03 16
29 H 0.19 3.78 7.80 -54.08 -0.42 3.36 16
30 H 0.11 2.32 6.98 -51.93 -0.36 1.96 16
31 H 0.07 1.40 6.69 -51.93 -0.35 1.05 16
32 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16
33 H 0.13 2.41 5.27 -51.93 -0.27 2.14 16
34 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16
35 H 0.09 1.73 3.06 -51.93 -0.16 1.57 16
36 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16
37 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16
38 H 0.13 1.61 7.90 -52.48 -0.41 1.19 16
LS Contribution 329.63 15.07 4.97 4.97
Total: -1.00 -34.85 329.63 -9.28 -44.14
By element:
Atomic # 1 Polarization: 10.92 SS G_CDS: -5.83 Total: 5.09 kcal
Atomic # 6 Polarization: -24.15 SS G_CDS: -3.56 Total: -27.71 kcal
Atomic # 7 Polarization: -55.55 SS G_CDS: 2.32 Total: -53.24 kcal
Atomic # 8 Polarization: -50.11 SS G_CDS: -1.76 Total: -51.88 kcal
Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal
Atomic # 16 Polarization: 64.64 SS G_CDS: -0.39 Total: 64.25 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -34.85 -9.28 -44.14 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001588350359.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 247.799 kcal
(2) G-P(sol) polarization free energy of solvation -34.854 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 212.945 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.139 kcal
(6) G-S(sol) free energy of system = (1) + (5) 203.660 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.58 seconds