Wall clock time and date at job start Wed Apr 1 2020 04:47:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17400 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46495 * 109.46803 * 237.91830 * 3 2 1
5 5 C 1.36935 * 120.00546 * 270.73331 * 4 3 2
6 6 H 1.08000 * 120.00771 * 205.63947 * 5 4 3
7 7 C 1.38815 * 119.99861 * 25.62942 * 5 4 3
8 8 N 1.31624 * 119.99750 * 6.96644 * 7 5 4
9 9 Si 1.86798 * 120.00226 * 186.95467 * 7 5 4
10 10 H 1.48509 * 109.46862 * 60.00676 * 9 7 5
11 11 H 1.48506 * 109.47134 * 180.02562 * 9 7 5
12 12 H 1.48495 * 109.47480 * 300.00828 * 9 7 5
13 13 S 1.65607 * 120.00177 * 90.73367 * 4 3 2
14 14 O 1.42094 * 106.40541 * 226.24540 * 13 4 3
15 15 O 1.42102 * 106.39776 * 359.16967 * 13 4 3
16 16 C 1.76202 * 107.21808 * 112.70418 * 13 4 3
17 17 C 1.38049 * 120.05938 * 341.76177 * 16 13 4
18 18 C 1.50705 * 119.94185 * 0.02562 * 17 16 13
19 19 C 1.38298 * 120.11492 * 179.76984 * 17 16 13
20 20 C 1.38339 * 120.23661 * 0.50597 * 19 17 16
21 21 C 1.38007 * 120.11439 * 359.75376 * 20 19 17
22 22 C 1.39279 * 120.05630 * 162.04204 * 16 13 4
23 23 C 1.48460 * 120.11962 * 359.97438 * 22 16 13
24 24 N 1.34046 * 126.67332 * 6.12247 * 23 22 16
25 25 N 1.28982 * 107.26756 * 179.83386 * 24 23 22
26 26 N 1.28727 * 108.94453 * 0.43248 * 25 24 23
27 27 H 0.96998 * 125.34324 * 179.74453 * 26 25 24
28 28 N 1.28873 * 109.31741 * 359.72589 * 26 25 24
29 29 H 4.40635 * 5.51374 * 180.02562 * 4 1 2
30 30 H 1.09000 * 109.46595 * 117.92567 * 3 2 1
31 31 H 1.08996 * 109.47715 * 357.92085 * 3 2 1
32 32 H 0.97000 * 119.99861 * 180.02562 * 8 7 5
33 33 H 1.09000 * 109.46976 * 85.28157 * 18 17 16
34 34 H 1.08995 * 109.46960 * 205.28178 * 18 17 16
35 35 H 1.08999 * 109.47122 * 325.28401 * 18 17 16
36 36 H 1.08000 * 119.87768 * 180.24118 * 19 17 16
37 37 H 1.07993 * 119.93791 * 179.76683 * 20 19 17
38 38 H 1.08003 * 120.05568 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1339 0.7345 1.1703
5 6 3.3472 2.0848 1.0918
6 1 4.0613 2.5579 1.7495
7 6 2.6457 2.8457 0.1667
8 7 1.6796 2.2973 -0.5392
9 14 3.0725 4.6480 -0.0762
10 1 4.4871 4.7672 -0.5127
11 1 2.1835 5.2319 -1.1125
12 1 2.8863 5.3777 1.2036
13 16 3.4276 -0.0690 2.5883
14 8 2.8365 0.7088 3.6201
15 8 3.0954 -1.4307 2.3540
16 6 5.1672 -0.0217 2.8640
17 6 6.0252 0.2627 1.8205
18 6 5.4727 0.5333 0.4448
19 6 7.3906 0.3048 2.0367
20 6 7.9047 0.0523 3.2959
21 6 7.0561 -0.2383 4.3448
22 6 5.6795 -0.2769 4.1338
23 6 4.7619 -0.5888 5.2584
24 7 3.4363 -0.7725 5.1827
25 7 3.0161 -1.0254 6.3756
26 7 4.0162 -0.9978 7.1856
27 1 3.9680 -1.1522 8.1420
28 7 5.0915 -0.7333 6.5264
29 1 -1.0501 -0.0003 -0.0001
30 1 3.0090 0.4821 -0.9080
31 1 3.0099 -1.0261 0.0373
32 1 1.1896 2.8288 -1.1859
33 1 5.1992 1.5853 0.3636
34 1 6.2287 0.2956 -0.3035
35 1 4.5906 -0.0852 0.2794
36 1 8.0581 0.5315 1.2184
37 1 8.9719 0.0828 3.4584
38 1 7.4585 -0.4348 5.3276
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001588350359.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:47:03
Heat of formation + Delta-G solvation = 178.282232 kcal
Electronic energy + Delta-G solvation = -29462.933755 eV
Core-core repulsion = 25439.364212 eV
Total energy + Delta-G solvation = -4023.569544 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 347.084 amu
Computer time = 1.77 seconds
Orbital eigenvalues (eV)
-45.63405 -40.44752 -38.49022 -37.76529 -36.55627 -35.56418 -34.98012 -33.65230
-33.47731 -32.54864 -31.85681 -28.24446 -27.79427 -26.13966 -25.76408 -25.37730
-23.62721 -22.08730 -20.55452 -20.19309 -19.69344 -18.82852 -18.31190 -18.22466
-17.89198 -17.09341 -16.54697 -16.42997 -15.93894 -15.74072 -15.34434 -15.18469
-15.08730 -14.69662 -14.29352 -14.03879 -13.56360 -13.51358 -13.29105 -13.18485
-12.92278 -12.87441 -12.73345 -12.64008 -12.57130 -12.45399 -12.33102 -12.21748
-12.03777 -11.83914 -11.80518 -11.54748 -11.08734 -10.69911 -10.38542 -10.22006
-9.76907 -9.60357 -7.92163 -5.80231 -0.60997 -0.23654 -0.00316 0.15879
1.15890 1.31040 1.52397 1.56111 1.61311 2.13488 2.43369 2.45091
2.57400 2.63805 2.85950 2.94219 3.05431 3.30474 3.78615 3.89550
4.03245 4.08303 4.10139 4.25828 4.32406 4.36548 4.52089 4.61282
4.76725 4.93258 5.01588 5.12024 5.14710 5.30083 5.35375 5.45031
5.53841 5.55542 5.71937 5.74794 5.94128 6.52857 6.92411 7.12410
7.37510 7.46613 8.97164
Molecular weight = 347.08amu
Principal moments of inertia in cm(-1)
A = 0.012402 B = 0.005524 C = 0.004719
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2257.223056 B = 5067.434975 C = 5932.549656
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.285 4.285
2 C -0.127 4.127
3 C 0.259 3.741
4 N -0.863 5.863
5 C -0.315 4.315
6 H 0.096 0.904
7 C 0.003 3.997
8 N -0.882 5.882
9 Si 0.969 3.031
10 H -0.250 1.250
11 H -0.288 1.288
12 H -0.287 1.287
13 S 2.676 3.324
14 O -0.992 6.992
15 O -1.010 7.010
16 C -0.660 4.660
17 C 0.014 3.986
18 C -0.171 4.171
19 C -0.120 4.120
20 C -0.056 4.056
21 C -0.107 4.107
22 C 0.045 3.955
23 C 0.169 3.831
24 N -0.296 5.296
25 N -0.053 5.053
26 N -0.192 5.192
27 H 0.499 0.501
28 N -0.263 5.263
29 H 0.222 0.778
30 H 0.112 0.888
31 H 0.080 0.920
32 H 0.264 0.736
33 H 0.117 0.883
34 H 0.096 0.904
35 H 0.073 0.927
36 H 0.175 0.825
37 H 0.188 0.812
38 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.019 -4.043 6.931 17.028
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.305 4.305
2 C -0.131 4.131
3 C 0.134 3.866
4 N -0.696 5.696
5 C -0.446 4.446
6 H 0.113 0.887
7 C -0.201 4.201
8 N -0.521 5.521
9 Si 0.794 3.206
10 H -0.174 1.174
11 H -0.214 1.214
12 H -0.214 1.214
13 S 2.774 3.226
14 O -0.980 6.980
15 O -1.000 7.000
16 C -0.750 4.750
17 C 0.013 3.987
18 C -0.227 4.227
19 C -0.139 4.139
20 C -0.074 4.074
21 C -0.128 4.128
22 C 0.041 3.959
23 C -0.111 4.111
24 N -0.169 5.169
25 N -0.049 5.049
26 N -0.044 5.044
27 H 0.359 0.641
28 N -0.117 5.117
29 H 0.239 0.761
30 H 0.129 0.871
31 H 0.097 0.903
32 H 0.075 0.925
33 H 0.135 0.865
34 H 0.114 0.886
35 H 0.091 0.909
36 H 0.192 0.808
37 H 0.205 0.795
38 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges 13.694 -4.539 7.660 16.334
hybrid contribution -0.135 1.174 0.392 1.245
sum 13.559 -3.365 8.052 16.125
Atomic orbital electron populations
1.24929 0.96400 1.07568 1.01581 1.23782 0.95652 0.94502 0.99114
1.17906 0.83680 0.94175 0.90878 1.53163 1.78309 1.15474 1.22669
1.19027 1.21734 0.81693 1.22175 0.88654 1.25949 0.94453 1.01919
0.97750 1.70089 1.20662 1.36459 1.24848 0.85375 0.79170 0.78893
0.77191 1.17387 1.21368 1.21352 1.02414 0.74878 0.72530 0.72817
1.93416 1.75082 1.71473 1.58008 1.93391 1.83744 1.36717 1.86120
1.30583 1.26499 1.17644 1.00263 1.19976 0.94461 0.90021 0.94245
1.22184 1.02068 1.07270 0.91171 1.21845 0.93511 0.99036 0.99510
1.21868 1.01978 0.92552 0.90959 1.21518 0.89358 0.99809 1.02139
1.16919 0.92941 0.99855 0.86213 1.24221 0.90306 1.03837 0.92686
1.76208 1.09661 1.16252 1.14778 1.78826 1.15950 1.15349 0.94777
1.47793 1.00508 1.41699 1.14427 0.64090 1.74678 1.13124 1.19773
1.04083 0.76081 0.87058 0.90252 0.92528 0.86522 0.88552 0.90858
0.80754 0.79527 0.81922
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 44.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.29 -13.76 18.97 74.32 1.41 -12.35 16
2 C -0.13 -6.53 10.81 31.13 0.34 -6.19 16
3 C 0.26 12.22 3.17 84.58 0.27 12.49 16
4 N -0.86 -42.58 1.24 -352.53 -0.44 -43.02 16
5 C -0.32 -15.70 6.04 84.03 0.51 -15.19 16
6 H 0.10 4.62 7.68 -2.91 -0.02 4.60 16
7 C 0.00 0.15 5.18 84.86 0.44 0.59 16
8 N -0.88 -45.95 8.45 21.65 0.18 -45.77 16
9 Si 0.97 39.89 29.56 68.60 2.03 41.92 16
10 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16
11 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16
12 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16
13 S 2.68 135.67 3.60 -56.49 -0.20 135.47 16
14 O -0.99 -56.85 14.47 -128.00 -1.85 -58.70 16
15 O -1.01 -54.53 16.38 -128.00 -2.10 -56.63 16
16 C -0.66 -26.98 5.83 22.48 0.13 -26.84 16
17 C 0.01 0.47 5.86 -19.89 -0.12 0.35 16
18 C -0.17 -5.59 7.85 71.24 0.56 -5.03 16
19 C -0.12 -2.71 9.67 22.31 0.22 -2.49 16
20 C -0.06 -1.07 10.03 22.24 0.22 -0.84 16
21 C -0.11 -2.72 9.70 22.48 0.22 -2.50 16
22 C 0.05 1.67 5.87 -20.04 -0.12 1.55 16
23 C 0.17 6.63 7.58 137.38 1.04 7.67 16
24 N -0.30 -13.56 7.76 -52.18 -0.40 -13.96 16
25 N -0.05 -1.96 13.47 37.02 0.50 -1.46 16
26 N -0.19 -4.85 7.90 37.02 0.29 -4.55 16
27 H 0.50 5.87 8.96 -347.55 -3.12 2.76 16
28 N -0.26 -7.80 12.10 -52.13 -0.63 -8.43 16
29 H 0.22 8.78 7.80 -4.41 -0.03 8.75 16
30 H 0.11 5.04 6.98 -2.39 -0.02 5.03 16
31 H 0.08 3.47 6.69 -2.39 -0.02 3.45 16
32 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16
33 H 0.12 4.19 5.27 -2.39 -0.01 4.18 16
34 H 0.10 2.31 8.05 -2.39 -0.02 2.29 16
35 H 0.07 2.73 3.06 -2.39 -0.01 2.72 16
36 H 0.18 2.48 8.06 -2.91 -0.02 2.45 16
37 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16
38 H 0.16 3.12 7.90 -2.91 -0.02 3.09 16
Total: -1.00 -82.37 329.63 0.53 -81.85
By element:
Atomic # 1 Polarization: 24.05 SS G_CDS: -1.96 Total: 22.09 kcal
Atomic # 6 Polarization: -53.92 SS G_CDS: 5.12 Total: -48.81 kcal
Atomic # 7 Polarization: -116.69 SS G_CDS: -0.50 Total: -117.19 kcal
Atomic # 8 Polarization: -111.38 SS G_CDS: -3.95 Total: -115.33 kcal
Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal
Atomic # 16 Polarization: 135.67 SS G_CDS: -0.20 Total: 135.47 kcal
Total: -82.37 0.53 -81.85 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001588350359.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 260.127 kcal
(2) G-P(sol) polarization free energy of solvation -82.374 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.753 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.845 kcal
(6) G-S(sol) free energy of system = (1) + (5) 178.282 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.77 seconds