Wall clock time and date at job start Wed Apr 1 2020 04:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99902 * 2 1 4 4 H 1.48503 * 109.47131 * 265.15050 * 3 2 1 5 5 H 1.48497 * 109.47214 * 25.14882 * 3 2 1 6 6 H 1.48499 * 109.47061 * 145.14896 * 3 2 1 7 7 C 1.37874 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00427 * 353.84843 * 7 2 1 9 9 C 1.50707 * 119.99570 * 173.85083 * 7 2 1 10 10 H 1.08998 * 109.47444 * 56.77853 * 9 7 2 11 11 N 1.46500 * 109.47053 * 296.77324 * 9 7 2 12 12 C 1.34775 * 119.99579 * 155.00319 * 11 9 7 13 13 O 1.21549 * 120.00489 * 359.97438 * 12 11 9 14 14 C 1.47863 * 119.99759 * 179.72392 * 12 11 9 15 15 C 1.39602 * 120.11692 * 359.97438 * 14 12 11 16 16 C 1.37963 * 119.96904 * 179.76292 * 15 14 12 17 17 C 1.38289 * 120.20172 * 0.51739 * 16 15 14 18 18 C 1.38810 * 120.24251 * 359.73377 * 17 16 15 19 19 O 1.35911 * 119.99131 * 179.97438 * 18 17 16 20 20 C 1.42900 * 116.99705 * 0.02723 * 19 18 17 21 21 C 1.50698 * 109.47486 * 179.97438 * 20 19 18 22 22 O 1.20834 * 119.99479 * 359.97438 * 21 20 19 23 23 O 1.34221 * 120.00373 * 180.02562 * 21 20 19 24 24 C 1.38503 * 120.02481 * 0.02562 * 18 17 16 25 25 C 1.53000 * 109.46837 * 176.77491 * 9 7 2 26 26 F 1.39901 * 109.47060 * 185.23669 * 25 9 7 27 27 F 1.39901 * 109.47325 * 305.23295 * 25 9 7 28 28 F 1.39903 * 109.47106 * 65.23570 * 25 9 7 29 29 H 0.96998 * 120.00170 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99661 * 335.00312 * 11 9 7 31 31 H 1.08008 * 120.01815 * 0.02562 * 15 14 12 32 32 H 1.07992 * 119.90299 * 180.25035 * 16 15 14 33 33 H 1.08007 * 119.88303 * 179.76354 * 17 16 15 34 34 H 1.09001 * 109.47361 * 299.99935 * 20 19 18 35 35 H 1.09007 * 109.46743 * 59.99609 * 20 19 18 36 36 H 0.96697 * 116.99744 * 180.02562 * 23 21 20 37 37 H 1.08003 * 120.09792 * 180.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5991 1.9873 -1.3951 5 1 1.3991 2.6801 0.5950 6 1 3.4916 1.4720 0.8001 7 6 2.0045 -1.1940 0.0005 8 1 1.4692 -2.1266 0.1012 9 6 3.5051 -1.1978 -0.1393 10 1 3.9452 -0.5901 0.6513 11 7 3.8753 -0.6443 -1.4442 12 6 5.0878 -0.0821 -1.6182 13 8 5.8739 -0.0338 -0.6924 14 6 5.4638 0.4711 -2.9369 15 6 4.5650 0.4118 -4.0035 16 6 4.9172 0.9332 -5.2312 17 6 6.1629 1.5057 -5.4125 18 6 7.0652 1.5645 -4.3593 19 8 8.2884 2.1277 -4.5433 20 6 8.5777 2.6393 -5.8459 21 6 9.9676 3.2214 -5.8597 22 8 10.6412 3.2007 -4.8568 23 8 10.4569 3.7638 -6.9858 24 6 6.7200 1.0484 -3.1213 25 6 4.0240 -2.6328 -0.0281 26 9 5.4230 -2.6249 -0.0381 27 9 3.5695 -3.2019 1.1663 28 9 3.5542 -3.3838 -1.1110 29 1 -0.4850 0.8400 -0.0004 30 1 3.2478 -0.6825 -2.1829 31 1 3.5928 -0.0383 -3.8664 32 1 4.2195 0.8905 -6.0545 33 1 6.4347 1.9089 -6.3769 34 1 8.5141 1.8322 -6.5757 35 1 7.8562 3.4161 -6.0995 36 1 11.3534 4.1241 -6.9459 37 1 7.4210 1.0939 -2.3009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605966.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:17 Heat of formation + Delta-G solvation = -284.552174 kcal Electronic energy + Delta-G solvation = -30383.794521 eV Core-core repulsion = 25290.959858 eV Total energy + Delta-G solvation = -5092.834663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.11697 -46.62639 -46.60348 -41.00959 -40.22952 -39.16230 -37.26602 -36.51641 -35.00483 -32.61466 -31.43188 -30.99539 -29.15319 -28.65375 -25.05211 -24.20552 -22.69747 -22.30717 -21.24944 -20.11927 -19.07227 -18.46010 -17.88641 -17.59566 -17.33207 -17.11363 -16.89587 -16.57401 -16.37662 -16.13347 -15.43414 -15.36937 -15.02145 -14.32660 -14.22540 -13.88280 -13.75187 -13.53709 -13.50220 -13.11095 -13.06808 -12.93300 -12.86004 -12.80047 -12.69985 -12.69101 -12.07206 -12.04799 -11.79956 -11.43711 -11.32217 -11.20074 -10.92607 -10.71008 -10.24063 -9.96326 -9.57932 -9.13961 -9.01643 -8.56157 -8.46168 -6.55396 -4.68974 0.78095 1.25986 1.65277 1.82456 2.97951 3.07106 3.17793 3.20776 3.28359 3.58804 3.79366 3.97416 4.08406 4.33040 4.44367 4.55469 4.62718 4.69738 4.84972 4.94357 5.01054 5.08544 5.16599 5.22609 5.32777 5.47965 5.79541 5.93995 6.00699 6.20993 6.29392 6.31916 6.45284 6.84477 6.97326 7.03316 7.35356 7.80159 8.15579 8.46996 8.66283 8.98594 10.52807 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.002941 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.061512 B = 9519.702354 C =10269.000874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.098 3.902 3 Si 0.871 3.129 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.538 4.538 8 H 0.097 0.903 9 C 0.202 3.798 10 H 0.094 0.906 11 N -0.708 5.708 12 C 0.540 3.460 13 O -0.529 6.529 14 C -0.086 4.086 15 C -0.116 4.116 16 C -0.086 4.086 17 C -0.191 4.191 18 C 0.115 3.885 19 O -0.294 6.294 20 C 0.069 3.931 21 C 0.481 3.519 22 O -0.488 6.488 23 O -0.513 6.513 24 C -0.087 4.087 25 C 0.443 3.557 26 F -0.193 7.193 27 F -0.183 7.183 28 F -0.189 7.189 29 H 0.275 0.725 30 H 0.402 0.598 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.419 0.581 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.019 5.761 -16.250 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.111 4.111 3 Si 0.697 3.303 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.181 1.181 7 C -0.576 4.576 8 H 0.115 0.885 9 C 0.099 3.901 10 H 0.111 0.889 11 N -0.361 5.361 12 C 0.327 3.673 13 O -0.407 6.407 14 C -0.090 4.090 15 C -0.135 4.135 16 C -0.104 4.104 17 C -0.210 4.210 18 C 0.070 3.930 19 O -0.208 6.208 20 C -0.008 4.008 21 C 0.321 3.679 22 O -0.373 6.373 23 O -0.326 6.326 24 C -0.106 4.106 25 C 0.388 3.612 26 F -0.174 7.174 27 F -0.164 7.164 28 F -0.171 7.171 29 H 0.085 0.915 30 H 0.240 0.760 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.280 0.720 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.342 5.711 -15.140 20.351 hybrid contribution 0.600 0.901 -0.617 1.246 sum 12.942 6.612 -15.757 21.436 Atomic orbital electron populations 1.69868 1.06344 1.28340 1.44819 1.24889 0.94753 0.99150 0.92332 0.86887 0.80719 0.82816 0.79897 1.19283 1.20980 1.18119 1.20795 0.86421 0.96641 1.53746 0.88544 1.20298 0.98934 0.85412 0.85503 0.88880 1.47481 1.15217 1.58108 1.15340 1.18504 0.82741 0.78651 0.87449 1.90765 1.50351 1.57417 1.42185 1.19982 0.94303 1.00079 0.94592 1.21417 0.99720 0.99896 0.92488 1.20874 0.95576 0.96642 0.97288 1.21363 0.95527 1.05621 0.98448 1.18714 0.83907 0.95864 0.94475 1.86094 1.31640 1.73248 1.29779 1.21793 0.91889 1.00722 0.86384 1.22645 0.88837 0.75586 0.80808 1.90815 1.59541 1.52587 1.34370 1.84421 1.38351 1.71479 1.38376 1.20480 0.96505 0.98025 0.95615 1.21417 0.74618 0.92032 0.73181 1.93155 1.30917 1.97127 1.96218 1.93112 1.88968 1.86906 1.47448 1.93085 1.88473 1.79474 1.56061 0.91467 0.76026 0.84692 0.84804 0.85070 0.87404 0.87428 0.72049 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.18 13.96 55.43 0.77 -22.41 16 2 C 0.10 2.51 5.46 -17.82 -0.10 2.41 16 3 Si 0.87 19.95 26.15 -169.99 -4.44 15.51 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -6.12 6.55 56.52 0.37 -5.75 16 7 C -0.54 -13.54 8.64 -34.44 -0.30 -13.84 16 8 H 0.10 2.64 7.91 -52.49 -0.42 2.22 16 9 C 0.20 4.60 1.41 -69.08 -0.10 4.50 16 10 H 0.09 2.26 6.28 -51.93 -0.33 1.93 16 11 N -0.71 -14.40 3.16 -55.87 -0.18 -14.58 16 12 C 0.54 10.88 7.17 -12.32 -0.09 10.80 16 13 O -0.53 -12.16 14.92 5.32 0.08 -12.08 16 14 C -0.09 -1.42 5.87 -104.99 -0.62 -2.04 16 15 C -0.12 -1.57 9.54 -39.17 -0.37 -1.94 16 16 C -0.09 -0.90 10.03 -39.66 -0.40 -1.30 16 17 C -0.19 -1.88 9.03 -39.35 -0.36 -2.24 16 18 C 0.11 1.45 6.68 -39.27 -0.26 1.19 16 19 O -0.29 -3.57 9.67 -39.41 -0.38 -3.95 16 20 C 0.07 0.51 5.33 36.00 0.19 0.70 16 21 C 0.48 4.09 8.40 36.00 0.30 4.40 16 22 O -0.49 -6.37 17.26 -25.48 -0.44 -6.81 16 23 O -0.51 -2.59 13.42 -39.23 -0.53 -3.11 16 24 C -0.09 -1.35 9.53 -39.02 -0.37 -1.72 16 25 C 0.44 9.73 2.79 37.16 0.10 9.83 16 26 F -0.19 -4.23 15.84 2.25 0.04 -4.20 16 27 F -0.18 -4.05 16.83 2.25 0.04 -4.01 16 28 F -0.19 -4.01 16.97 2.25 0.04 -3.98 16 29 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.40 7.38 6.62 -40.82 -0.27 7.11 16 31 H 0.14 1.68 6.40 -52.48 -0.34 1.35 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.13 0.80 6.28 -52.48 -0.33 0.47 16 34 H 0.11 0.51 7.66 -51.93 -0.40 0.12 16 35 H 0.11 0.53 7.66 -51.93 -0.40 0.13 16 36 H 0.42 0.45 9.10 45.56 0.41 0.87 16 37 H 0.15 2.42 7.65 -52.48 -0.40 2.02 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -33.34 340.76 -4.28 -37.62 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -2.05 Total: 6.12 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: -2.36 Total: 10.75 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.60 Total: -36.99 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -1.27 Total: -25.95 kcal Atomic # 9 Polarization: -12.29 SS G_CDS: 0.11 Total: -12.18 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.44 Total: 15.51 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.34 -4.28 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605966.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -246.933 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -284.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds