Wall clock time and date at job start Wed Apr 1 2020 04:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99902 * 2 1 4 4 H 1.48503 * 109.47131 * 265.15050 * 3 2 1 5 5 H 1.48497 * 109.47214 * 25.14882 * 3 2 1 6 6 H 1.48499 * 109.47061 * 145.14896 * 3 2 1 7 7 C 1.37874 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00427 * 353.84843 * 7 2 1 9 9 C 1.50707 * 119.99570 * 173.85083 * 7 2 1 10 10 H 1.08998 * 109.47444 * 56.77853 * 9 7 2 11 11 N 1.46500 * 109.47053 * 296.77324 * 9 7 2 12 12 C 1.34775 * 119.99579 * 155.00319 * 11 9 7 13 13 O 1.21549 * 120.00489 * 359.97438 * 12 11 9 14 14 C 1.47863 * 119.99759 * 179.72392 * 12 11 9 15 15 C 1.39602 * 120.11692 * 359.97438 * 14 12 11 16 16 C 1.37963 * 119.96904 * 179.76292 * 15 14 12 17 17 C 1.38289 * 120.20172 * 0.51739 * 16 15 14 18 18 C 1.38810 * 120.24251 * 359.73377 * 17 16 15 19 19 O 1.35911 * 119.99131 * 179.97438 * 18 17 16 20 20 C 1.42900 * 116.99705 * 0.02723 * 19 18 17 21 21 C 1.50698 * 109.47486 * 179.97438 * 20 19 18 22 22 O 1.20834 * 119.99479 * 359.97438 * 21 20 19 23 23 O 1.34221 * 120.00373 * 180.02562 * 21 20 19 24 24 C 1.38503 * 120.02481 * 0.02562 * 18 17 16 25 25 C 1.53000 * 109.46837 * 176.77491 * 9 7 2 26 26 F 1.39901 * 109.47060 * 185.23669 * 25 9 7 27 27 F 1.39901 * 109.47325 * 305.23295 * 25 9 7 28 28 F 1.39903 * 109.47106 * 65.23570 * 25 9 7 29 29 H 0.96998 * 120.00170 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99661 * 335.00312 * 11 9 7 31 31 H 1.08008 * 120.01815 * 0.02562 * 15 14 12 32 32 H 1.07992 * 119.90299 * 180.25035 * 16 15 14 33 33 H 1.08007 * 119.88303 * 179.76354 * 17 16 15 34 34 H 1.09001 * 109.47361 * 299.99935 * 20 19 18 35 35 H 1.09007 * 109.46743 * 59.99609 * 20 19 18 36 36 H 0.96697 * 116.99744 * 180.02562 * 23 21 20 37 37 H 1.08003 * 120.09792 * 180.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5991 1.9873 -1.3951 5 1 1.3991 2.6801 0.5950 6 1 3.4916 1.4720 0.8001 7 6 2.0045 -1.1940 0.0005 8 1 1.4692 -2.1266 0.1012 9 6 3.5051 -1.1978 -0.1393 10 1 3.9452 -0.5901 0.6513 11 7 3.8753 -0.6443 -1.4442 12 6 5.0878 -0.0821 -1.6182 13 8 5.8739 -0.0338 -0.6924 14 6 5.4638 0.4711 -2.9369 15 6 4.5650 0.4118 -4.0035 16 6 4.9172 0.9332 -5.2312 17 6 6.1629 1.5057 -5.4125 18 6 7.0652 1.5645 -4.3593 19 8 8.2884 2.1277 -4.5433 20 6 8.5777 2.6393 -5.8459 21 6 9.9676 3.2214 -5.8597 22 8 10.6412 3.2007 -4.8568 23 8 10.4569 3.7638 -6.9858 24 6 6.7200 1.0484 -3.1213 25 6 4.0240 -2.6328 -0.0281 26 9 5.4230 -2.6249 -0.0381 27 9 3.5695 -3.2019 1.1663 28 9 3.5542 -3.3838 -1.1110 29 1 -0.4850 0.8400 -0.0004 30 1 3.2478 -0.6825 -2.1829 31 1 3.5928 -0.0383 -3.8664 32 1 4.2195 0.8905 -6.0545 33 1 6.4347 1.9089 -6.3769 34 1 8.5141 1.8322 -6.5757 35 1 7.8562 3.4161 -6.0995 36 1 11.3534 4.1241 -6.9459 37 1 7.4210 1.0939 -2.3009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605966.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:17 Heat of formation + Delta-G solvation = -308.361318 kcal Electronic energy + Delta-G solvation = -30384.826963 eV Core-core repulsion = 25290.959858 eV Total energy + Delta-G solvation = -5093.867105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.92783 -48.43992 -48.40350 -41.79722 -41.22899 -40.38409 -38.24656 -37.14490 -36.78999 -34.50989 -32.51903 -32.03928 -30.46889 -29.60855 -26.98032 -25.36272 -23.67077 -23.28329 -22.71190 -21.42888 -20.34717 -19.68905 -19.38602 -18.99364 -18.64977 -18.39880 -18.02707 -17.73530 -17.61540 -17.23543 -16.84959 -16.16208 -16.10592 -15.89904 -15.75664 -15.32925 -15.31084 -14.87780 -14.84210 -14.79396 -14.60952 -14.58114 -14.53332 -14.50009 -13.79785 -13.75575 -13.57263 -13.02932 -12.89517 -12.69018 -12.58145 -12.26806 -12.19687 -12.12344 -11.92073 -11.64924 -11.22773 -10.96504 -10.34183 -10.06646 -9.39555 -8.55425 -6.72521 -0.28751 0.31855 1.05007 1.20572 1.24570 1.31044 1.41988 1.66295 1.90878 2.09609 2.16487 2.61461 2.75691 2.92463 3.13034 3.32131 3.41906 3.68536 3.70841 3.95976 4.03879 4.04179 4.10456 4.15577 4.30807 4.41326 4.55777 4.83280 4.91135 5.11336 5.23784 5.27536 5.33531 5.48184 5.57105 5.85950 6.21135 6.40676 6.53238 6.87811 6.97646 7.09109 8.56929 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.002941 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.061512 B = 9519.702354 C =10269.000874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.245 1.245 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.209 3.791 10 H 0.076 0.924 11 N -0.705 5.705 12 C 0.538 3.462 13 O -0.568 6.568 14 C -0.114 4.114 15 C -0.123 4.123 16 C -0.073 4.073 17 C -0.165 4.165 18 C 0.117 3.883 19 O -0.323 6.323 20 C 0.057 3.943 21 C 0.488 3.512 22 O -0.547 6.547 23 O -0.498 6.498 24 C -0.114 4.114 25 C 0.446 3.554 26 F -0.192 7.192 27 F -0.185 7.185 28 F -0.183 7.183 29 H 0.281 0.719 30 H 0.413 0.587 31 H 0.141 0.859 32 H 0.178 0.822 33 H 0.183 0.817 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.436 0.564 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.234 7.226 -20.421 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.136 4.136 3 Si 0.741 3.259 4 H -0.169 1.169 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.087 0.913 9 C 0.104 3.896 10 H 0.094 0.906 11 N -0.359 5.359 12 C 0.327 3.673 13 O -0.449 6.449 14 C -0.117 4.117 15 C -0.142 4.142 16 C -0.090 4.090 17 C -0.183 4.183 18 C 0.073 3.927 19 O -0.237 6.237 20 C -0.018 4.018 21 C 0.331 3.669 22 O -0.436 6.436 23 O -0.313 6.313 24 C -0.134 4.134 25 C 0.391 3.609 26 F -0.173 7.173 27 F -0.166 7.166 28 F -0.164 7.164 29 H 0.091 0.909 30 H 0.252 0.748 31 H 0.159 0.841 32 H 0.195 0.805 33 H 0.200 0.800 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.300 0.700 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.557 7.190 -19.382 24.188 hybrid contribution 0.653 0.457 0.534 0.960 sum 13.210 7.647 -18.848 24.253 Atomic orbital electron populations 1.69924 1.07448 1.29362 1.46316 1.25329 0.95095 1.01261 0.91950 0.86182 0.78754 0.80180 0.80793 1.16886 1.20463 1.20213 1.20698 0.87356 0.95669 1.54095 0.91285 1.19929 0.97394 0.85846 0.86386 0.90591 1.47065 1.15979 1.58333 1.14544 1.19084 0.81755 0.77674 0.88779 1.90732 1.51281 1.58881 1.43979 1.19642 0.95822 1.02825 0.93393 1.21612 0.99371 1.00281 0.92950 1.21367 0.96372 0.94418 0.96853 1.21903 0.94075 1.03038 0.99319 1.18662 0.84720 0.95348 0.94008 1.86054 1.31433 1.73350 1.32898 1.22289 0.91772 1.02815 0.84891 1.22979 0.89019 0.74462 0.80456 1.90809 1.61167 1.55160 1.36513 1.84390 1.39717 1.70655 1.36495 1.20349 0.96097 1.00137 0.96771 1.21264 0.74598 0.91773 0.73300 1.93158 1.30847 1.97115 1.96226 1.93106 1.89000 1.86899 1.47617 1.93092 1.88401 1.79243 1.55701 0.90905 0.74753 0.84110 0.80511 0.79964 0.83851 0.83976 0.70024 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.59 13.96 21.45 0.30 -48.29 16 2 C 0.07 3.62 5.46 84.65 0.46 4.08 16 3 Si 0.92 41.23 26.15 68.60 1.79 43.03 16 4 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.28 -13.32 6.55 99.48 0.65 -12.67 16 7 C -0.54 -27.77 8.64 25.60 0.22 -27.54 16 8 H 0.07 3.90 7.91 -2.91 -0.02 3.87 16 9 C 0.21 9.75 1.41 44.25 0.06 9.82 16 10 H 0.08 3.83 6.28 -2.39 -0.01 3.82 16 11 N -0.71 -28.90 3.16 -448.96 -1.42 -30.32 16 12 C 0.54 22.10 7.17 86.79 0.62 22.72 16 13 O -0.57 -27.27 14.92 -3.87 -0.06 -27.32 16 14 C -0.11 -3.70 5.87 -20.10 -0.12 -3.82 16 15 C -0.12 -2.98 9.54 22.53 0.21 -2.76 16 16 C -0.07 -1.13 10.03 22.22 0.22 -0.91 16 17 C -0.17 -2.33 9.03 22.42 0.20 -2.13 16 18 C 0.12 2.66 6.68 22.47 0.15 2.81 16 19 O -0.32 -7.18 9.67 -73.47 -0.71 -7.89 16 20 C 0.06 0.60 5.33 71.24 0.38 0.98 16 21 C 0.49 7.14 8.40 71.24 0.60 7.74 16 22 O -0.55 -14.08 17.26 28.37 0.49 -13.60 16 23 O -0.50 -3.39 13.42 -51.33 -0.69 -4.08 16 24 C -0.11 -3.56 9.53 22.63 0.22 -3.34 16 25 C 0.45 19.96 2.79 71.98 0.20 20.16 16 26 F -0.19 -8.61 15.84 44.97 0.71 -7.90 16 27 F -0.18 -8.35 16.83 44.97 0.76 -7.59 16 28 F -0.18 -7.78 16.97 44.97 0.76 -7.02 16 29 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.41 14.99 6.62 -92.71 -0.61 14.37 16 31 H 0.14 3.14 6.40 -2.91 -0.02 3.12 16 32 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.18 0.71 6.28 -2.91 -0.02 0.69 16 34 H 0.14 0.51 7.66 -2.39 -0.02 0.49 16 35 H 0.14 0.54 7.66 -2.38 -0.02 0.52 16 36 H 0.44 -0.21 9.10 -74.06 -0.67 -0.88 16 37 H 0.12 4.22 7.65 -2.91 -0.02 4.20 16 Total: -1.00 -77.12 340.76 5.22 -71.90 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -0.15 Total: 11.28 kcal Atomic # 6 Polarization: 24.38 SS G_CDS: 3.44 Total: 27.81 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -1.12 Total: -78.61 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -0.97 Total: -52.89 kcal Atomic # 9 Polarization: -24.74 SS G_CDS: 2.23 Total: -22.51 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.79 Total: 43.03 kcal Total: -77.12 5.22 -71.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605966.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.465 kcal (2) G-P(sol) polarization free energy of solvation -77.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -313.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -308.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds