Wall clock time and date at job start Wed Apr 1 2020 04:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 11 11 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 12 12 C 1.34771 * 120.00694 * 204.99997 * 11 9 7 13 13 O 1.21593 * 119.99630 * 0.02562 * 12 11 9 14 14 C 1.47607 * 120.00478 * 180.02562 * 12 11 9 15 15 C 1.39727 * 120.08329 * 359.72556 * 14 12 11 16 16 C 1.37711 * 119.90505 * 179.75990 * 15 14 12 17 17 C 1.38989 * 120.09031 * 0.49795 * 16 15 14 18 18 O 1.35710 * 119.91256 * 179.73558 * 17 16 15 19 19 C 1.42892 * 117.00180 * 0.02562 * 18 17 16 20 20 C 1.50701 * 109.47440 * 179.97438 * 19 18 17 21 21 O 1.20825 * 119.99814 * 359.97438 * 20 19 18 22 22 O 1.34226 * 120.00181 * 179.97438 * 20 19 18 23 23 C 1.38995 * 120.17533 * 359.76038 * 17 16 15 24 24 C 1.37702 * 120.09347 * 359.97438 * 23 17 16 25 25 C 1.52998 * 109.47419 * 300.27906 * 9 7 2 26 26 F 1.39901 * 109.47038 * 60.00272 * 25 9 7 27 27 F 1.39903 * 109.47186 * 179.97438 * 25 9 7 28 28 F 1.39898 * 109.47149 * 299.99974 * 25 9 7 29 29 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99940 * 25.01079 * 11 9 7 31 31 H 1.07994 * 120.04843 * 0.02562 * 15 14 12 32 32 H 1.08004 * 119.95218 * 180.20806 * 16 15 14 33 33 H 1.09007 * 109.47241 * 299.99901 * 19 18 17 34 34 H 1.09001 * 109.47389 * 59.99519 * 19 18 17 35 35 H 0.96698 * 117.00459 * 180.02562 * 22 20 19 36 36 H 1.08002 * 119.95613 * 179.97438 * 23 17 16 37 37 H 1.07993 * 120.05143 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6244 -2.5609 -0.8844 11 7 2.2032 -3.6125 0.0102 12 6 1.8371 -4.8144 -0.4776 13 8 0.7168 -4.9744 -0.9222 14 6 2.7962 -5.9364 -0.4722 15 6 4.0860 -5.7529 0.0330 16 6 4.9762 -6.8036 0.0408 17 6 4.5966 -8.0423 -0.4625 18 8 5.4785 -9.0738 -0.4579 19 6 6.7771 -8.8146 0.0790 20 6 7.6118 -10.0670 0.0017 21 8 7.1426 -11.0779 -0.4650 22 8 8.8766 -10.0594 0.4512 23 6 3.3162 -8.2273 -0.9708 24 6 2.4183 -7.1833 -0.9773 25 6 0.3716 -2.5746 1.2550 26 9 -0.5376 -1.5114 1.2503 27 9 -0.3282 -3.7860 1.2602 28 9 1.1760 -2.4954 2.3969 29 1 -0.4850 0.8400 0.0004 30 1 3.0971 -3.4849 0.3647 31 1 4.3829 -4.7897 0.4207 32 1 5.9722 -6.6635 0.4342 33 1 7.2564 -8.0220 -0.4957 34 1 6.6846 -8.5037 1.1197 35 1 9.3727 -10.8863 0.3802 36 1 3.0251 -9.1913 -1.3614 37 1 1.4239 -7.3277 -1.3728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:24 Heat of formation + Delta-G solvation = -265.641014 kcal Electronic energy + Delta-G solvation = -30075.539241 eV Core-core repulsion = 24983.524628 eV Total energy + Delta-G solvation = -5092.014614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.37064 -46.02651 -45.63342 -41.06417 -40.22684 -39.10589 -37.18981 -36.54819 -34.75286 -32.73880 -31.44821 -30.71063 -29.44218 -27.98723 -24.62908 -23.73997 -23.33497 -22.03391 -21.22283 -19.98928 -19.09879 -18.32264 -17.79686 -17.40797 -17.16630 -16.89105 -16.72800 -16.61944 -15.94388 -15.49997 -15.43422 -15.07527 -14.86299 -14.32003 -14.03676 -13.91775 -13.69808 -13.31893 -13.01884 -12.94684 -12.83978 -12.58561 -12.43215 -12.35990 -12.28130 -12.09819 -12.00603 -11.83999 -11.43476 -11.23846 -11.19515 -10.93398 -10.89803 -10.81949 -10.44744 -9.72250 -9.39134 -9.22048 -8.75777 -8.51214 -8.26225 -6.26866 -4.51632 0.88100 1.19256 1.60258 1.78187 3.08272 3.17355 3.18996 3.22304 3.23737 3.72382 3.97094 4.18068 4.30379 4.41602 4.53285 4.54840 4.62272 4.66513 4.89816 5.03551 5.12163 5.28406 5.45891 5.79223 5.81630 5.84509 5.89753 5.94195 6.08571 6.17929 6.35378 6.45982 6.89639 6.96009 7.10448 7.30664 7.42046 7.59063 8.24543 8.44984 8.80014 9.16229 10.64495 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.002417 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.871103 B =11581.260700 C =12410.116973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.245 3.755 10 H 0.087 0.913 11 N -0.706 5.706 12 C 0.550 3.450 13 O -0.533 6.533 14 C -0.155 4.155 15 C -0.044 4.044 16 C -0.217 4.217 17 C 0.142 3.858 18 O -0.294 6.294 19 C 0.067 3.933 20 C 0.483 3.517 21 O -0.491 6.491 22 O -0.511 6.511 23 C -0.153 4.153 24 C -0.021 4.021 25 C 0.417 3.583 26 F -0.136 7.136 27 F -0.217 7.217 28 F -0.209 7.209 29 H 0.269 0.731 30 H 0.397 0.603 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.420 0.580 36 H 0.138 0.862 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.023 -13.862 1.246 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.591 4.591 8 H 0.095 0.905 9 C 0.140 3.860 10 H 0.104 0.896 11 N -0.356 5.356 12 C 0.336 3.664 13 O -0.410 6.410 14 C -0.158 4.158 15 C -0.063 4.063 16 C -0.235 4.235 17 C 0.097 3.903 18 O -0.207 6.207 19 C -0.010 4.010 20 C 0.323 3.677 21 O -0.377 6.377 22 O -0.325 6.325 23 C -0.171 4.171 24 C -0.040 4.040 25 C 0.361 3.639 26 F -0.117 7.117 27 F -0.199 7.199 28 F -0.191 7.191 29 H 0.080 0.920 30 H 0.232 0.768 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.280 0.720 36 H 0.156 0.844 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.611 -13.939 0.778 19.497 hybrid contribution 1.194 0.531 0.618 1.445 sum 14.805 -13.408 1.396 20.022 Atomic orbital electron populations 1.70389 1.05865 1.27549 1.43335 1.25081 0.95163 1.00134 0.94013 0.86266 0.79345 0.81294 0.78904 1.19756 1.20849 1.19819 1.20821 0.93721 0.88086 1.56460 0.90496 1.19751 0.88726 0.85716 0.91832 0.89552 1.46005 1.17177 1.10373 1.62037 1.18175 0.87072 0.82696 0.78450 1.90782 1.20770 1.83076 1.46421 1.20115 0.94900 0.95409 1.05390 1.21188 0.91884 0.98629 0.94600 1.21132 1.01593 0.92856 1.07952 1.19149 0.89508 0.86044 0.95598 1.86021 1.21032 1.35497 1.78196 1.21842 0.82961 0.93665 1.02512 1.22642 0.80728 0.89769 0.74562 1.90797 1.71959 1.34330 1.40594 1.84432 1.25649 1.44957 1.77445 1.20382 0.90811 1.00808 1.05125 1.21141 0.99453 0.90161 0.93229 1.23131 0.80900 0.72846 0.87069 1.93410 1.68379 1.53760 1.96172 1.93074 1.81449 1.48406 1.96978 1.92986 1.74416 1.96161 1.55569 0.91995 0.76805 0.84744 0.84816 0.87169 0.87180 0.72017 0.84378 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.64 9.49 55.43 0.53 -22.12 16 2 C 0.07 1.66 5.20 -17.82 -0.09 1.57 16 3 Si 0.92 19.65 29.54 -169.99 -5.02 14.63 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.55 -13.78 8.47 -34.44 -0.29 -14.07 16 8 H 0.08 1.78 7.74 -52.49 -0.41 1.37 16 9 C 0.25 5.98 2.21 -69.08 -0.15 5.82 16 10 H 0.09 2.36 7.58 -51.93 -0.39 1.97 16 11 N -0.71 -14.11 4.93 -55.95 -0.28 -14.38 16 12 C 0.55 10.77 7.30 -12.44 -0.09 10.68 16 13 O -0.53 -12.34 14.91 5.28 0.08 -12.26 16 14 C -0.15 -2.34 5.87 -104.96 -0.62 -2.96 16 15 C -0.04 -0.53 9.53 -39.22 -0.37 -0.90 16 16 C -0.22 -2.12 9.01 -39.50 -0.36 -2.47 16 17 C 0.14 1.55 6.70 -39.02 -0.26 1.28 16 18 O -0.29 -3.05 9.66 -38.79 -0.37 -3.43 16 19 C 0.07 0.43 5.32 36.01 0.19 0.62 16 20 C 0.48 3.65 8.40 36.01 0.30 3.96 16 21 O -0.49 -5.77 17.26 -25.48 -0.44 -6.21 16 22 O -0.51 -2.30 13.42 -39.25 -0.53 -2.82 16 23 C -0.15 -1.78 9.97 -39.50 -0.39 -2.18 16 24 C -0.02 -0.29 9.59 -39.22 -0.38 -0.66 16 25 C 0.42 10.57 2.81 37.16 0.10 10.67 16 26 F -0.14 -3.73 12.90 2.25 0.03 -3.70 16 27 F -0.22 -5.49 15.68 2.25 0.04 -5.46 16 28 F -0.21 -5.09 16.94 2.25 0.04 -5.05 16 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.40 6.68 6.56 -40.82 -0.27 6.42 16 31 H 0.13 1.39 6.39 -52.49 -0.34 1.05 16 32 H 0.13 0.85 6.28 -52.48 -0.33 0.52 16 33 H 0.11 0.47 7.65 -51.93 -0.40 0.07 16 34 H 0.11 0.47 7.65 -51.93 -0.40 0.08 16 35 H 0.42 0.20 9.10 45.56 0.41 0.62 16 36 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.15 1.99 7.64 -52.49 -0.40 1.59 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -34.18 339.39 -5.29 -39.47 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -2.07 Total: 4.83 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -2.41 Total: 11.37 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.25 Total: -36.50 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -1.26 Total: -24.71 kcal Atomic # 9 Polarization: -14.31 SS G_CDS: 0.10 Total: -14.21 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.18 -5.29 -39.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.170 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds