Wall clock time and date at job start Wed Apr 1 2020 04:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 11 11 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 12 12 C 1.34771 * 120.00694 * 204.99997 * 11 9 7 13 13 O 1.21593 * 119.99630 * 0.02562 * 12 11 9 14 14 C 1.47607 * 120.00478 * 180.02562 * 12 11 9 15 15 C 1.39727 * 120.08329 * 359.72556 * 14 12 11 16 16 C 1.37711 * 119.90505 * 179.75990 * 15 14 12 17 17 C 1.38989 * 120.09031 * 0.49795 * 16 15 14 18 18 O 1.35710 * 119.91256 * 179.73558 * 17 16 15 19 19 C 1.42892 * 117.00180 * 0.02562 * 18 17 16 20 20 C 1.50701 * 109.47440 * 179.97438 * 19 18 17 21 21 O 1.20825 * 119.99814 * 359.97438 * 20 19 18 22 22 O 1.34226 * 120.00181 * 179.97438 * 20 19 18 23 23 C 1.38995 * 120.17533 * 359.76038 * 17 16 15 24 24 C 1.37702 * 120.09347 * 359.97438 * 23 17 16 25 25 C 1.52998 * 109.47419 * 300.27906 * 9 7 2 26 26 F 1.39901 * 109.47038 * 60.00272 * 25 9 7 27 27 F 1.39903 * 109.47186 * 179.97438 * 25 9 7 28 28 F 1.39898 * 109.47149 * 299.99974 * 25 9 7 29 29 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99940 * 25.01079 * 11 9 7 31 31 H 1.07994 * 120.04843 * 0.02562 * 15 14 12 32 32 H 1.08004 * 119.95218 * 180.20806 * 16 15 14 33 33 H 1.09007 * 109.47241 * 299.99901 * 19 18 17 34 34 H 1.09001 * 109.47389 * 59.99519 * 19 18 17 35 35 H 0.96698 * 117.00459 * 180.02562 * 22 20 19 36 36 H 1.08002 * 119.95613 * 179.97438 * 23 17 16 37 37 H 1.07993 * 120.05143 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6244 -2.5609 -0.8844 11 7 2.2032 -3.6125 0.0102 12 6 1.8371 -4.8144 -0.4776 13 8 0.7168 -4.9744 -0.9222 14 6 2.7962 -5.9364 -0.4722 15 6 4.0860 -5.7529 0.0330 16 6 4.9762 -6.8036 0.0408 17 6 4.5966 -8.0423 -0.4625 18 8 5.4785 -9.0738 -0.4579 19 6 6.7771 -8.8146 0.0790 20 6 7.6118 -10.0670 0.0017 21 8 7.1426 -11.0779 -0.4650 22 8 8.8766 -10.0594 0.4512 23 6 3.3162 -8.2273 -0.9708 24 6 2.4183 -7.1833 -0.9773 25 6 0.3716 -2.5746 1.2550 26 9 -0.5376 -1.5114 1.2503 27 9 -0.3282 -3.7860 1.2602 28 9 1.1760 -2.4954 2.3969 29 1 -0.4850 0.8400 0.0004 30 1 3.0971 -3.4849 0.3647 31 1 4.3829 -4.7897 0.4207 32 1 5.9722 -6.6635 0.4342 33 1 7.2564 -8.0220 -0.4957 34 1 6.6846 -8.5037 1.1197 35 1 9.3727 -10.8863 0.3802 36 1 3.0251 -9.1913 -1.3614 37 1 1.4239 -7.3277 -1.3728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:24 Heat of formation + Delta-G solvation = -289.744723 kcal Electronic energy + Delta-G solvation = -30076.584457 eV Core-core repulsion = 24983.524628 eV Total energy + Delta-G solvation = -5093.059829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.41754 -48.05460 -47.72477 -41.76705 -41.12471 -40.31750 -38.16550 -37.11586 -36.53120 -34.53556 -32.44200 -31.69954 -30.47521 -29.35074 -26.59564 -24.93932 -24.15651 -23.32911 -22.30992 -21.48755 -19.88065 -19.55383 -18.89966 -18.77806 -18.65265 -18.38423 -18.04473 -17.72142 -17.48550 -16.90704 -16.48953 -16.16184 -16.09666 -15.71444 -15.39078 -15.01852 -14.96608 -14.69509 -14.64258 -14.47112 -14.33657 -14.24437 -14.02520 -13.86827 -13.80640 -13.60926 -13.40919 -13.03497 -12.77063 -12.65136 -12.59254 -12.21853 -12.15693 -12.03608 -11.62251 -11.58121 -10.98075 -10.66529 -10.12668 -10.11611 -9.34981 -8.19963 -6.51564 -0.15193 0.30580 1.07461 1.25410 1.48701 1.51046 1.59525 1.82465 2.16740 2.40337 2.53025 2.61625 2.83556 2.96002 3.64179 3.68511 3.81707 3.86453 3.89764 3.99822 4.05645 4.17710 4.18909 4.22919 4.40238 4.55732 4.86965 4.96235 5.04737 5.17611 5.36128 5.38529 5.50141 5.55466 5.59244 5.65103 6.18745 6.52614 6.69851 6.90191 7.16955 7.32007 8.72463 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.002417 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.871103 B =11581.260700 C =12410.116973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.562 4.562 8 H 0.096 0.904 9 C 0.252 3.748 10 H 0.047 0.953 11 N -0.700 5.700 12 C 0.546 3.454 13 O -0.581 6.581 14 C -0.184 4.184 15 C -0.038 4.038 16 C -0.202 4.202 17 C 0.155 3.845 18 O -0.311 6.311 19 C 0.054 3.946 20 C 0.490 3.510 21 O -0.543 6.543 22 O -0.500 6.500 23 C -0.159 4.159 24 C -0.029 4.029 25 C 0.413 3.587 26 F -0.150 7.150 27 F -0.220 7.220 28 F -0.202 7.202 29 H 0.268 0.732 30 H 0.413 0.587 31 H 0.153 0.847 32 H 0.180 0.820 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.437 0.563 36 H 0.149 0.851 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.958 -13.807 2.182 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.598 4.598 8 H 0.114 0.886 9 C 0.145 3.855 10 H 0.064 0.936 11 N -0.351 5.351 12 C 0.336 3.664 13 O -0.462 6.462 14 C -0.187 4.187 15 C -0.057 4.057 16 C -0.220 4.220 17 C 0.110 3.890 18 O -0.225 6.225 19 C -0.021 4.021 20 C 0.333 3.667 21 O -0.433 6.433 22 O -0.315 6.315 23 C -0.178 4.178 24 C -0.048 4.048 25 C 0.357 3.643 26 F -0.131 7.131 27 F -0.202 7.202 28 F -0.184 7.184 29 H 0.078 0.922 30 H 0.251 0.749 31 H 0.170 0.830 32 H 0.197 0.803 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.300 0.700 36 H 0.166 0.834 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 17.629 -13.908 1.737 22.522 hybrid contribution 0.104 0.353 0.355 0.511 sum 17.733 -13.555 2.092 22.418 Atomic orbital electron populations 1.70533 1.07582 1.28245 1.44551 1.26028 0.95888 1.03799 0.93437 0.85195 0.77975 0.76601 0.79469 1.18592 1.21252 1.18813 1.21204 0.94649 0.88131 1.55858 0.88611 1.19340 0.88958 0.87484 0.89750 0.93554 1.45819 1.17195 1.09636 1.62435 1.18909 0.87281 0.83300 0.76915 1.90745 1.23150 1.83839 1.48454 1.19815 0.95654 0.94071 1.09166 1.21380 0.90556 1.00173 0.93555 1.21505 1.02925 0.91220 1.06333 1.19200 0.89135 0.86612 0.94093 1.86004 1.22610 1.35562 1.78295 1.22305 0.81183 0.93900 1.04673 1.22896 0.81242 0.89371 0.73212 1.90793 1.73123 1.36222 1.43195 1.84401 1.24421 1.46221 1.76430 1.20457 0.91332 1.00597 1.05382 1.21056 0.99526 0.90493 0.93729 1.23321 0.80878 0.72351 0.87761 1.93381 1.68982 1.54478 1.96293 1.93064 1.81613 1.48514 1.97031 1.92984 1.74082 1.96117 1.55185 0.92172 0.74868 0.82980 0.80283 0.84033 0.84122 0.69982 0.83352 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.22 9.49 21.45 0.20 -48.02 16 2 C 0.01 0.70 5.20 84.65 0.44 1.14 16 3 Si 0.98 39.55 29.54 68.60 2.03 41.58 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.29 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.56 -27.75 8.47 25.60 0.22 -27.53 16 8 H 0.10 4.25 7.74 -2.91 -0.02 4.23 16 9 C 0.25 12.56 2.21 44.24 0.10 12.66 16 10 H 0.05 2.69 7.58 -2.38 -0.02 2.67 16 11 N -0.70 -28.07 4.93 -449.19 -2.22 -30.29 16 12 C 0.55 21.98 7.30 86.72 0.63 22.61 16 13 O -0.58 -28.44 14.91 -4.01 -0.06 -28.50 16 14 C -0.18 -5.49 5.87 -20.08 -0.12 -5.61 16 15 C -0.04 -0.80 9.53 22.50 0.21 -0.58 16 16 C -0.20 -3.04 9.01 22.33 0.20 -2.84 16 17 C 0.16 2.90 6.70 22.63 0.15 3.05 16 18 O -0.31 -5.45 9.66 -71.23 -0.69 -6.14 16 19 C 0.05 0.46 5.32 71.24 0.38 0.84 16 20 C 0.49 6.00 8.40 71.24 0.60 6.60 16 21 O -0.54 -12.04 17.26 28.40 0.49 -11.55 16 22 O -0.50 -2.78 13.42 -51.38 -0.69 -3.47 16 23 C -0.16 -3.54 9.97 22.32 0.22 -3.32 16 24 C -0.03 -0.80 9.59 22.51 0.22 -0.58 16 25 C 0.41 21.42 2.81 71.98 0.20 21.62 16 26 F -0.15 -8.47 12.90 44.97 0.58 -7.89 16 27 F -0.22 -11.51 15.68 44.97 0.70 -10.81 16 28 F -0.20 -9.77 16.94 44.97 0.76 -9.01 16 29 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 30 H 0.41 13.37 6.56 -92.70 -0.61 12.76 16 31 H 0.15 2.59 6.39 -2.91 -0.02 2.57 16 32 H 0.18 1.05 6.28 -2.91 -0.02 1.03 16 33 H 0.14 0.38 7.65 -2.38 -0.02 0.36 16 34 H 0.14 0.40 7.65 -2.39 -0.02 0.38 16 35 H 0.44 -0.82 9.10 -74.06 -0.67 -1.50 16 36 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.13 3.88 7.64 -2.91 -0.02 3.86 16 Total: -1.00 -77.57 339.39 4.48 -73.09 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -0.09 Total: 12.95 kcal Atomic # 6 Polarization: 24.61 SS G_CDS: 3.45 Total: 28.06 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -2.01 Total: -78.31 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.95 Total: -49.66 kcal Atomic # 9 Polarization: -29.76 SS G_CDS: 2.05 Total: -27.71 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -77.57 4.48 -73.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.654 kcal (2) G-P(sol) polarization free energy of solvation -77.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -294.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -289.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds