Wall clock time and date at job start Wed Apr 1 2020 04:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34753 * 116.99645 * 2 1 4 4 O 1.21509 * 120.00435 * 0.02562 * 3 2 1 5 5 C 1.47413 * 119.99914 * 180.02562 * 3 2 1 6 6 C 1.40403 * 120.48230 * 179.97438 * 5 3 2 7 7 C 1.36835 * 118.48846 * 179.74554 * 6 5 3 8 8 C 1.39409 * 119.38202 * 0.52084 * 7 6 5 9 9 N 1.38435 * 119.53212 * 179.74427 * 8 7 6 10 10 N 1.40102 * 119.99807 * 179.73066 * 9 8 7 11 11 C 1.34777 * 119.99698 * 180.02562 * 10 9 8 12 12 O 1.21763 * 119.99961 * 359.97438 * 11 10 9 13 13 C 1.46239 * 119.99914 * 179.97438 * 11 10 9 14 14 S 1.75665 * 125.22658 * 0.02562 * 13 11 10 15 15 C 1.75474 * 92.09119 * 179.97438 * 14 13 11 16 16 C 1.32765 * 111.36028 * 0.02562 * 15 14 13 17 17 C 1.39546 * 125.22610 * 180.02562 * 13 11 10 18 18 C 1.40536 * 123.71639 * 359.97438 * 17 13 11 19 19 H 1.07997 * 120.00321 * 335.10350 * 18 17 13 20 20 C 1.40305 * 119.99966 * 155.10172 * 18 17 13 21 21 N 1.30641 * 120.00394 * 162.49382 * 20 18 17 22 22 Si 1.86803 * 119.99957 * 342.49186 * 20 18 17 23 23 H 1.48498 * 109.47257 * 94.03071 * 22 20 18 24 24 H 1.48500 * 109.46963 * 214.02790 * 22 20 18 25 25 H 1.48500 * 109.46899 * 334.02687 * 22 20 18 26 26 N 1.32619 * 120.93664 * 359.47009 * 8 7 6 27 27 C 1.31655 * 121.63860 * 0.27223 * 26 8 7 28 28 H 1.09000 * 109.46722 * 299.99381 * 1 2 3 29 29 H 1.08999 * 109.47091 * 60.00004 * 1 2 3 30 30 H 1.09006 * 109.46847 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.75498 * 0.02562 * 6 5 3 32 32 H 1.08004 * 120.30561 * 180.28445 * 7 6 5 33 33 H 0.96998 * 120.00038 * 359.72753 * 9 8 7 34 34 H 0.96998 * 120.00154 * 359.97438 * 10 9 8 35 35 H 1.07997 * 124.32262 * 179.73281 * 15 14 13 36 36 H 1.08000 * 122.78443 * 179.97438 * 16 15 14 37 37 H 0.96994 * 120.00271 * 180.02562 * 21 20 18 38 38 H 1.08007 * 119.74247 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5358 1.2779 -0.0006 6 6 4.1837 2.5235 -0.0011 7 6 5.5518 2.5476 0.0037 8 6 6.2571 1.3451 -0.0021 9 7 7.6413 1.3659 -0.0026 10 7 8.3599 0.1632 -0.0027 11 6 9.7075 0.1835 -0.0026 12 8 10.3004 1.2470 -0.0030 13 6 10.4577 -1.0719 -0.0022 14 16 9.7456 -2.6777 -0.0022 15 6 11.3227 -3.4471 -0.0022 16 6 12.2994 -2.5478 -0.0017 17 6 11.8491 -1.1781 -0.0016 18 6 12.7159 -0.0719 -0.0019 19 1 12.3814 0.8762 -0.3963 20 6 14.0159 -0.1992 0.5102 21 7 14.9254 0.6902 0.2124 22 14 14.4464 -1.6404 1.6180 23 1 15.0200 -2.7392 0.8002 24 1 15.4415 -1.2059 2.6311 25 1 13.2200 -2.1215 2.3033 26 7 5.6208 0.1815 -0.0016 27 6 4.3060 0.1134 -0.0011 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.6151 3.4418 -0.0007 32 1 6.0803 3.4895 0.0081 33 1 8.1136 2.2131 -0.0029 34 1 7.8876 -0.6840 -0.0020 35 1 11.4790 -4.5157 0.0019 36 1 13.3446 -2.8197 -0.0012 37 1 15.8242 0.6019 0.5661 38 1 3.8195 -0.8509 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598148090.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:47 Heat of formation + Delta-G solvation = -17.503960 kcal Electronic energy + Delta-G solvation = -26020.583984 eV Core-core repulsion = 21956.231763 eV Total energy + Delta-G solvation = -4064.352221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.88437 -39.90612 -38.60195 -36.66921 -36.48752 -35.33336 -33.51737 -32.64986 -32.17831 -29.88058 -29.10826 -27.67149 -26.43336 -24.25163 -23.55306 -22.15195 -21.28496 -20.92374 -19.35633 -18.69979 -18.27451 -17.44606 -17.13525 -16.74384 -16.50416 -15.96423 -15.62610 -15.22330 -14.83605 -14.76093 -14.39001 -13.95482 -13.89099 -13.78193 -13.41013 -13.33844 -13.26428 -12.82511 -12.57402 -12.35118 -12.25434 -11.78653 -11.52954 -11.44470 -11.05458 -11.00592 -10.80768 -10.58355 -10.15141 -10.12742 -9.75575 -9.64935 -9.56418 -9.27157 -8.89134 -7.87491 -7.50600 -7.34749 -7.30478 -4.73399 0.60936 1.20487 1.73221 2.23276 2.46647 2.55161 2.72916 2.77337 2.96361 2.99971 3.31863 3.35887 3.64965 3.74644 3.91648 4.14889 4.61415 4.69096 4.75435 4.87239 4.90948 4.94355 4.95099 5.19017 5.27349 5.53847 5.65266 5.81416 5.89893 5.96016 6.22160 6.23492 6.42524 6.59337 6.75792 6.85595 7.05540 7.42999 7.47185 7.62161 7.97513 8.08238 8.18224 8.25263 8.56252 9.26374 9.62159 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.002228 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.945977 B =12563.939996 C =13586.819532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.524 3.476 4 O -0.521 6.521 5 C -0.269 4.269 6 C 0.038 3.962 7 C -0.249 4.249 8 C 0.438 3.562 9 N -0.486 5.486 10 N -0.542 5.542 11 C 0.598 3.402 12 O -0.558 6.558 13 C -0.426 4.426 14 S -0.012 6.012 15 C -0.170 4.170 16 C -0.166 4.166 17 C 0.111 3.889 18 C -0.352 4.352 19 H 0.124 0.876 20 C 0.075 3.925 21 N -0.760 5.760 22 Si 0.911 3.089 23 H -0.263 1.263 24 H -0.280 1.280 25 H -0.239 1.239 26 N -0.557 5.557 27 C 0.228 3.772 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.443 0.557 34 H 0.425 0.575 35 H 0.147 0.853 36 H 0.128 0.872 37 H 0.295 0.705 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.527 -3.125 0.705 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.370 3.630 4 O -0.411 6.411 5 C -0.277 4.277 6 C 0.013 3.987 7 C -0.276 4.276 8 C 0.198 3.802 9 N -0.205 5.205 10 N -0.292 5.292 11 C 0.397 3.603 12 O -0.439 6.439 13 C -0.547 4.547 14 S 0.244 5.756 15 C -0.305 4.305 16 C -0.199 4.199 17 C 0.100 3.900 18 C -0.381 4.381 19 H 0.142 0.858 20 C -0.151 4.151 21 N -0.382 5.382 22 Si 0.736 3.264 23 H -0.189 1.189 24 H -0.207 1.207 25 H -0.162 1.162 26 N -0.277 5.277 27 C 0.066 3.934 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.288 0.712 34 H 0.267 0.733 35 H 0.164 0.836 36 H 0.145 0.855 37 H 0.106 0.894 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -16.802 -3.344 0.695 17.145 hybrid contribution 1.081 0.630 0.392 1.311 sum -15.721 -2.714 1.087 15.991 Atomic orbital electron populations 1.23245 0.76155 1.03641 1.02502 1.86542 1.23422 1.32858 1.84656 1.20839 0.88673 0.81256 0.72206 1.90816 1.66855 1.36026 1.47381 1.19590 0.89909 0.95899 1.22308 1.20975 0.93101 0.97129 0.87508 1.20826 0.94353 0.97568 1.14804 1.18561 0.83561 0.90259 0.87859 1.43325 0.99670 1.02826 1.74686 1.45197 1.04181 0.98924 1.80882 1.16953 0.77939 0.89097 0.76340 1.90724 1.67797 1.31287 1.54140 1.21926 0.94676 0.90886 1.47175 1.82967 1.08838 1.00685 1.83094 1.24982 0.96265 1.01724 1.07523 1.21448 0.99015 0.93541 1.05930 1.17813 0.90533 0.91105 0.90516 1.19902 0.92793 0.99106 1.26330 0.85835 1.26612 0.95342 0.97586 0.95511 1.69580 1.03904 1.32764 1.31922 0.86401 0.80007 0.80030 0.79959 1.18898 1.20680 1.16160 1.67284 1.10846 1.26141 1.23391 1.22833 0.87395 0.97950 0.85223 0.91942 0.91948 0.88048 0.83640 0.83912 0.71233 0.73297 0.83575 0.85510 0.89380 0.81234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.36 -3.61 9.83 -40.64 -0.40 -4.01 16 3 C 0.52 6.26 7.89 34.47 0.27 6.53 16 4 O -0.52 -7.29 16.20 -19.27 -0.31 -7.60 16 5 C -0.27 -3.15 5.89 -104.83 -0.62 -3.77 16 6 C 0.04 0.42 9.65 -39.28 -0.38 0.04 16 7 C -0.25 -2.83 9.86 -39.65 -0.39 -3.22 16 8 C 0.44 6.19 7.58 -155.28 -1.18 5.01 16 9 N -0.49 -7.85 6.39 31.11 0.20 -7.65 16 10 N -0.54 -10.34 6.28 30.17 0.19 -10.15 16 11 C 0.60 13.80 7.88 -13.05 -0.10 13.70 16 12 O -0.56 -14.35 14.31 5.13 0.07 -14.28 16 13 C -0.43 -9.95 6.51 -35.88 -0.23 -10.18 16 14 S -0.01 -0.24 22.25 -107.50 -2.39 -2.63 16 15 C -0.17 -3.20 11.07 28.86 0.32 -2.88 16 16 C -0.17 -3.53 7.55 -39.12 -0.30 -3.82 16 17 C 0.11 2.71 5.27 -106.21 -0.56 2.16 16 18 C -0.35 -9.21 9.00 -37.94 -0.34 -9.55 16 19 H 0.12 3.61 6.29 -52.49 -0.33 3.28 16 20 C 0.08 1.82 5.48 -17.28 -0.09 1.72 16 21 N -0.76 -18.54 13.92 55.57 0.77 -17.77 16 22 Si 0.91 18.33 24.53 -169.99 -4.17 14.16 16 23 H -0.26 -4.91 6.64 56.52 0.38 -4.54 16 24 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.24 -4.95 6.73 56.52 0.38 -4.57 16 26 N -0.56 -7.92 9.33 -12.13 -0.11 -8.03 16 27 C 0.23 2.69 10.79 -17.11 -0.18 2.51 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.15 1.39 7.73 -52.49 -0.41 0.99 16 32 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.44 6.80 7.98 -182.60 -1.46 5.34 16 34 H 0.43 7.75 7.01 -182.60 -1.28 6.47 16 35 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.13 2.53 4.56 -52.49 -0.24 2.29 16 37 H 0.30 6.33 8.29 -40.82 -0.34 5.99 16 38 H 0.17 1.58 7.61 -52.48 -0.40 1.18 16 LS Contribution 348.47 15.07 5.25 5.25 Total: -1.00 -30.07 348.47 -9.02 -39.09 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -5.41 Total: 14.04 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.72 Total: -0.43 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 1.05 Total: -43.60 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.64 Total: -25.88 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -4.17 Total: 14.16 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.39 Total: -2.63 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.07 -9.02 -39.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598148090.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.586 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds