Wall clock time and date at job start Wed Apr 1 2020 04:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34753 * 116.99645 * 2 1 4 4 O 1.21509 * 120.00435 * 0.02562 * 3 2 1 5 5 C 1.47413 * 119.99914 * 180.02562 * 3 2 1 6 6 C 1.40403 * 120.48230 * 179.97438 * 5 3 2 7 7 C 1.36835 * 118.48846 * 179.74554 * 6 5 3 8 8 C 1.39409 * 119.38202 * 0.52084 * 7 6 5 9 9 N 1.38435 * 119.53212 * 179.74427 * 8 7 6 10 10 N 1.40102 * 119.99807 * 179.73066 * 9 8 7 11 11 C 1.34777 * 119.99698 * 180.02562 * 10 9 8 12 12 O 1.21763 * 119.99961 * 359.97438 * 11 10 9 13 13 C 1.46239 * 119.99914 * 179.97438 * 11 10 9 14 14 S 1.75665 * 125.22658 * 0.02562 * 13 11 10 15 15 C 1.75474 * 92.09119 * 179.97438 * 14 13 11 16 16 C 1.32765 * 111.36028 * 0.02562 * 15 14 13 17 17 C 1.39546 * 125.22610 * 180.02562 * 13 11 10 18 18 C 1.40536 * 123.71639 * 359.97438 * 17 13 11 19 19 H 1.07997 * 120.00321 * 335.10350 * 18 17 13 20 20 C 1.40305 * 119.99966 * 155.10172 * 18 17 13 21 21 N 1.30641 * 120.00394 * 162.49382 * 20 18 17 22 22 Si 1.86803 * 119.99957 * 342.49186 * 20 18 17 23 23 H 1.48498 * 109.47257 * 94.03071 * 22 20 18 24 24 H 1.48500 * 109.46963 * 214.02790 * 22 20 18 25 25 H 1.48500 * 109.46899 * 334.02687 * 22 20 18 26 26 N 1.32619 * 120.93664 * 359.47009 * 8 7 6 27 27 C 1.31655 * 121.63860 * 0.27223 * 26 8 7 28 28 H 1.09000 * 109.46722 * 299.99381 * 1 2 3 29 29 H 1.08999 * 109.47091 * 60.00004 * 1 2 3 30 30 H 1.09006 * 109.46847 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.75498 * 0.02562 * 6 5 3 32 32 H 1.08004 * 120.30561 * 180.28445 * 7 6 5 33 33 H 0.96998 * 120.00038 * 359.72753 * 9 8 7 34 34 H 0.96998 * 120.00154 * 359.97438 * 10 9 8 35 35 H 1.07997 * 124.32262 * 179.73281 * 15 14 13 36 36 H 1.08000 * 122.78443 * 179.97438 * 16 15 14 37 37 H 0.96994 * 120.00271 * 180.02562 * 21 20 18 38 38 H 1.08007 * 119.74247 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5358 1.2779 -0.0006 6 6 4.1837 2.5235 -0.0011 7 6 5.5518 2.5476 0.0037 8 6 6.2571 1.3451 -0.0021 9 7 7.6413 1.3659 -0.0026 10 7 8.3599 0.1632 -0.0027 11 6 9.7075 0.1835 -0.0026 12 8 10.3004 1.2470 -0.0030 13 6 10.4577 -1.0719 -0.0022 14 16 9.7456 -2.6777 -0.0022 15 6 11.3227 -3.4471 -0.0022 16 6 12.2994 -2.5478 -0.0017 17 6 11.8491 -1.1781 -0.0016 18 6 12.7159 -0.0719 -0.0019 19 1 12.3814 0.8762 -0.3963 20 6 14.0159 -0.1992 0.5102 21 7 14.9254 0.6902 0.2124 22 14 14.4464 -1.6404 1.6180 23 1 15.0200 -2.7392 0.8002 24 1 15.4415 -1.2059 2.6311 25 1 13.2200 -2.1215 2.3033 26 7 5.6208 0.1815 -0.0016 27 6 4.3060 0.1134 -0.0011 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.6151 3.4418 -0.0007 32 1 6.0803 3.4895 0.0081 33 1 8.1136 2.2131 -0.0029 34 1 7.8876 -0.6840 -0.0020 35 1 11.4790 -4.5157 0.0019 36 1 13.3446 -2.8197 -0.0012 37 1 15.8242 0.6019 0.5661 38 1 3.8195 -0.8509 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598148090.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:46 Heat of formation + Delta-G solvation = -37.305828 kcal Electronic energy + Delta-G solvation = -26021.442657 eV Core-core repulsion = 21956.231763 eV Total energy + Delta-G solvation = -4065.210895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87408 -40.96651 -40.18182 -38.20077 -37.47409 -36.80978 -35.26281 -33.64688 -33.52942 -31.29715 -30.53719 -28.60354 -27.92138 -25.24916 -24.71719 -23.70071 -22.48410 -22.24519 -20.97274 -20.21556 -19.31236 -18.62962 -18.38201 -17.99611 -17.50020 -17.34111 -17.13949 -16.50000 -16.16673 -16.03419 -15.50281 -15.40038 -15.27377 -15.07155 -14.89604 -14.34320 -14.25067 -14.17889 -13.90424 -13.71953 -13.39818 -13.08966 -12.97678 -12.85951 -12.71395 -12.27966 -11.79943 -11.76336 -11.76046 -11.39487 -11.20420 -11.11073 -10.77280 -10.61857 -10.55657 -9.56740 -9.14238 -9.09575 -8.61727 -6.56536 -0.40075 0.07632 0.26141 0.89741 1.18187 1.19054 1.35881 1.44409 1.49181 1.59537 1.68506 1.74805 2.04858 2.34433 2.75027 2.77868 3.12962 3.66151 3.71594 3.85095 3.92265 4.11933 4.24026 4.36355 4.39761 4.41595 4.64919 4.69720 4.76075 4.87587 4.91238 5.03972 5.16531 5.25570 5.33317 5.35217 5.64648 5.80498 6.08551 6.20927 6.42815 6.51832 6.69619 6.73279 6.92087 7.56497 7.94689 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.002228 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.945977 B =12563.939996 C =13586.819532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.528 3.472 4 O -0.543 6.543 5 C -0.265 4.265 6 C 0.040 3.960 7 C -0.238 4.238 8 C 0.422 3.578 9 N -0.499 5.499 10 N -0.531 5.531 11 C 0.591 3.409 12 O -0.596 6.596 13 C -0.457 4.457 14 S 0.044 5.956 15 C -0.147 4.147 16 C -0.198 4.198 17 C 0.102 3.898 18 C -0.401 4.401 19 H 0.071 0.929 20 C 0.040 3.960 21 N -0.805 5.805 22 Si 0.971 3.029 23 H -0.232 1.232 24 H -0.271 1.271 25 H -0.247 1.247 26 N -0.577 5.577 27 C 0.226 3.774 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.133 0.867 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.443 0.557 34 H 0.430 0.570 35 H 0.197 0.803 36 H 0.141 0.859 37 H 0.306 0.694 38 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.728 -6.105 1.316 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.274 6.274 3 C 0.374 3.626 4 O -0.435 6.435 5 C -0.272 4.272 6 C 0.014 3.986 7 C -0.263 4.263 8 C 0.185 3.815 9 N -0.223 5.223 10 N -0.279 5.279 11 C 0.388 3.612 12 O -0.480 6.480 13 C -0.577 4.577 14 S 0.302 5.698 15 C -0.282 4.282 16 C -0.231 4.231 17 C 0.091 3.909 18 C -0.431 4.431 19 H 0.089 0.911 20 C -0.182 4.182 21 N -0.428 5.428 22 Si 0.791 3.209 23 H -0.156 1.156 24 H -0.197 1.197 25 H -0.171 1.171 26 N -0.296 5.296 27 C 0.065 3.935 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.151 0.849 31 H 0.181 0.819 32 H 0.184 0.816 33 H 0.288 0.712 34 H 0.272 0.728 35 H 0.214 0.786 36 H 0.159 0.841 37 H 0.117 0.883 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -19.104 -6.352 1.286 20.173 hybrid contribution 1.266 1.561 0.147 2.015 sum -17.838 -4.791 1.433 18.526 Atomic orbital electron populations 1.23573 0.74269 1.05837 1.02586 1.86531 1.25238 1.31655 1.84022 1.20823 0.88608 0.81497 0.71626 1.90812 1.67311 1.36884 1.48491 1.19781 0.90188 0.96241 1.20983 1.21232 0.92935 0.97756 0.86636 1.21046 0.94448 0.97593 1.13251 1.18827 0.82692 0.91367 0.88656 1.43368 1.00230 1.01412 1.77246 1.44751 1.03303 1.00494 1.79343 1.17134 0.79171 0.88782 0.76106 1.90704 1.68971 1.32668 1.55661 1.22498 0.95502 0.93693 1.46017 1.82688 1.08443 0.96979 1.81709 1.25594 0.95086 1.03858 1.03622 1.21420 1.00513 0.92064 1.09071 1.18166 0.90881 0.92504 0.89391 1.19676 0.94982 0.98101 1.30343 0.91088 1.27401 0.94346 1.00306 0.96100 1.69601 1.04742 1.34796 1.33667 0.85518 0.79536 0.77510 0.78356 1.15579 1.19664 1.17060 1.67251 1.11994 1.26569 1.23828 1.23172 0.86548 0.99073 0.84703 0.91886 0.91895 0.84868 0.81865 0.81602 0.71245 0.72756 0.78592 0.84147 0.88264 0.78926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 113.37 1.20 1.55 16 2 O -0.36 -6.34 9.83 -56.64 -0.56 -6.90 16 3 C 0.53 11.52 7.89 70.24 0.55 12.08 16 4 O -0.54 -14.25 16.20 19.81 0.32 -13.92 16 5 C -0.26 -5.67 5.89 -20.00 -0.12 -5.78 16 6 C 0.04 0.79 9.65 22.47 0.22 1.01 16 7 C -0.24 -5.06 9.86 22.22 0.22 -4.84 16 8 C 0.42 11.67 7.58 133.26 1.01 12.68 16 9 N -0.50 -16.46 6.39 -55.50 -0.35 -16.81 16 10 N -0.53 -20.65 6.28 -176.66 -1.11 -21.75 16 11 C 0.59 28.41 7.88 86.32 0.68 29.09 16 12 O -0.60 -32.91 14.31 -4.55 -0.07 -32.97 16 13 C -0.46 -21.64 6.51 24.67 0.16 -21.48 16 14 S 0.04 1.60 22.25 -56.49 -1.26 0.34 16 15 C -0.15 -4.96 11.07 66.64 0.74 -4.22 16 16 C -0.20 -8.06 7.55 22.60 0.17 -7.89 16 17 C 0.10 5.09 5.27 -20.89 -0.11 4.98 16 18 C -0.40 -22.44 9.00 23.33 0.21 -22.23 16 19 H 0.07 4.60 6.29 -2.91 -0.02 4.58 16 20 C 0.04 2.00 5.48 85.37 0.47 2.47 16 21 N -0.80 -41.47 13.92 21.89 0.30 -41.16 16 22 Si 0.97 37.49 24.53 68.60 1.68 39.17 16 23 H -0.23 -7.72 6.64 99.48 0.66 -7.06 16 24 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 25 H -0.25 -9.79 6.73 99.48 0.67 -9.12 16 26 N -0.58 -15.71 9.33 -192.28 -1.79 -17.50 16 27 C 0.23 4.89 10.79 85.05 0.92 5.81 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.16 2.73 7.73 -2.91 -0.02 2.71 16 32 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.44 14.24 7.98 -213.32 -1.70 12.53 16 34 H 0.43 15.54 7.01 -213.32 -1.49 14.05 16 35 H 0.20 4.64 8.06 -2.91 -0.02 4.61 16 36 H 0.14 5.26 4.56 -2.91 -0.01 5.25 16 37 H 0.31 13.69 8.29 -92.71 -0.77 12.92 16 38 H 0.19 3.11 7.61 -2.91 -0.02 3.09 16 Total: -1.00 -70.51 348.47 1.37 -69.13 By element: Atomic # 1 Polarization: 41.28 SS G_CDS: -2.11 Total: 39.17 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 6.31 Total: 3.21 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -2.95 Total: -97.23 kcal Atomic # 8 Polarization: -53.50 SS G_CDS: -0.30 Total: -53.80 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 1.68 Total: 39.17 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.26 Total: 0.34 kcal Total: -70.51 1.37 -69.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598148090.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.828 kcal (2) G-P(sol) polarization free energy of solvation -70.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds