Wall clock time and date at job start Wed Apr 1 2020 04:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38349 * 127.15124 * 2 1 4 4 C 1.39776 * 126.56539 * 359.97438 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78826 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.78076 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87149 * 179.73605 * 3 2 1 13 13 N 1.28516 * 109.74574 * 0.25995 * 12 3 2 14 14 C 1.32389 * 110.20242 * 359.97438 * 13 12 3 15 15 S 1.76204 * 126.25914 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99786 * 0.03042 * 15 14 13 17 17 C 1.50701 * 109.47130 * 180.02562 * 16 15 14 18 18 O 1.21259 * 119.99865 * 359.97438 * 17 16 15 19 19 C 1.47182 * 120.00418 * 180.02562 * 17 16 15 20 20 C 1.39984 * 120.09679 * 359.71915 * 19 17 16 21 21 C 1.37993 * 120.12720 * 179.72163 * 20 19 17 22 22 C 1.38130 * 120.33325 * 0.55797 * 21 20 19 23 23 C 1.39762 * 120.19205 * 359.71947 * 22 21 20 24 24 C 1.47741 * 120.06306 * 180.02562 * 23 22 21 25 25 O 1.21470 * 120.00083 * 179.97438 * 24 23 22 26 26 O 1.34709 * 119.99886 * 359.97438 * 24 23 22 27 27 C 1.39318 * 119.86864 * 0.02562 * 23 22 21 28 28 H 1.09000 * 109.46642 * 90.00171 * 1 2 3 29 29 H 1.08991 * 109.47275 * 210.00238 * 1 2 3 30 30 H 1.08996 * 109.46979 * 330.00798 * 1 2 3 31 31 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 32 32 H 1.09008 * 109.47151 * 299.99549 * 16 15 14 33 33 H 1.08994 * 109.47580 * 59.99790 * 16 15 14 34 34 H 1.08000 * 119.93814 * 359.97438 * 20 19 17 35 35 H 1.07999 * 119.83108 * 180.27438 * 21 20 19 36 36 H 1.07999 * 119.90500 * 179.69738 * 22 21 20 37 37 H 0.96702 * 116.99751 * 180.02562 * 26 24 23 38 38 H 1.07998 * 120.16371 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8640 2.7018 0.0934 6 6 2.8709 3.4551 -0.1226 7 7 2.5140 4.7110 -0.0421 8 14 4.6635 3.0094 -0.4007 9 1 5.4732 4.2506 -0.4956 10 1 5.1506 2.1857 0.7349 11 1 4.7916 2.2376 -1.6629 12 7 3.5490 0.6414 0.0059 13 7 3.5371 -0.6437 0.0039 14 6 2.2904 -1.0893 -0.0027 15 16 1.7874 -2.7780 -0.0083 16 6 3.4059 -3.5881 -0.0013 17 6 3.2192 -5.0835 -0.0056 18 8 2.1021 -5.5550 -0.0121 19 6 4.3928 -5.9718 -0.0006 20 6 5.6834 -5.4297 0.0021 21 6 6.7841 -6.2619 0.0125 22 6 6.6217 -7.6336 0.0088 23 6 5.3394 -8.1895 0.0003 24 6 5.1689 -9.6570 -0.0031 25 8 4.0539 -10.1389 -0.0100 26 8 6.2500 -10.4607 0.0014 27 6 4.2223 -7.3570 -0.0050 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.5753 4.9451 0.0271 32 1 3.9654 -3.2897 -0.8880 33 1 3.9563 -3.2928 0.8919 34 1 5.8180 -4.3581 0.0001 35 1 7.7777 -5.8385 0.0190 36 1 7.4880 -8.2784 0.0121 37 1 6.0883 -11.4141 -0.0015 38 1 3.2292 -7.7814 -0.0111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600912322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:45 Heat of formation + Delta-G solvation = -39.400738 kcal Electronic energy + Delta-G solvation = -25802.538696 eV Core-core repulsion = 21737.236959 eV Total energy + Delta-G solvation = -4065.301737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.00045 -40.96410 -39.98670 -38.36140 -36.55291 -33.99296 -33.63414 -32.69268 -31.64660 -30.27195 -29.73096 -26.78939 -25.42744 -25.17777 -24.17904 -21.87954 -21.52740 -20.62498 -20.03640 -18.39765 -18.25512 -18.02015 -16.96436 -16.49509 -16.12877 -16.10555 -15.67599 -15.56755 -15.16173 -15.01604 -14.68867 -14.21823 -13.98745 -13.75862 -13.61516 -13.27352 -13.13607 -12.73760 -12.62820 -12.54139 -12.47900 -12.02825 -11.98254 -11.86441 -11.20224 -11.11316 -10.92097 -10.45151 -10.16890 -9.94829 -9.64835 -9.63881 -9.57161 -9.45492 -9.16055 -8.74073 -8.45924 -7.47640 -7.16403 -4.89636 0.00042 0.43414 1.58051 1.75999 2.27609 2.45724 2.47287 2.84356 3.29452 3.52117 3.54280 3.61747 3.81880 3.99711 4.08638 4.29161 4.34020 4.35939 4.49297 4.66183 4.68966 4.98673 5.05289 5.06431 5.23518 5.35473 5.36264 5.43270 5.68282 5.70215 5.73612 5.78792 5.88945 5.98493 6.19160 6.30200 6.58590 7.06384 7.12316 7.34931 7.40026 7.46536 7.99575 8.29289 8.50228 9.90730 10.03625 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.002201 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.449376 B =12720.552795 C =13951.876544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.511 5.511 3 C 0.346 3.654 4 C -0.491 4.491 5 H 0.083 0.917 6 C 0.063 3.937 7 N -0.806 5.806 8 Si 1.114 2.886 9 H -0.311 1.311 10 H -0.260 1.260 11 H -0.281 1.281 12 N -0.415 5.415 13 N -0.273 5.273 14 C 0.054 3.946 15 S 0.012 5.988 16 C -0.159 4.159 17 C 0.416 3.584 18 O -0.430 6.430 19 C -0.169 4.169 20 C -0.031 4.031 21 C -0.142 4.142 22 C -0.031 4.031 23 C -0.144 4.144 24 C 0.529 3.471 25 O -0.509 6.509 26 O -0.512 6.512 27 C 0.004 3.996 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.284 0.716 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.416 0.584 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.847 -23.031 -0.005 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.212 5.212 3 C 0.103 3.897 4 C -0.532 4.532 5 H 0.101 0.899 6 C -0.160 4.160 7 N -0.429 5.429 8 Si 0.942 3.058 9 H -0.241 1.241 10 H -0.186 1.186 11 H -0.207 1.207 12 N -0.266 5.266 13 N -0.116 5.116 14 C -0.319 4.319 15 S 0.239 5.761 16 C -0.308 4.308 17 C 0.291 3.709 18 O -0.304 6.304 19 C -0.172 4.172 20 C -0.050 4.050 21 C -0.160 4.160 22 C -0.049 4.049 23 C -0.145 4.145 24 C 0.373 3.627 25 O -0.398 6.398 26 O -0.324 6.324 27 C -0.014 4.014 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.276 0.724 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.842 -22.794 -0.127 24.106 hybrid contribution -2.114 -0.457 0.175 2.170 sum 5.728 -23.252 0.048 23.947 Atomic orbital electron populations 1.21564 0.77638 1.03050 1.02140 1.45809 1.06474 1.04801 1.64108 1.21714 0.85077 0.89077 0.93847 1.19408 0.97466 0.87225 1.49057 0.89863 1.27377 1.08529 0.91272 0.88775 1.70670 1.21613 1.18461 1.32202 0.82687 0.70560 0.72167 0.80368 1.24128 1.18597 1.20709 1.73964 1.15931 1.00887 1.35774 1.74213 1.15394 1.05750 1.16283 1.25649 0.91033 0.93824 1.21442 1.85179 1.06296 0.89216 1.95398 1.23922 1.02368 0.95167 1.09387 1.21778 0.88045 0.89311 0.71783 1.90585 1.26449 1.78242 1.35130 1.20256 0.94816 0.93646 1.08460 1.21966 0.91105 1.01634 0.90262 1.21232 0.99790 0.92916 1.02043 1.21760 0.96388 0.95759 0.91035 1.18939 0.94800 0.89249 1.11490 1.20780 0.81860 0.87894 0.72200 1.90931 1.26165 1.76812 1.45846 1.84530 1.38091 1.23954 1.85872 1.21515 0.99335 0.91672 0.88908 0.92039 0.91071 0.90196 0.90504 0.85326 0.85341 0.83433 0.83922 0.83814 0.72447 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.77 10.89 59.85 0.65 2.42 16 2 N -0.51 -11.63 3.26 -123.18 -0.40 -12.03 16 3 C 0.35 9.03 7.27 -154.81 -1.13 7.91 16 4 C -0.49 -12.95 9.50 -38.31 -0.36 -13.32 16 5 H 0.08 2.14 7.47 -52.49 -0.39 1.75 16 6 C 0.06 1.68 5.52 -17.29 -0.10 1.59 16 7 N -0.81 -21.31 13.65 55.56 0.76 -20.55 16 8 Si 1.11 27.33 25.90 -169.99 -4.40 22.92 16 9 H -0.31 -7.36 7.11 56.52 0.40 -6.95 16 10 H -0.26 -6.54 6.76 56.52 0.38 -6.16 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 N -0.42 -11.14 7.51 31.26 0.23 -10.91 16 13 N -0.27 -6.60 11.62 30.89 0.36 -6.24 16 14 C 0.05 1.19 8.09 -87.28 -0.71 0.48 16 15 S 0.01 0.21 20.93 -107.50 -2.25 -2.04 16 16 C -0.16 -2.12 4.31 36.01 0.16 -1.97 16 17 C 0.42 5.15 7.13 -30.68 -0.22 4.93 16 18 O -0.43 -6.51 15.85 5.58 0.09 -6.43 16 19 C -0.17 -1.69 5.86 -105.12 -0.62 -2.31 16 20 C -0.03 -0.24 9.47 -39.02 -0.37 -0.61 16 21 C -0.14 -0.87 10.01 -39.71 -0.40 -1.27 16 22 C -0.03 -0.20 9.61 -39.05 -0.38 -0.58 16 23 C -0.14 -1.26 5.87 -105.04 -0.62 -1.87 16 24 C 0.53 4.74 8.27 34.61 0.29 5.02 16 25 O -0.51 -6.22 17.13 -19.24 -0.33 -6.55 16 26 O -0.51 -2.83 12.67 -40.52 -0.51 -3.34 16 27 C 0.00 0.04 9.14 -38.68 -0.35 -0.31 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.09 7.85 -51.93 -0.41 0.69 16 30 H 0.08 1.36 7.48 -51.93 -0.39 0.97 16 31 H 0.28 7.13 8.72 -40.82 -0.36 6.78 16 32 H 0.13 1.61 8.08 -51.91 -0.42 1.19 16 33 H 0.13 1.61 8.09 -51.92 -0.42 1.19 16 34 H 0.15 0.97 7.03 -52.49 -0.37 0.60 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.14 0.63 7.60 -52.49 -0.40 0.24 16 37 H 0.42 0.53 9.11 45.56 0.42 0.95 16 38 H 0.15 1.71 7.23 -52.49 -0.38 1.33 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -35.05 355.28 -8.02 -43.07 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -2.78 Total: -3.38 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -4.15 Total: 0.11 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.95 Total: -49.73 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.75 Total: -16.31 kcal Atomic # 14 Polarization: 27.33 SS G_CDS: -4.40 Total: 22.92 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.25 Total: -2.04 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.05 -8.02 -43.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600912322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.671 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds