Wall clock time and date at job start Wed Apr 1 2020 04:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38349 * 127.15124 * 2 1 4 4 C 1.39776 * 126.56539 * 359.97438 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78826 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.78076 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87149 * 179.73605 * 3 2 1 13 13 N 1.28516 * 109.74574 * 0.25995 * 12 3 2 14 14 C 1.32389 * 110.20242 * 359.97438 * 13 12 3 15 15 S 1.76204 * 126.25914 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99786 * 0.03042 * 15 14 13 17 17 C 1.50701 * 109.47130 * 180.02562 * 16 15 14 18 18 O 1.21259 * 119.99865 * 359.97438 * 17 16 15 19 19 C 1.47182 * 120.00418 * 180.02562 * 17 16 15 20 20 C 1.39984 * 120.09679 * 359.71915 * 19 17 16 21 21 C 1.37993 * 120.12720 * 179.72163 * 20 19 17 22 22 C 1.38130 * 120.33325 * 0.55797 * 21 20 19 23 23 C 1.39762 * 120.19205 * 359.71947 * 22 21 20 24 24 C 1.47741 * 120.06306 * 180.02562 * 23 22 21 25 25 O 1.21470 * 120.00083 * 179.97438 * 24 23 22 26 26 O 1.34709 * 119.99886 * 359.97438 * 24 23 22 27 27 C 1.39318 * 119.86864 * 0.02562 * 23 22 21 28 28 H 1.09000 * 109.46642 * 90.00171 * 1 2 3 29 29 H 1.08991 * 109.47275 * 210.00238 * 1 2 3 30 30 H 1.08996 * 109.46979 * 330.00798 * 1 2 3 31 31 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 32 32 H 1.09008 * 109.47151 * 299.99549 * 16 15 14 33 33 H 1.08994 * 109.47580 * 59.99790 * 16 15 14 34 34 H 1.08000 * 119.93814 * 359.97438 * 20 19 17 35 35 H 1.07999 * 119.83108 * 180.27438 * 21 20 19 36 36 H 1.07999 * 119.90500 * 179.69738 * 22 21 20 37 37 H 0.96702 * 116.99751 * 180.02562 * 26 24 23 38 38 H 1.07998 * 120.16371 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8640 2.7018 0.0934 6 6 2.8709 3.4551 -0.1226 7 7 2.5140 4.7110 -0.0421 8 14 4.6635 3.0094 -0.4007 9 1 5.4732 4.2506 -0.4956 10 1 5.1506 2.1857 0.7349 11 1 4.7916 2.2376 -1.6629 12 7 3.5490 0.6414 0.0059 13 7 3.5371 -0.6437 0.0039 14 6 2.2904 -1.0893 -0.0027 15 16 1.7874 -2.7780 -0.0083 16 6 3.4059 -3.5881 -0.0013 17 6 3.2192 -5.0835 -0.0056 18 8 2.1021 -5.5550 -0.0121 19 6 4.3928 -5.9718 -0.0006 20 6 5.6834 -5.4297 0.0021 21 6 6.7841 -6.2619 0.0125 22 6 6.6217 -7.6336 0.0088 23 6 5.3394 -8.1895 0.0003 24 6 5.1689 -9.6570 -0.0031 25 8 4.0539 -10.1389 -0.0100 26 8 6.2500 -10.4607 0.0014 27 6 4.2223 -7.3570 -0.0050 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.5753 4.9451 0.0271 32 1 3.9654 -3.2897 -0.8880 33 1 3.9563 -3.2928 0.8919 34 1 5.8180 -4.3581 0.0001 35 1 7.7777 -5.8385 0.0190 36 1 7.4880 -8.2784 0.0121 37 1 6.0883 -11.4141 -0.0015 38 1 3.2292 -7.7814 -0.0111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600912322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:45 Heat of formation + Delta-G solvation = -61.463768 kcal Electronic energy + Delta-G solvation = -25803.495420 eV Core-core repulsion = 21737.236959 eV Total energy + Delta-G solvation = -4066.258462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.84277 -41.67079 -40.84002 -39.13255 -37.16653 -35.92757 -35.40225 -33.49906 -32.28078 -32.02030 -30.85472 -28.42367 -27.24486 -25.81589 -24.99389 -23.33685 -22.50295 -22.23336 -21.08740 -20.18252 -19.11117 -18.77963 -18.42182 -17.21418 -17.06291 -16.95879 -16.89000 -16.77060 -16.45164 -16.40622 -15.76109 -15.48000 -15.41838 -14.89164 -14.81140 -14.45528 -14.27524 -14.24611 -14.05032 -13.56787 -13.53775 -13.08808 -13.05779 -12.84041 -12.65555 -12.52762 -11.98280 -11.82610 -11.74464 -11.53607 -11.39285 -11.16447 -10.92637 -10.57208 -10.35977 -10.28663 -10.20358 -9.48097 -8.74030 -6.85379 -0.66449 -0.28204 0.16462 0.98488 1.02290 1.03532 1.52554 1.57001 1.61944 1.90718 1.96701 2.13647 2.21077 2.43300 2.64480 2.68164 3.05406 3.62507 3.72207 3.92618 3.95014 3.97846 4.00355 4.04918 4.32099 4.32809 4.36216 4.46389 4.54867 4.66094 4.69753 4.79181 5.07333 5.11379 5.22646 5.23539 5.37622 5.49716 5.63268 5.67919 6.00761 6.16089 6.39709 6.56857 6.88489 7.93108 8.14140 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.002201 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.449376 B =12720.552795 C =13951.876544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.515 5.515 3 C 0.326 3.674 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.039 3.961 7 N -0.823 5.823 8 Si 1.147 2.853 9 H -0.299 1.299 10 H -0.272 1.272 11 H -0.291 1.291 12 N -0.443 5.443 13 N -0.300 5.300 14 C 0.073 3.927 15 S 0.028 5.972 16 C -0.157 4.157 17 C 0.426 3.574 18 O -0.467 6.467 19 C -0.183 4.183 20 C -0.027 4.027 21 C -0.132 4.132 22 C -0.014 4.014 23 C -0.156 4.156 24 C 0.534 3.466 25 O -0.552 6.552 26 O -0.498 6.498 27 C -0.010 4.010 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.285 0.715 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.436 0.564 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.798 -24.895 -0.039 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.215 5.215 3 C 0.079 3.921 4 C -0.550 4.550 5 H 0.099 0.901 6 C -0.181 4.181 7 N -0.448 5.448 8 Si 0.976 3.024 9 H -0.229 1.229 10 H -0.199 1.199 11 H -0.219 1.219 12 N -0.291 5.291 13 N -0.142 5.142 14 C -0.302 4.302 15 S 0.255 5.745 16 C -0.306 4.306 17 C 0.304 3.696 18 O -0.344 6.344 19 C -0.185 4.185 20 C -0.045 4.045 21 C -0.150 4.150 22 C -0.032 4.032 23 C -0.158 4.158 24 C 0.380 3.620 25 O -0.444 6.444 26 O -0.312 6.312 27 C -0.028 4.028 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.179 0.821 35 H 0.195 0.805 36 H 0.190 0.810 37 H 0.298 0.702 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.809 -24.664 -0.159 26.544 hybrid contribution -2.686 -0.214 0.188 2.701 sum 7.123 -24.879 0.029 25.878 Atomic orbital electron populations 1.21894 0.74877 1.04519 1.03730 1.46167 1.08330 1.04256 1.62708 1.21775 0.85738 0.89804 0.94753 1.19401 0.97376 0.87697 1.50493 0.90107 1.27883 1.09997 0.91425 0.88763 1.70671 1.21820 1.18536 1.33761 0.82200 0.69268 0.71872 0.79109 1.22868 1.19887 1.21883 1.73858 1.16750 1.02261 1.36279 1.74145 1.16563 1.04805 1.18722 1.26559 0.90493 0.95932 1.17216 1.85298 1.08901 0.85629 1.94694 1.24118 1.00295 0.95457 1.10685 1.21885 0.88407 0.88882 0.70421 1.90581 1.27849 1.78561 1.37366 1.20010 0.94765 0.92978 1.10776 1.22189 0.90429 1.02657 0.89253 1.21628 1.00719 0.92492 1.00129 1.22105 0.96031 0.96436 0.88600 1.19024 0.95370 0.89143 1.12229 1.20846 0.81739 0.88301 0.71116 1.90919 1.27881 1.77544 1.48061 1.84479 1.36337 1.25429 1.84940 1.21391 0.99120 0.92158 0.90152 0.90349 0.88565 0.89802 0.90369 0.84068 0.84073 0.82075 0.80513 0.81007 0.70191 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.10 10.89 127.77 1.39 4.49 16 2 N -0.51 -22.92 3.26 -543.63 -1.77 -24.69 16 3 C 0.33 17.01 7.27 133.23 0.97 17.98 16 4 C -0.51 -27.10 9.50 23.09 0.22 -26.88 16 5 H 0.08 4.21 7.47 -2.91 -0.02 4.18 16 6 C 0.04 2.09 5.52 85.29 0.47 2.56 16 7 N -0.82 -43.81 13.65 21.86 0.30 -43.51 16 8 Si 1.15 56.11 25.90 68.60 1.78 57.89 16 9 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 10 H -0.27 -13.72 6.76 99.48 0.67 -13.05 16 11 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 12 N -0.44 -23.67 7.51 -55.02 -0.41 -24.08 16 13 N -0.30 -14.25 11.62 -56.17 -0.65 -14.90 16 14 C 0.07 3.09 8.09 179.18 1.45 4.54 16 15 S 0.03 0.92 20.93 -56.49 -1.18 -0.27 16 16 C -0.16 -3.89 4.31 71.24 0.31 -3.58 16 17 C 0.43 10.18 7.13 28.04 0.20 10.38 16 18 O -0.47 -14.16 15.85 -2.97 -0.05 -14.20 16 19 C -0.18 -3.42 5.86 -20.18 -0.12 -3.54 16 20 C -0.03 -0.34 9.47 22.64 0.21 -0.12 16 21 C -0.13 -1.06 10.01 22.19 0.22 -0.84 16 22 C -0.01 -0.13 9.61 22.61 0.22 0.09 16 23 C -0.16 -2.48 5.87 -20.14 -0.12 -2.60 16 24 C 0.53 8.95 8.27 70.33 0.58 9.53 16 25 O -0.55 -13.63 17.13 19.93 0.34 -13.29 16 26 O -0.50 -4.21 12.67 -56.19 -0.71 -4.92 16 27 C -0.01 -0.19 9.14 22.85 0.21 0.02 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.10 2.74 7.85 -2.39 -0.02 2.72 16 30 H 0.08 2.76 7.48 -2.39 -0.02 2.74 16 31 H 0.29 14.52 8.72 -92.71 -0.81 13.71 16 32 H 0.14 3.23 8.08 -2.39 -0.02 3.21 16 33 H 0.14 3.22 8.09 -2.40 -0.02 3.20 16 34 H 0.16 1.55 7.03 -2.91 -0.02 1.53 16 35 H 0.18 0.30 8.06 -2.91 -0.02 0.27 16 36 H 0.17 0.65 7.60 -2.91 -0.02 0.63 16 37 H 0.44 0.07 9.11 -74.06 -0.67 -0.61 16 38 H 0.13 3.11 7.23 -2.91 -0.02 3.09 16 Total: -1.00 -77.19 355.28 4.25 -72.94 By element: Atomic # 1 Polarization: -3.38 SS G_CDS: 0.40 Total: -2.99 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 6.21 Total: 12.03 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -2.54 Total: -107.18 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.42 Total: -32.41 kcal Atomic # 14 Polarization: 56.11 SS G_CDS: 1.78 Total: 57.89 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -1.18 Total: -0.27 kcal Total: -77.19 4.25 -72.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600912322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.472 kcal (2) G-P(sol) polarization free energy of solvation -77.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds