Wall clock time and date at job start Wed Apr 1 2020 04:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 119.99609 * 2 1 4 4 H 1.48498 * 109.47183 * 240.00368 * 3 2 1 5 5 H 1.48496 * 109.47460 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46790 * 120.00275 * 3 2 1 7 7 C 1.40046 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00111 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99888 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99666 * 179.97438 * 9 7 2 12 12 C 1.46504 * 119.99472 * 175.00049 * 11 9 7 13 13 H 1.09006 * 109.46976 * 34.10911 * 12 11 9 14 14 C 1.52994 * 109.47185 * 274.10671 * 12 11 9 15 15 C 1.50697 * 109.47065 * 173.41106 * 14 12 11 16 16 O 1.20826 * 120.00132 * 353.27100 * 15 14 12 17 17 O 1.34234 * 120.00422 * 173.27389 * 15 14 12 18 18 C 1.50707 * 109.46701 * 154.10478 * 12 11 9 19 19 C 1.38268 * 119.94138 * 220.00056 * 18 12 11 20 20 C 1.38146 * 120.05528 * 180.02562 * 19 18 12 21 21 C 1.38733 * 119.94173 * 359.97438 * 20 19 18 22 22 O 1.35902 * 120.05452 * 179.97438 * 21 20 19 23 23 C 1.42897 * 116.99824 * 180.02562 * 22 21 20 24 24 F 1.39893 * 109.47523 * 59.99774 * 23 22 21 25 25 F 1.39905 * 109.47002 * 179.97438 * 23 22 21 26 26 F 1.39906 * 109.47148 * 299.99736 * 23 22 21 27 27 C 1.38737 * 119.88787 * 0.02562 * 21 20 19 28 28 C 1.38143 * 119.94567 * 359.97438 * 27 21 20 29 29 H 0.96997 * 120.00380 * 359.97438 * 1 2 3 30 30 H 0.96992 * 120.00368 * 355.00460 * 11 9 7 31 31 H 1.09002 * 109.47076 * 293.40629 * 14 12 11 32 32 H 1.08992 * 109.47782 * 53.41011 * 14 12 11 33 33 H 0.96692 * 117.00550 * 179.97438 * 17 15 14 34 34 H 1.07998 * 119.97409 * 0.28046 * 19 18 12 35 35 H 1.07993 * 120.02810 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.02471 * 179.97438 * 27 21 20 37 37 H 1.07998 * 119.97079 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0943 1.6965 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9491 -3.6476 -0.0016 12 6 1.2209 -4.9141 0.1090 13 1 0.2609 -4.8267 -0.3999 14 6 0.9878 -5.2411 1.5853 15 6 0.1017 -6.4549 1.6970 16 8 -0.4006 -6.9295 0.7059 17 8 -0.1296 -7.0089 2.8976 18 6 2.0288 -6.0153 -0.5281 19 6 1.3974 -6.9854 -1.2844 20 6 2.1356 -7.9962 -1.8691 21 6 3.5116 -8.0371 -1.6972 22 8 4.2400 -9.0307 -2.2708 23 6 5.6518 -9.0100 -2.0509 24 9 5.9115 -9.0975 -0.6791 25 9 6.2419 -10.0957 -2.7070 26 9 6.1842 -7.8168 -2.5511 27 6 4.1427 -7.0624 -0.9378 28 6 3.4000 -6.0538 -0.3553 29 1 -0.4850 0.8400 0.0004 30 1 2.9162 -3.6492 -0.0755 31 1 1.9439 -5.4436 2.0679 32 1 0.5066 -4.3938 2.0736 33 1 -0.7048 -7.7858 2.9192 34 1 0.3267 -6.9506 -1.4217 35 1 1.6420 -8.7534 -2.4600 36 1 5.2137 -7.0924 -0.8022 37 1 3.8908 -5.2951 0.2363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601060435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:27 Heat of formation + Delta-G solvation = -297.949596 kcal Electronic energy + Delta-G solvation = -30483.164554 eV Core-core repulsion = 25389.748935 eV Total energy + Delta-G solvation = -5093.415619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.65674 -48.39156 -48.23941 -40.61670 -39.97603 -38.42833 -37.09180 -35.97739 -34.24252 -32.48740 -31.18412 -30.59796 -29.56470 -26.63372 -26.09016 -24.23743 -23.06726 -22.09112 -20.79613 -19.83755 -19.40614 -19.36256 -19.12506 -17.94349 -17.73625 -16.71423 -16.50400 -15.99610 -15.50992 -15.42111 -15.39566 -15.10209 -14.99989 -14.70805 -14.63421 -14.55101 -14.35347 -14.25756 -13.99381 -13.80754 -13.39853 -13.31998 -13.17030 -12.71695 -12.57666 -12.31048 -12.03665 -11.46341 -11.36393 -11.29147 -11.05485 -10.97313 -10.69888 -10.53706 -10.35222 -10.28238 -9.06926 -8.92650 -8.48520 -7.80506 -7.70675 -6.27019 -4.73687 1.14780 1.27032 1.30198 2.41682 2.64044 3.11316 3.16097 3.17994 3.21266 3.53768 3.56733 3.82069 4.05189 4.48608 4.56076 4.65081 4.71362 4.86180 5.08779 5.20297 5.35293 5.44619 5.51803 5.61902 5.82329 5.87301 5.95526 6.03550 6.22916 6.28872 6.40313 6.62446 6.73120 6.90156 7.35705 7.76311 7.91109 8.06525 8.21498 8.94104 9.36776 10.49024 10.66896 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.003143 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.364670 B = 8905.983169 C =10721.624145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.576 6.576 11 N -0.758 5.758 12 C 0.206 3.794 13 H 0.102 0.898 14 C -0.122 4.122 15 C 0.484 3.516 16 O -0.513 6.513 17 O -0.521 6.521 18 C -0.099 4.099 19 C -0.049 4.049 20 C -0.127 4.127 21 C 0.094 3.906 22 O -0.312 6.312 23 C 0.603 3.397 24 F -0.166 7.166 25 F -0.136 7.136 26 F -0.164 7.164 27 C -0.193 4.193 28 C -0.072 4.072 29 H 0.270 0.730 30 H 0.382 0.618 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.404 0.596 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.976 -17.126 0.262 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.458 6.458 11 N -0.413 5.413 12 C 0.099 3.901 13 H 0.120 0.880 14 C -0.161 4.161 15 C 0.327 3.673 16 O -0.401 6.401 17 O -0.333 6.333 18 C -0.100 4.100 19 C -0.067 4.067 20 C -0.146 4.146 21 C 0.052 3.948 22 O -0.232 6.232 23 C 0.512 3.488 24 F -0.148 7.148 25 F -0.117 7.117 26 F -0.146 7.146 27 C -0.211 4.211 28 C -0.090 4.090 29 H 0.081 0.919 30 H 0.215 0.785 31 H 0.118 0.882 32 H 0.137 0.863 33 H 0.262 0.738 34 H 0.166 0.834 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.985 -16.909 -0.122 18.700 hybrid contribution 1.010 0.224 0.094 1.039 sum 8.995 -16.685 -0.029 18.955 Atomic orbital electron populations 1.69994 1.07050 1.27572 1.34743 1.25698 0.94635 1.00318 0.92575 0.86419 0.79824 0.80958 0.79493 1.19250 1.20549 1.19247 1.20829 0.93619 0.89194 1.54394 0.91347 1.18273 0.87270 0.82242 0.76334 1.90623 1.13953 1.86514 1.54735 1.46329 1.09079 1.04057 1.81869 1.19105 0.96959 0.82981 0.91039 0.87979 1.21972 0.99275 0.93894 1.01003 1.23598 0.79296 0.84336 0.80085 1.90647 1.49054 1.62502 1.37945 1.84574 1.66474 1.46989 1.35226 1.20236 0.93829 0.97154 0.98784 1.21136 1.00796 0.91627 0.93183 1.20419 0.89324 1.01272 1.03565 1.18721 0.91117 0.88091 0.96877 1.86394 1.15331 1.49911 1.71592 1.19363 0.80206 0.74639 0.74565 1.93296 1.94007 1.95844 1.31686 1.93294 1.82336 1.54732 1.81330 1.93313 1.86814 1.47004 1.87516 1.21398 1.00557 0.96967 1.02190 1.20825 0.93318 0.96875 0.98000 0.91919 0.78463 0.88247 0.86277 0.73788 0.83432 0.84646 0.85123 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.05 11.83 55.55 0.66 -21.39 16 2 C 0.09 2.35 5.50 -17.37 -0.10 2.25 16 3 Si 0.91 19.37 29.56 -169.99 -5.02 14.35 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.54 -14.47 9.54 -35.63 -0.34 -14.81 16 8 H 0.07 1.66 7.85 -52.49 -0.41 1.24 16 9 C 0.55 14.59 7.72 -12.99 -0.10 14.49 16 10 O -0.58 -17.44 14.64 5.20 0.08 -17.37 16 11 N -0.76 -15.28 5.01 -56.34 -0.28 -15.56 16 12 C 0.21 3.65 2.01 -69.08 -0.14 3.51 16 13 H 0.10 2.14 6.99 -51.93 -0.36 1.78 16 14 C -0.12 -1.90 5.56 -27.89 -0.15 -2.06 16 15 C 0.48 7.07 8.01 36.00 0.29 7.36 16 16 O -0.51 -8.30 13.62 -18.75 -0.26 -8.56 16 17 O -0.52 -6.10 13.42 -39.27 -0.53 -6.62 16 18 C -0.10 -1.49 4.51 -104.60 -0.47 -1.96 16 19 C -0.05 -0.70 8.14 -39.60 -0.32 -1.02 16 20 C -0.13 -1.63 9.99 -39.43 -0.39 -2.02 16 21 C 0.09 1.21 6.48 -39.21 -0.25 0.95 16 22 O -0.31 -3.73 10.37 -19.43 -0.20 -3.94 16 23 C 0.60 6.33 3.42 101.05 0.35 6.68 16 24 F -0.17 -1.72 15.56 2.25 0.04 -1.69 16 25 F -0.14 -1.32 17.53 2.25 0.04 -1.28 16 26 F -0.16 -1.77 15.56 2.25 0.04 -1.74 16 27 C -0.19 -2.42 8.26 -39.43 -0.33 -2.75 16 28 C -0.07 -0.95 9.04 -39.61 -0.36 -1.31 16 29 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 30 H 0.38 6.73 6.85 -40.82 -0.28 6.45 16 31 H 0.10 1.31 8.12 -51.93 -0.42 0.89 16 32 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16 33 H 0.40 2.88 9.10 45.56 0.41 3.30 16 34 H 0.15 2.16 6.87 -52.49 -0.36 1.80 16 35 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.13 1.46 5.10 -52.48 -0.27 1.20 16 37 H 0.13 1.58 6.90 -52.49 -0.36 1.22 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -33.15 338.89 -4.69 -37.84 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -2.03 Total: 11.54 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -2.32 Total: 9.31 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.37 Total: -36.95 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.91 Total: -36.48 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.11 Total: -4.71 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.15 -4.69 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -260.108 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -297.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds