Wall clock time and date at job start Wed Apr 1 2020 04:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 119.99609 * 2 1 4 4 H 1.48498 * 109.47183 * 240.00368 * 3 2 1 5 5 H 1.48496 * 109.47460 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46790 * 120.00275 * 3 2 1 7 7 C 1.40046 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00111 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99888 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99666 * 179.97438 * 9 7 2 12 12 C 1.46504 * 119.99472 * 175.00049 * 11 9 7 13 13 H 1.09006 * 109.46976 * 34.10911 * 12 11 9 14 14 C 1.52994 * 109.47185 * 274.10671 * 12 11 9 15 15 C 1.50697 * 109.47065 * 173.41106 * 14 12 11 16 16 O 1.20826 * 120.00132 * 353.27100 * 15 14 12 17 17 O 1.34234 * 120.00422 * 173.27389 * 15 14 12 18 18 C 1.50707 * 109.46701 * 154.10478 * 12 11 9 19 19 C 1.38268 * 119.94138 * 220.00056 * 18 12 11 20 20 C 1.38146 * 120.05528 * 180.02562 * 19 18 12 21 21 C 1.38733 * 119.94173 * 359.97438 * 20 19 18 22 22 O 1.35902 * 120.05452 * 179.97438 * 21 20 19 23 23 C 1.42897 * 116.99824 * 180.02562 * 22 21 20 24 24 F 1.39893 * 109.47523 * 59.99774 * 23 22 21 25 25 F 1.39905 * 109.47002 * 179.97438 * 23 22 21 26 26 F 1.39906 * 109.47148 * 299.99736 * 23 22 21 27 27 C 1.38737 * 119.88787 * 0.02562 * 21 20 19 28 28 C 1.38143 * 119.94567 * 359.97438 * 27 21 20 29 29 H 0.96997 * 120.00380 * 359.97438 * 1 2 3 30 30 H 0.96992 * 120.00368 * 355.00460 * 11 9 7 31 31 H 1.09002 * 109.47076 * 293.40629 * 14 12 11 32 32 H 1.08992 * 109.47782 * 53.41011 * 14 12 11 33 33 H 0.96692 * 117.00550 * 179.97438 * 17 15 14 34 34 H 1.07998 * 119.97409 * 0.28046 * 19 18 12 35 35 H 1.07993 * 120.02810 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.02471 * 179.97438 * 27 21 20 37 37 H 1.07998 * 119.97079 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0943 1.6965 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9491 -3.6476 -0.0016 12 6 1.2209 -4.9141 0.1090 13 1 0.2609 -4.8267 -0.3999 14 6 0.9878 -5.2411 1.5853 15 6 0.1017 -6.4549 1.6970 16 8 -0.4006 -6.9295 0.7059 17 8 -0.1296 -7.0089 2.8976 18 6 2.0288 -6.0153 -0.5281 19 6 1.3974 -6.9854 -1.2844 20 6 2.1356 -7.9962 -1.8691 21 6 3.5116 -8.0371 -1.6972 22 8 4.2400 -9.0307 -2.2708 23 6 5.6518 -9.0100 -2.0509 24 9 5.9115 -9.0975 -0.6791 25 9 6.2419 -10.0957 -2.7070 26 9 6.1842 -7.8168 -2.5511 27 6 4.1427 -7.0624 -0.9378 28 6 3.4000 -6.0538 -0.3553 29 1 -0.4850 0.8400 0.0004 30 1 2.9162 -3.6492 -0.0755 31 1 1.9439 -5.4436 2.0679 32 1 0.5066 -4.3938 2.0736 33 1 -0.7048 -7.7858 2.9192 34 1 0.3267 -6.9506 -1.4217 35 1 1.6420 -8.7534 -2.4600 36 1 5.2137 -7.0924 -0.8022 37 1 3.8908 -5.2951 0.2363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601060435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:27 Heat of formation + Delta-G solvation = -321.794471 kcal Electronic energy + Delta-G solvation = -30484.198545 eV Core-core repulsion = 25389.748935 eV Total energy + Delta-G solvation = -5094.449610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.48444 -49.20129 -49.07418 -41.75347 -41.05027 -39.78704 -38.65908 -37.08425 -35.82754 -34.51103 -32.36394 -32.08059 -30.69601 -28.44958 -27.15873 -25.53003 -24.13958 -23.19500 -22.27414 -21.06967 -20.65539 -20.19923 -20.12264 -19.39728 -19.09109 -17.92099 -17.71376 -17.43499 -17.05288 -16.57319 -16.29715 -16.24668 -15.91972 -15.80179 -15.66121 -15.54487 -15.48260 -15.24381 -15.17861 -15.12112 -14.75597 -14.41996 -14.32292 -14.15368 -13.98899 -13.80245 -13.38166 -13.02663 -12.82070 -12.62349 -12.58330 -12.47749 -12.21067 -12.02156 -11.95266 -11.54042 -10.89200 -10.11141 -9.90022 -9.59978 -9.50372 -8.26387 -6.82703 0.06423 0.22863 0.41534 1.23723 1.43888 1.46241 1.57810 1.76844 2.04641 2.28578 2.46634 2.53518 2.72492 2.95012 3.17107 3.55922 3.57864 3.62078 3.70014 3.96157 4.09747 4.20937 4.31116 4.44092 4.50571 4.73671 4.80364 4.90884 4.99619 5.10902 5.33747 5.35557 5.52635 5.65445 5.84070 5.90371 6.18590 6.27747 6.90316 7.03422 7.53571 8.50771 8.69290 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.003143 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.364670 B = 8905.983169 C =10721.624145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.031 3.969 3 Si 0.994 3.006 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.570 4.570 8 H 0.090 0.910 9 C 0.543 3.457 10 O -0.626 6.626 11 N -0.743 5.743 12 C 0.212 3.788 13 H 0.061 0.939 14 C -0.119 4.119 15 C 0.491 3.509 16 O -0.532 6.532 17 O -0.512 6.512 18 C -0.112 4.112 19 C -0.056 4.056 20 C -0.125 4.125 21 C 0.095 3.905 22 O -0.315 6.315 23 C 0.607 3.393 24 F -0.163 7.163 25 F -0.130 7.130 26 F -0.164 7.164 27 C -0.190 4.190 28 C -0.070 4.070 29 H 0.274 0.726 30 H 0.397 0.603 31 H 0.128 0.872 32 H 0.094 0.906 33 H 0.427 0.573 34 H 0.137 0.863 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.575 -17.762 0.590 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.184 4.184 3 Si 0.814 3.186 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.606 4.606 8 H 0.108 0.892 9 C 0.348 3.652 10 O -0.513 6.513 11 N -0.398 5.398 12 C 0.105 3.895 13 H 0.079 0.921 14 C -0.158 4.158 15 C 0.334 3.666 16 O -0.422 6.422 17 O -0.325 6.325 18 C -0.113 4.113 19 C -0.075 4.075 20 C -0.144 4.144 21 C 0.053 3.947 22 O -0.235 6.235 23 C 0.517 3.483 24 F -0.145 7.145 25 F -0.111 7.111 26 F -0.147 7.147 27 C -0.208 4.208 28 C -0.088 4.088 29 H 0.084 0.916 30 H 0.233 0.767 31 H 0.146 0.854 32 H 0.112 0.888 33 H 0.288 0.712 34 H 0.155 0.845 35 H 0.173 0.827 36 H 0.165 0.835 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.629 -17.616 0.224 20.575 hybrid contribution 0.213 0.251 -0.009 0.329 sum 10.842 -17.365 0.215 20.473 Atomic orbital electron populations 1.70170 1.09437 1.28948 1.36370 1.26903 0.95444 1.04793 0.91287 0.85121 0.78217 0.75032 0.80268 1.18061 1.20323 1.17673 1.21395 0.94858 0.89866 1.54520 0.89175 1.18553 0.86814 0.84030 0.75849 1.90583 1.16126 1.87674 1.56879 1.45888 1.09688 1.03705 1.80513 1.18971 0.95328 0.82728 0.92432 0.92118 1.21777 1.00886 0.93774 0.99345 1.23232 0.78847 0.84006 0.80544 1.90653 1.49663 1.63097 1.38806 1.84501 1.66798 1.47983 1.33267 1.19981 0.94442 0.96780 1.00061 1.21064 1.00538 0.92252 0.93628 1.20543 0.89546 1.01067 1.03211 1.18806 0.91264 0.88182 0.96479 1.86385 1.16139 1.49527 1.71465 1.19268 0.79602 0.74760 0.74676 1.93305 1.93911 1.95832 1.31473 1.93313 1.82089 1.54446 1.81239 1.93317 1.86718 1.47076 1.87542 1.21571 1.01326 0.96369 1.01527 1.20932 0.92378 0.97435 0.98025 0.91643 0.76700 0.85382 0.88799 0.71168 0.84542 0.82735 0.83457 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.74 11.83 21.83 0.26 -48.49 16 2 C 0.03 1.67 5.50 85.30 0.47 2.14 16 3 Si 0.99 39.47 29.56 68.60 2.03 41.49 16 4 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 5 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.25 -9.36 7.11 99.48 0.71 -8.66 16 7 C -0.57 -30.55 9.54 24.83 0.24 -30.32 16 8 H 0.09 4.26 7.85 -2.91 -0.02 4.24 16 9 C 0.54 29.52 7.72 86.36 0.67 30.18 16 10 O -0.63 -39.93 14.64 -4.32 -0.06 -40.00 16 11 N -0.74 -30.43 5.01 -450.38 -2.26 -32.69 16 12 C 0.21 7.72 2.01 44.24 0.09 7.81 16 13 H 0.06 2.73 6.99 -2.38 -0.02 2.71 16 14 C -0.12 -3.74 5.56 29.85 0.17 -3.58 16 15 C 0.49 14.26 8.01 71.24 0.57 14.83 16 16 O -0.53 -17.47 13.62 21.96 0.30 -17.17 16 17 O -0.51 -11.24 13.42 -51.46 -0.69 -11.93 16 18 C -0.11 -3.31 4.51 -19.85 -0.09 -3.40 16 19 C -0.06 -1.60 8.14 22.25 0.18 -1.42 16 20 C -0.13 -3.03 9.99 22.37 0.22 -2.81 16 21 C 0.09 2.24 6.48 22.51 0.15 2.38 16 22 O -0.31 -6.78 10.37 -92.45 -0.96 -7.74 16 23 C 0.61 11.25 3.42 113.37 0.39 11.64 16 24 F -0.16 -2.95 15.56 44.97 0.70 -2.25 16 25 F -0.13 -2.23 17.53 44.97 0.79 -1.45 16 26 F -0.16 -3.13 15.56 44.97 0.70 -2.43 16 27 C -0.19 -4.30 8.26 22.37 0.18 -4.12 16 28 C -0.07 -1.72 9.04 22.25 0.20 -1.52 16 29 H 0.27 14.86 8.29 -92.71 -0.77 14.09 16 30 H 0.40 13.71 6.85 -92.71 -0.63 13.07 16 31 H 0.13 3.22 8.12 -2.39 -0.02 3.20 16 32 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.43 5.27 9.10 -74.06 -0.67 4.60 16 34 H 0.14 4.16 6.87 -2.91 -0.02 4.14 16 35 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.15 2.84 5.10 -2.91 -0.01 2.83 16 37 H 0.15 3.15 6.90 -2.91 -0.02 3.13 16 Total: -1.00 -74.15 338.89 4.12 -70.03 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.11 Total: 30.79 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 3.43 Total: 21.82 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -2.00 Total: -81.17 kcal Atomic # 8 Polarization: -75.42 SS G_CDS: -1.41 Total: -76.83 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 2.19 Total: -6.12 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.49 kcal Total: -74.15 4.12 -70.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -251.764 kcal (2) G-P(sol) polarization free energy of solvation -74.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -325.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -321.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds