Wall clock time and date at job start Wed Apr 1 2020 04:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99915 * 2 1 4 4 H 1.48496 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46682 * 299.99670 * 3 2 1 6 6 H 1.48494 * 109.47225 * 59.99714 * 3 2 1 7 7 C 1.37873 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99927 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00305 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47458 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00047 * 270.00477 * 10 9 7 12 12 C 1.53009 * 109.46940 * 262.66685 * 11 10 9 13 13 F 1.39898 * 109.46663 * 60.00169 * 12 11 10 14 14 F 1.39896 * 109.46850 * 179.97438 * 12 11 10 15 15 F 1.39899 * 109.47212 * 300.00435 * 12 11 10 16 16 C 1.34778 * 119.99769 * 90.00213 * 10 9 7 17 17 O 1.21650 * 119.99775 * 3.50499 * 16 10 9 18 18 C 1.47033 * 120.00091 * 183.50783 * 16 10 9 19 19 C 1.37721 * 125.76487 * 187.24792 * 18 16 10 20 20 C 1.39799 * 106.89486 * 179.79568 * 19 18 16 21 21 C 1.38114 * 106.83568 * 0.35349 * 20 19 18 22 22 C 1.46282 * 125.82686 * 179.90416 * 21 20 19 23 23 C 1.35360 * 119.99780 * 223.37124 * 22 21 20 24 24 C 1.46175 * 120.00278 * 7.65451 * 23 22 21 25 25 O 1.21626 * 119.99316 * 10.16908 * 24 23 22 26 26 O 1.34927 * 119.99720 * 190.16984 * 24 23 22 27 27 O 1.34580 * 108.34475 * 359.64186 * 21 20 19 28 28 H 0.97003 * 119.99983 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46870 * 59.99615 * 9 7 2 30 30 H 1.09006 * 109.47315 * 300.00371 * 9 7 2 31 31 H 1.08998 * 109.47209 * 22.66954 * 11 10 9 32 32 H 1.09000 * 109.47020 * 142.67445 * 11 10 9 33 33 H 1.07996 * 126.55561 * 0.02562 * 19 18 16 34 34 H 1.07999 * 126.58273 * 180.22727 * 20 19 18 35 35 H 1.07997 * 120.00154 * 43.36995 * 22 21 20 36 36 H 1.08000 * 120.00300 * 187.65347 * 23 22 21 37 37 H 0.96705 * 113.99524 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6791 -4.1694 -1.2681 12 6 1.8609 -5.4141 -1.6179 13 9 0.5112 -5.0662 -1.7385 14 9 2.3151 -5.9454 -2.8297 15 9 2.0078 -6.3684 -0.6054 16 6 2.6409 -4.1249 1.1678 17 8 2.1977 -3.7057 2.2203 18 6 3.6542 -5.1903 1.1691 19 6 4.0815 -5.8933 2.2735 20 6 5.0413 -6.8066 1.8273 21 6 5.1688 -6.6195 0.4649 22 6 6.0668 -7.3602 -0.4209 23 6 6.7791 -6.7031 -1.3660 24 6 6.7815 -5.2416 -1.3949 25 8 6.3014 -4.6144 -0.4700 26 8 7.3163 -4.5886 -2.4475 27 8 4.3215 -5.6432 0.0904 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6239 -2.5567 0.8903 31 1 2.5646 -3.4259 -2.0569 32 1 3.7306 -4.4405 -1.1741 33 1 3.7379 -5.7663 3.2894 34 1 5.5812 -7.5201 2.4323 35 1 6.1616 -8.4314 -0.3208 36 1 7.3456 -7.2585 -2.0987 37 1 7.2714 -3.6252 -2.3768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:41 Heat of formation + Delta-G solvation = -229.402477 kcal Electronic energy + Delta-G solvation = -32505.048785 eV Core-core repulsion = 27414.605592 eV Total energy + Delta-G solvation = -5090.443193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.80724 -47.36114 -47.25065 -42.42665 -40.17854 -38.96323 -36.30839 -35.53481 -34.21932 -32.89298 -32.72730 -29.63360 -29.18339 -27.15447 -25.26910 -23.49771 -23.29032 -21.84001 -21.59009 -19.80583 -19.70868 -18.44864 -18.26989 -18.21015 -17.91050 -17.11201 -16.72809 -16.24421 -15.83666 -15.69274 -15.47118 -14.94347 -14.45425 -14.28586 -14.20195 -14.13762 -13.98770 -13.73506 -13.51733 -13.44225 -13.42936 -13.25874 -13.14300 -12.78592 -12.45547 -12.33426 -11.92120 -11.89606 -11.64418 -11.31219 -10.98159 -10.76500 -10.70088 -10.41650 -10.28310 -9.81117 -9.79823 -9.57471 -8.52424 -8.26217 -7.98789 -6.13324 -4.19377 0.27446 1.49239 2.41219 2.67709 2.90047 2.96872 3.03811 3.25929 3.33533 3.35945 3.44493 3.63666 4.15978 4.28289 4.32004 4.38639 4.56980 4.81637 4.94032 4.95202 5.02621 5.21950 5.30119 5.49742 5.53191 5.62396 5.83726 5.87263 6.05467 6.27520 6.47241 6.70940 7.05526 7.14556 7.31394 7.71248 7.81677 7.94055 8.07842 8.54031 8.85436 9.46179 10.95039 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.004643 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.932866 B = 6028.794602 C = 6521.498640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.242 3.758 10 N -0.583 5.583 11 C 0.067 3.933 12 C 0.430 3.570 13 F -0.176 7.176 14 F -0.187 7.187 15 F -0.182 7.182 16 C 0.596 3.404 17 O -0.499 6.499 18 C -0.031 4.031 19 C -0.140 4.140 20 C -0.178 4.178 21 C 0.005 3.995 22 C 0.020 3.980 23 C -0.180 4.180 24 C 0.492 3.508 25 O -0.488 6.488 26 O -0.508 6.508 27 O -0.132 6.132 28 H 0.265 0.735 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.154 0.846 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.104 -16.706 -5.093 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.125 3.875 10 N -0.313 5.313 11 C -0.060 4.060 12 C 0.374 3.626 13 F -0.158 7.158 14 F -0.168 7.168 15 F -0.164 7.164 16 C 0.382 3.618 17 O -0.375 6.375 18 C -0.085 4.085 19 C -0.161 4.161 20 C -0.197 4.197 21 C -0.046 4.046 22 C 0.002 3.998 23 C -0.199 4.199 24 C 0.336 3.664 25 O -0.376 6.376 26 O -0.319 6.319 27 O -0.027 6.027 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.185 0.815 36 H 0.172 0.828 37 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 12.488 -16.466 -4.613 21.175 hybrid contribution 0.414 1.230 -0.044 1.298 sum 12.902 -15.236 -4.657 20.501 Atomic orbital electron populations 1.69943 1.06004 1.27195 1.49699 1.24924 0.94895 0.99287 0.94735 0.86398 0.79998 0.83091 0.77702 1.19721 1.20845 1.20745 1.21424 0.93549 0.90256 1.52103 0.92024 1.19610 0.86960 0.81269 0.99669 1.48090 1.45851 1.35017 1.02391 1.22883 0.98914 0.92616 0.91594 1.21537 0.79945 0.86947 0.74182 1.93210 1.34997 1.91921 1.95651 1.93142 1.88969 1.88175 1.46545 1.93169 1.95530 1.67302 1.60371 1.16781 0.80411 0.79859 0.84710 1.90857 1.56913 1.59287 1.30436 1.22870 0.99704 1.00573 0.85402 1.21922 0.98136 0.96601 0.99410 1.21987 1.01541 1.03055 0.93090 1.20936 0.97235 0.92323 0.94141 1.21756 0.89519 0.98982 0.89564 1.22505 1.04962 0.90647 1.01769 1.21084 0.75102 0.90163 0.80055 1.91076 1.41517 1.69001 1.36054 1.85015 1.75453 1.26850 1.44539 1.84249 1.42379 1.41229 1.34806 0.92544 0.93909 0.92837 0.85106 0.85843 0.82266 0.82657 0.81483 0.82839 0.73064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.24 6.27 5.15 -5.19 -0.03 6.24 16 10 N -0.58 -12.81 2.40 -176.47 -0.42 -13.23 16 11 C 0.07 1.19 5.21 -4.04 -0.02 1.17 16 12 C 0.43 7.22 3.21 37.16 0.12 7.34 16 13 F -0.18 -3.26 17.16 2.25 0.04 -3.22 16 14 F -0.19 -2.79 17.32 2.25 0.04 -2.75 16 15 F -0.18 -3.14 13.94 2.25 0.03 -3.11 16 16 C 0.60 13.29 7.22 -12.69 -0.09 13.20 16 17 O -0.50 -12.70 16.43 5.23 0.09 -12.61 16 18 C -0.03 -0.58 5.52 -36.21 -0.20 -0.78 16 19 C -0.14 -2.22 10.64 -39.19 -0.42 -2.64 16 20 C -0.18 -2.22 10.88 -39.04 -0.42 -2.65 16 21 C 0.01 0.07 5.37 -36.40 -0.20 -0.13 16 22 C 0.02 0.17 10.15 -37.38 -0.38 -0.21 16 23 C -0.18 -1.49 10.20 -37.42 -0.38 -1.87 16 24 C 0.49 5.63 8.00 33.92 0.27 5.90 16 25 O -0.49 -7.55 13.45 -27.38 -0.37 -7.92 16 26 O -0.51 -4.71 13.56 -41.12 -0.56 -5.27 16 27 O -0.13 -2.12 3.50 -20.18 -0.07 -2.19 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.04 1.11 7.99 -51.93 -0.42 0.70 16 30 H 0.05 1.54 7.38 -51.93 -0.38 1.16 16 31 H 0.13 2.17 8.02 -51.93 -0.42 1.75 16 32 H 0.12 2.08 5.00 -51.93 -0.26 1.82 16 33 H 0.16 2.35 8.06 -52.49 -0.42 1.92 16 34 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.41 2.64 8.98 45.56 0.41 3.05 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -35.33 344.04 -4.79 -40.13 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -2.30 Total: 1.58 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: -2.17 Total: 12.11 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.31 Total: -38.44 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.91 Total: -27.99 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 0.11 Total: -9.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.33 -4.79 -40.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.274 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds