Wall clock time and date at job start Wed Apr 1 2020 04:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99915 * 2 1 4 4 H 1.48496 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46682 * 299.99670 * 3 2 1 6 6 H 1.48494 * 109.47225 * 59.99714 * 3 2 1 7 7 C 1.37873 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99927 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00305 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47458 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00047 * 270.00477 * 10 9 7 12 12 C 1.53009 * 109.46940 * 262.66685 * 11 10 9 13 13 F 1.39898 * 109.46663 * 60.00169 * 12 11 10 14 14 F 1.39896 * 109.46850 * 179.97438 * 12 11 10 15 15 F 1.39899 * 109.47212 * 300.00435 * 12 11 10 16 16 C 1.34778 * 119.99769 * 90.00213 * 10 9 7 17 17 O 1.21650 * 119.99775 * 3.50499 * 16 10 9 18 18 C 1.47033 * 120.00091 * 183.50783 * 16 10 9 19 19 C 1.37721 * 125.76487 * 187.24792 * 18 16 10 20 20 C 1.39799 * 106.89486 * 179.79568 * 19 18 16 21 21 C 1.38114 * 106.83568 * 0.35349 * 20 19 18 22 22 C 1.46282 * 125.82686 * 179.90416 * 21 20 19 23 23 C 1.35360 * 119.99780 * 223.37124 * 22 21 20 24 24 C 1.46175 * 120.00278 * 7.65451 * 23 22 21 25 25 O 1.21626 * 119.99316 * 10.16908 * 24 23 22 26 26 O 1.34927 * 119.99720 * 190.16984 * 24 23 22 27 27 O 1.34580 * 108.34475 * 359.64186 * 21 20 19 28 28 H 0.97003 * 119.99983 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46870 * 59.99615 * 9 7 2 30 30 H 1.09006 * 109.47315 * 300.00371 * 9 7 2 31 31 H 1.08998 * 109.47209 * 22.66954 * 11 10 9 32 32 H 1.09000 * 109.47020 * 142.67445 * 11 10 9 33 33 H 1.07996 * 126.55561 * 0.02562 * 19 18 16 34 34 H 1.07999 * 126.58273 * 180.22727 * 20 19 18 35 35 H 1.07997 * 120.00154 * 43.36995 * 22 21 20 36 36 H 1.08000 * 120.00300 * 187.65347 * 23 22 21 37 37 H 0.96705 * 113.99524 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6791 -4.1694 -1.2681 12 6 1.8609 -5.4141 -1.6179 13 9 0.5112 -5.0662 -1.7385 14 9 2.3151 -5.9454 -2.8297 15 9 2.0078 -6.3684 -0.6054 16 6 2.6409 -4.1249 1.1678 17 8 2.1977 -3.7057 2.2203 18 6 3.6542 -5.1903 1.1691 19 6 4.0815 -5.8933 2.2735 20 6 5.0413 -6.8066 1.8273 21 6 5.1688 -6.6195 0.4649 22 6 6.0668 -7.3602 -0.4209 23 6 6.7791 -6.7031 -1.3660 24 6 6.7815 -5.2416 -1.3949 25 8 6.3014 -4.6144 -0.4700 26 8 7.3163 -4.5886 -2.4475 27 8 4.3215 -5.6432 0.0904 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6239 -2.5567 0.8903 31 1 2.5646 -3.4259 -2.0569 32 1 3.7306 -4.4405 -1.1741 33 1 3.7379 -5.7663 3.2894 34 1 5.5812 -7.5201 2.4323 35 1 6.1616 -8.4314 -0.3208 36 1 7.3456 -7.2585 -2.0987 37 1 7.2714 -3.6252 -2.3768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:40 Heat of formation + Delta-G solvation = -253.341926 kcal Electronic energy + Delta-G solvation = -32506.086877 eV Core-core repulsion = 27414.605592 eV Total energy + Delta-G solvation = -5091.481285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.19476 -48.69615 -48.68742 -43.56900 -41.07543 -40.63534 -37.27202 -37.13979 -35.13719 -34.81689 -33.93627 -31.26512 -30.50381 -28.86495 -26.47717 -25.05620 -24.78890 -23.08457 -22.75932 -21.18523 -20.67067 -19.72831 -19.61057 -19.43060 -19.13666 -18.67873 -18.07195 -17.80607 -17.44177 -17.02408 -16.53801 -16.34225 -15.93159 -15.60702 -15.55847 -15.53799 -15.11619 -15.04476 -14.92508 -14.82898 -14.81546 -14.42501 -14.38238 -14.12154 -14.05419 -13.60118 -13.41065 -13.23020 -13.18006 -12.89593 -12.64065 -12.52076 -12.30799 -11.81970 -11.70068 -11.37874 -11.15846 -10.88929 -10.69625 -10.00479 -9.18684 -8.28689 -6.43968 -0.57350 0.29658 1.35270 1.35466 1.37971 1.44218 1.51589 1.62738 1.86589 2.05176 2.15138 2.34678 2.36840 2.72371 2.90306 3.01561 3.11055 3.40247 3.65459 3.87238 3.94587 4.16773 4.29512 4.46935 4.60316 4.68942 4.75658 4.81023 5.00742 5.08146 5.20701 5.26272 5.46926 5.55258 5.64644 5.86170 5.92857 6.21805 6.62137 6.88378 6.93022 7.26731 8.79830 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.004643 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.932866 B = 6028.794602 C = 6521.498640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.280 1.280 7 C -0.550 4.550 8 H 0.055 0.945 9 C 0.260 3.740 10 N -0.591 5.591 11 C 0.069 3.931 12 C 0.439 3.561 13 F -0.188 7.188 14 F -0.170 7.170 15 F -0.182 7.182 16 C 0.590 3.410 17 O -0.553 6.553 18 C -0.081 4.081 19 C -0.132 4.132 20 C -0.180 4.180 21 C 0.018 3.982 22 C 0.019 3.981 23 C -0.170 4.170 24 C 0.484 3.516 25 O -0.538 6.538 26 O -0.502 6.502 27 O -0.140 6.140 28 H 0.270 0.730 29 H 0.036 0.964 30 H 0.012 0.988 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.160 0.840 34 H 0.199 0.801 35 H 0.223 0.777 36 H 0.197 0.803 37 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.130 -18.785 -6.581 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.191 1.191 6 H -0.206 1.206 7 C -0.588 4.588 8 H 0.073 0.927 9 C 0.140 3.860 10 N -0.320 5.320 11 C -0.057 4.057 12 C 0.383 3.617 13 F -0.170 7.170 14 F -0.151 7.151 15 F -0.163 7.163 16 C 0.380 3.620 17 O -0.433 6.433 18 C -0.134 4.134 19 C -0.153 4.153 20 C -0.198 4.198 21 C -0.034 4.034 22 C 0.002 3.998 23 C -0.188 4.188 24 C 0.331 3.669 25 O -0.430 6.430 26 O -0.314 6.314 27 O -0.036 6.036 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.030 0.970 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.178 0.822 34 H 0.216 0.784 35 H 0.239 0.761 36 H 0.214 0.786 37 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 15.539 -18.570 -6.159 24.985 hybrid contribution -0.378 1.755 0.333 1.826 sum 15.160 -16.815 -5.826 23.378 Atomic orbital electron populations 1.70052 1.07516 1.28416 1.50185 1.25819 0.95783 1.02933 0.94012 0.85332 0.78623 0.78462 0.78171 1.19322 1.19099 1.20593 1.21628 0.93302 0.91443 1.52436 0.92708 1.19067 0.87235 0.82453 0.97202 1.47938 1.45440 1.34458 1.04206 1.23020 0.99676 0.93155 0.89860 1.21218 0.79170 0.86608 0.74661 1.93191 1.35966 1.92078 1.95744 1.93172 1.88683 1.87846 1.45416 1.93172 1.95466 1.67158 1.60545 1.17287 0.80592 0.80260 0.83857 1.90793 1.59079 1.61483 1.31926 1.22032 1.01853 1.02369 0.87145 1.22239 0.97961 0.96206 0.98880 1.22409 1.00987 1.03115 0.93310 1.22041 0.95630 0.90175 0.95542 1.22433 0.88203 1.00961 0.88245 1.22947 1.05022 0.88788 1.02042 1.21854 0.73920 0.91691 0.79465 1.91083 1.43744 1.70276 1.37872 1.85001 1.74724 1.27949 1.43707 1.84163 1.42992 1.42248 1.34158 0.92105 0.94566 0.97021 0.84329 0.84546 0.82240 0.78403 0.76053 0.78572 0.71868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.38 13.29 21.45 0.28 -55.09 16 2 C 0.01 0.83 5.46 84.65 0.46 1.30 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.55 -31.85 9.39 25.60 0.24 -31.61 16 8 H 0.05 3.18 7.81 -2.91 -0.02 3.15 16 9 C 0.26 14.31 5.15 85.63 0.44 14.75 16 10 N -0.59 -27.40 2.40 -830.47 -1.99 -29.39 16 11 C 0.07 2.48 5.21 86.38 0.45 2.93 16 12 C 0.44 14.73 3.21 71.99 0.23 14.96 16 13 F -0.19 -7.10 17.16 44.97 0.77 -6.33 16 14 F -0.17 -4.80 17.32 44.97 0.78 -4.02 16 15 F -0.18 -6.24 13.94 44.97 0.63 -5.61 16 16 C 0.59 27.97 7.22 86.55 0.62 28.59 16 17 O -0.55 -30.39 16.43 -4.19 -0.07 -30.46 16 18 C -0.08 -3.06 5.52 24.46 0.14 -2.93 16 19 C -0.13 -4.16 10.64 22.53 0.24 -3.92 16 20 C -0.18 -3.99 10.88 22.62 0.25 -3.75 16 21 C 0.02 0.41 5.37 24.33 0.13 0.54 16 22 C 0.02 0.22 10.15 23.70 0.24 0.46 16 23 C -0.17 -1.98 10.20 23.67 0.24 -1.74 16 24 C 0.48 9.85 8.00 69.88 0.56 10.41 16 25 O -0.54 -16.10 13.45 27.09 0.36 -15.73 16 26 O -0.50 -8.11 13.56 -58.42 -0.79 -8.91 16 27 O -0.14 -4.39 3.50 14.06 0.05 -4.34 16 28 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.04 2.00 7.99 -2.39 -0.02 1.98 16 30 H 0.01 0.73 7.38 -2.38 -0.02 0.72 16 31 H 0.14 4.69 8.02 -2.39 -0.02 4.67 16 32 H 0.14 4.63 5.00 -2.39 -0.01 4.62 16 33 H 0.16 4.83 8.06 -2.91 -0.02 4.81 16 34 H 0.20 2.54 8.06 -2.91 -0.02 2.51 16 35 H 0.22 0.10 8.06 -2.91 -0.02 0.07 16 36 H 0.20 0.64 8.06 -2.91 -0.02 0.61 16 37 H 0.42 4.82 8.98 -74.05 -0.67 4.15 16 Total: -1.00 -82.61 344.04 6.79 -75.81 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.50 Total: 7.24 kcal Atomic # 6 Polarization: 25.76 SS G_CDS: 4.24 Total: 30.00 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -1.71 Total: -84.49 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -0.45 Total: -59.44 kcal Atomic # 9 Polarization: -18.13 SS G_CDS: 2.18 Total: -15.96 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -82.61 6.79 -75.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.528 kcal (2) G-P(sol) polarization free energy of solvation -82.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds