Wall clock time and date at job start Wed Apr 1 2020 04:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86792 * 119.99895 * 2 1 4 4 H 1.48496 * 109.47389 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47346 * 299.99970 * 3 2 1 6 6 H 1.48502 * 109.47509 * 59.99895 * 3 2 1 7 7 C 1.38656 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99299 * 180.02562 * 7 2 1 9 9 O 1.34821 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.35753 * 117.00443 * 185.05786 * 9 7 2 11 11 C 1.38887 * 120.06331 * 354.46665 * 10 9 7 12 12 C 1.38097 * 119.92598 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.07083 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.92847 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46897 * 90.00403 * 14 13 12 16 16 O 1.20827 * 120.00046 * 359.97438 * 15 14 13 17 17 O 1.34230 * 120.00194 * 179.97438 * 15 14 13 18 18 C 1.45194 * 117.00255 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47156 * 179.97438 * 18 17 15 20 20 C 1.35315 * 126.65666 * 90.30806 * 19 18 17 21 21 C 1.42304 * 103.91637 * 180.02562 * 20 19 18 22 22 C 1.48239 * 126.94109 * 179.90776 * 21 20 19 23 23 O 1.21412 * 119.99843 * 359.71473 * 22 21 20 24 24 O 1.34647 * 120.00256 * 179.43478 * 22 21 20 25 25 N 1.31009 * 106.11385 * 359.64648 * 21 20 19 26 26 O 1.20904 * 111.43456 * 0.22915 * 25 21 20 27 27 C 1.38303 * 120.13991 * 0.25719 * 13 12 11 28 28 C 1.38097 * 120.06424 * 359.44544 * 27 13 12 29 29 H 0.96996 * 120.00373 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.03653 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.96096 * 180.02562 * 12 11 10 32 32 H 1.09004 * 109.47416 * 330.00683 * 14 13 12 33 33 H 1.08995 * 109.47208 * 210.00310 * 14 13 12 34 34 H 1.09007 * 109.46875 * 60.00865 * 18 17 15 35 35 H 1.09000 * 109.47566 * 300.00441 * 18 17 15 36 36 H 1.07998 * 128.04297 * 359.97438 * 20 19 18 37 37 H 0.96698 * 117.00262 * 180.02562 * 24 22 21 38 38 H 1.07993 * 119.96153 * 179.70544 * 27 13 12 39 39 H 1.07998 * 120.03076 * 180.27075 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3348 -2.3684 0.0016 10 6 2.0700 -3.5046 0.1087 11 6 3.4573 -3.4394 0.0952 12 6 4.2025 -4.5970 0.2038 13 6 3.5688 -5.8202 0.3254 14 6 4.3851 -7.0815 0.4431 15 6 4.6644 -7.3652 1.8966 16 8 4.2442 -6.6194 2.7493 17 8 5.3801 -8.4464 2.2440 18 6 5.6107 -8.6566 3.6620 19 6 6.4252 -9.9093 3.8582 20 6 7.7746 -9.9960 3.9072 21 6 8.0214 -11.3834 4.1059 22 6 9.3423 -12.0443 4.2317 23 8 10.3598 -11.3855 4.1614 24 8 9.4137 -13.3742 4.4295 25 7 6.8452 -11.9577 4.1609 26 8 5.9535 -11.1525 4.0251 27 6 2.1875 -5.8890 0.3333 28 6 1.4367 -4.7344 0.2312 29 1 -0.4850 0.8400 -0.0004 30 1 3.9527 -2.4846 -0.0010 31 1 5.2813 -4.5469 0.1938 32 1 5.3275 -6.9556 -0.0901 33 1 3.8312 -7.9145 0.0103 34 1 4.6541 -8.7618 4.1739 35 1 6.1507 -7.8035 4.0727 36 1 8.4966 -9.1981 3.8159 37 1 10.2971 -13.7600 4.5057 38 1 1.6956 -6.8462 0.4236 39 1 0.3581 -4.7883 0.2418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:33 Heat of formation + Delta-G solvation = -103.759961 kcal Electronic energy + Delta-G solvation = -27676.977304 eV Core-core repulsion = 23133.839120 eV Total energy + Delta-G solvation = -4543.138184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.097 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.81705 -40.68863 -40.64637 -39.04128 -37.17597 -36.83680 -36.31385 -34.79649 -33.43504 -32.54998 -31.55961 -30.22504 -28.22015 -26.66862 -26.32836 -25.18332 -23.54309 -22.06523 -21.94284 -21.40133 -20.28013 -18.60507 -18.56047 -18.42549 -18.04649 -17.67493 -17.15571 -17.07308 -16.70145 -16.21895 -16.13731 -14.89520 -14.70356 -14.67246 -14.42624 -14.16871 -14.04729 -13.69416 -13.63485 -13.37992 -12.91263 -12.75715 -12.58214 -12.33670 -12.33036 -11.95363 -11.62453 -11.59932 -11.33517 -11.25068 -11.04236 -10.96733 -10.86603 -10.67014 -10.64032 -10.45046 -10.19764 -9.37618 -8.87256 -8.22426 -7.25528 -6.48943 -4.07489 0.25125 0.72498 1.89522 2.00158 2.17515 2.19715 2.20553 2.24442 2.86443 3.10752 3.12376 3.17609 3.32212 3.93695 3.95521 4.16925 4.38259 4.47284 4.65842 4.76563 4.84772 4.93137 5.04130 5.14570 5.14808 5.21890 5.25124 5.56192 5.65179 5.67542 5.77596 6.13361 6.17130 6.35239 6.63699 6.84611 6.99919 7.04517 7.16881 7.28696 7.33061 7.39484 7.68844 7.76580 7.96076 8.96648 9.65749 10.68877 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.026675 B = 0.001565 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.404948 B =17883.652459 C =18432.603468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.175 6.175 10 C 0.160 3.840 11 C -0.234 4.234 12 C -0.052 4.052 13 C -0.187 4.187 14 C -0.047 4.047 15 C 0.460 3.540 16 O -0.484 6.484 17 O -0.360 6.360 18 C 0.146 3.854 19 C -0.028 4.028 20 C -0.147 4.147 21 C -0.022 4.022 22 C 0.574 3.426 23 O -0.490 6.490 24 O -0.498 6.498 25 N -0.295 5.295 26 O 0.148 5.852 27 C -0.055 4.055 28 C -0.192 4.192 29 H 0.270 0.730 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.191 0.809 37 H 0.423 0.577 38 H 0.111 0.889 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.724 -22.010 6.393 27.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.078 6.078 10 C 0.105 3.895 11 C -0.253 4.253 12 C -0.070 4.070 13 C -0.188 4.188 14 C -0.085 4.085 15 C 0.302 3.698 16 O -0.368 6.368 17 O -0.278 6.278 18 C 0.071 3.929 19 C -0.090 4.090 20 C -0.169 4.169 21 C -0.177 4.177 22 C 0.414 3.586 23 O -0.376 6.376 24 O -0.309 6.309 25 N 0.010 4.990 26 O 0.063 5.937 27 C -0.074 4.074 28 C -0.211 4.211 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.209 0.791 37 H 0.282 0.718 38 H 0.129 0.871 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.782 -22.519 6.799 27.782 hybrid contribution 1.565 1.221 0.178 1.993 sum 16.347 -21.298 6.977 27.740 Atomic orbital electron populations 1.70048 1.05980 1.27664 1.45801 1.25310 0.95857 0.98892 0.96454 0.85632 0.79144 0.80282 0.78282 1.19070 1.20110 1.20107 1.21399 0.91881 0.80755 1.52777 0.88908 1.83975 1.34482 1.11542 1.77806 1.19415 0.90313 0.88048 0.91676 1.21116 0.93800 0.98828 1.11556 1.20533 0.98164 0.91668 0.96669 1.18612 0.93257 0.92475 1.14499 1.20124 1.02194 0.98437 0.87733 1.24374 0.74420 0.77314 0.93740 1.90744 1.47386 1.46610 1.52058 1.86583 1.68326 1.46805 1.26106 1.21050 1.00258 0.89892 0.81709 1.23922 0.93200 0.87497 1.04421 1.22514 0.95379 0.95626 1.03416 1.22206 0.91762 0.92734 1.11042 1.19074 0.86459 0.80430 0.72608 1.90960 1.35220 1.65530 1.45856 1.84589 1.40261 1.22467 1.83619 1.74394 0.96982 1.15074 1.12569 1.84876 1.31382 1.13923 1.63480 1.20430 0.92624 0.96885 0.97440 1.20167 0.99616 0.90216 1.11118 0.91999 0.85432 0.87588 0.87581 0.87502 0.87991 0.86923 0.79143 0.71753 0.87103 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.39 -10.82 9.49 30.89 0.29 -10.53 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 9 O -0.18 -4.94 9.76 0.07 0.00 -4.94 16 10 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 11 C -0.23 -4.96 9.17 -39.39 -0.36 -5.32 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 13 C -0.19 -2.97 4.38 -104.57 -0.46 -3.43 16 14 C -0.05 -0.53 5.94 -29.03 -0.17 -0.70 16 15 C 0.46 5.53 7.95 36.01 0.29 5.81 16 16 O -0.48 -7.57 15.78 -18.75 -0.30 -7.86 16 17 O -0.36 -3.48 10.20 -39.26 -0.40 -3.89 16 18 C 0.15 1.08 6.02 36.01 0.22 1.30 16 19 C -0.03 -0.21 7.11 -35.35 -0.25 -0.46 16 20 C -0.15 -1.09 10.92 -39.06 -0.43 -1.51 16 21 C -0.02 -0.19 7.24 -82.55 -0.60 -0.79 16 22 C 0.57 4.83 8.36 34.84 0.29 5.12 16 23 O -0.49 -5.05 17.74 -19.20 -0.34 -5.39 16 24 O -0.50 -2.97 13.44 -40.35 -0.54 -3.52 16 25 N -0.30 -2.86 12.12 33.29 0.40 -2.46 16 26 O 0.15 1.28 11.18 17.26 0.19 1.48 16 27 C -0.06 -0.95 9.69 -39.61 -0.38 -1.33 16 28 C -0.19 -3.96 9.99 -39.40 -0.39 -4.36 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.13 2.71 5.64 -52.49 -0.30 2.42 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.11 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.11 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.10 0.69 8.13 -51.92 -0.42 0.26 16 35 H 0.11 0.70 8.13 -51.93 -0.42 0.27 16 36 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.42 0.30 9.11 45.56 0.42 0.71 16 38 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 39 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -35.40 365.78 -5.10 -40.49 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -2.66 Total: 2.50 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.70 Total: -12.98 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 1.16 Total: -26.65 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -1.39 Total: -24.12 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.40 -5.10 -40.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.267 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds