Wall clock time and date at job start Wed Apr 1 2020 04:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00129 * 2 1 4 4 H 1.48499 * 109.47478 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47005 * 300.00285 * 3 2 1 6 6 H 1.48497 * 109.47437 * 59.99915 * 3 2 1 7 7 C 1.38700 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99858 * 179.97438 * 7 2 1 9 9 O 1.34818 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.35519 * 116.99958 * 185.06409 * 9 7 2 11 11 C 1.38831 * 120.16258 * 354.40220 * 10 9 7 12 12 C 1.38026 * 120.07219 * 180.02562 * 11 10 9 13 13 C 1.38580 * 120.40073 * 359.97438 * 12 11 10 14 14 C 1.37830 * 120.32044 * 0.02562 * 13 12 11 15 15 C 1.39666 * 119.92215 * 0.02562 * 14 13 12 16 16 C 1.47535 * 120.19586 * 180.02562 * 15 14 13 17 17 O 1.21590 * 119.99625 * 179.97438 * 16 15 14 18 18 N 1.34780 * 119.99858 * 359.97438 * 16 15 14 19 19 C 1.46501 * 119.99519 * 180.02562 * 18 16 15 20 20 H 1.09001 * 109.47214 * 35.00003 * 19 18 16 21 21 C 1.53001 * 109.46678 * 155.00184 * 19 18 16 22 22 C 1.52994 * 109.47222 * 294.99795 * 21 19 18 23 23 F 1.39897 * 109.47200 * 60.00045 * 22 21 19 24 24 F 1.39904 * 109.47306 * 180.02562 * 22 21 19 25 25 F 1.39906 * 109.46950 * 299.99803 * 22 21 19 26 26 C 1.50698 * 109.47085 * 274.99965 * 19 18 16 27 27 O 1.20831 * 120.00221 * 0.02562 * 26 19 18 28 28 O 1.34231 * 120.00232 * 180.02562 * 26 19 18 29 29 H 0.96995 * 119.99986 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.96666 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.80176 * 179.70214 * 12 11 10 32 32 H 1.08001 * 119.83584 * 179.97438 * 13 12 11 33 33 H 1.08002 * 120.03680 * 179.97438 * 14 13 12 34 34 H 0.96994 * 120.00404 * 0.02562 * 18 16 15 35 35 H 1.08995 * 109.47279 * 54.99906 * 21 19 18 36 36 H 1.09005 * 109.46516 * 174.99734 * 21 19 18 37 37 H 0.96700 * 117.00368 * 180.02562 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0087 -1.2012 -0.0005 8 1 3.0888 -1.2011 -0.0010 9 8 1.3347 -2.3687 -0.0005 10 6 2.0688 -3.5029 0.1055 11 6 3.4556 -3.4402 0.0911 12 6 4.2014 -4.5965 0.1987 13 6 3.5747 -5.8263 0.3222 14 6 2.1989 -5.9076 0.3383 15 6 1.4310 -4.7461 0.2293 16 6 -0.0421 -4.8261 0.2465 17 8 -0.7070 -3.8125 0.1518 18 7 -0.6506 -6.0226 0.3671 19 6 -2.1134 -6.1020 0.3836 20 1 -2.5260 -5.3425 -0.2805 21 6 -2.5542 -7.4882 -0.0907 22 6 -2.1551 -7.6768 -1.5555 23 9 -0.7664 -7.5615 -1.6791 24 9 -2.5587 -8.9442 -1.9894 25 9 -2.7759 -6.6971 -2.3378 26 6 -2.6134 -5.8683 1.7859 27 8 -1.8284 -5.6567 2.6798 28 8 -3.9307 -5.8953 2.0420 29 1 -0.4850 0.8400 0.0004 30 1 3.9514 -2.4855 -0.0044 31 1 5.2800 -4.5431 0.1821 32 1 4.1672 -6.7254 0.4054 33 1 1.7152 -6.8685 0.4344 34 1 -0.1202 -6.8311 0.4431 35 1 -2.0706 -8.2515 0.5188 36 1 -3.6363 -7.5780 0.0056 37 1 -4.2035 -5.7395 2.9566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:19 Heat of formation + Delta-G solvation = -296.722397 kcal Electronic energy + Delta-G solvation = -31334.180752 eV Core-core repulsion = 26240.818348 eV Total energy + Delta-G solvation = -5093.362404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.10362 -48.60419 -48.58034 -41.87012 -41.04405 -39.76978 -38.04887 -37.24547 -36.67717 -34.33950 -33.41409 -31.60305 -30.58016 -28.29327 -27.34879 -24.88490 -24.17282 -23.32216 -22.30679 -21.64538 -19.87607 -19.71932 -19.58939 -19.44254 -19.04465 -18.57525 -17.88296 -17.69626 -17.17040 -16.52342 -16.34637 -16.02351 -15.91111 -15.83192 -15.47149 -15.41010 -15.33399 -15.05989 -14.97387 -14.73473 -14.69224 -14.46652 -14.32196 -14.24814 -13.86241 -13.55747 -13.15467 -13.02248 -12.99329 -12.69780 -12.61793 -12.55534 -12.33526 -12.10176 -11.93091 -11.46339 -10.85157 -10.76326 -10.45475 -9.83858 -9.05033 -8.45695 -6.16301 0.08774 0.72221 0.97753 1.31942 1.42543 1.46501 1.51779 1.74805 2.00912 2.15095 2.26326 2.73218 2.84310 2.88357 3.04910 3.21726 3.44908 3.56783 3.75166 3.92709 4.06544 4.18084 4.24634 4.32368 4.43070 4.51955 4.63188 4.95771 5.06750 5.11859 5.16992 5.46579 5.49213 5.59199 5.69008 5.94912 6.15925 6.45261 6.85022 6.93890 7.31158 7.78815 8.75131 Molecular weight = 347.09amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.003769 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.072225 B = 7427.137742 C = 8320.191056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.022 4.022 3 Si 1.022 2.978 4 H -0.245 1.245 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.427 4.427 8 H 0.107 0.893 9 O -0.188 6.188 10 C 0.150 3.850 11 C -0.257 4.257 12 C -0.038 4.038 13 C -0.200 4.200 14 C -0.028 4.028 15 C -0.245 4.245 16 C 0.561 3.439 17 O -0.558 6.558 18 N -0.704 5.704 19 C 0.153 3.847 20 H 0.118 0.882 21 C -0.154 4.154 22 C 0.455 3.545 23 F -0.185 7.185 24 F -0.176 7.176 25 F -0.193 7.193 26 C 0.477 3.523 27 O -0.533 6.533 28 O -0.500 6.500 29 H 0.271 0.729 30 H 0.124 0.876 31 H 0.155 0.845 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.419 0.581 35 H 0.158 0.842 36 H 0.171 0.829 37 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 -20.665 0.945 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.221 4.221 3 Si 0.841 3.159 4 H -0.168 1.168 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.503 4.503 8 H 0.124 0.876 9 O -0.091 6.091 10 C 0.095 3.905 11 C -0.276 4.276 12 C -0.056 4.056 13 C -0.218 4.218 14 C -0.047 4.047 15 C -0.250 4.250 16 C 0.352 3.648 17 O -0.435 6.435 18 N -0.361 5.361 19 C 0.045 3.955 20 H 0.136 0.864 21 C -0.192 4.192 22 C 0.401 3.599 23 F -0.166 7.166 24 F -0.157 7.157 25 F -0.175 7.175 26 C 0.317 3.683 27 O -0.422 6.422 28 O -0.313 6.313 29 H 0.080 0.920 30 H 0.142 0.858 31 H 0.173 0.827 32 H 0.183 0.817 33 H 0.176 0.824 34 H 0.259 0.741 35 H 0.176 0.824 36 H 0.188 0.812 37 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -3.172 -19.759 0.666 20.023 hybrid contribution 0.165 1.112 0.390 1.190 sum -3.007 -18.647 1.056 18.917 Atomic orbital electron populations 1.70320 1.08352 1.28502 1.46915 1.26752 0.96752 1.03089 0.95514 0.84500 0.78457 0.74476 0.78494 1.16829 1.19284 1.19477 1.22084 0.92721 0.81777 1.53687 0.87557 1.84168 1.35175 1.12157 1.77564 1.20069 0.91730 0.87508 0.91228 1.21299 0.92253 1.01013 1.13081 1.21450 1.00765 0.91230 0.92166 1.21182 0.93854 0.98516 1.08274 1.21295 0.94589 0.95524 0.93257 1.19176 0.91964 0.93017 1.20820 1.18485 0.88475 0.82904 0.74928 1.90938 1.66892 1.36146 1.49567 1.45493 1.04749 1.09451 1.76452 1.20267 0.82689 1.00912 0.91631 0.86419 1.23213 1.09729 0.96277 0.89969 1.20515 0.74811 0.73689 0.90926 1.93206 1.30968 1.95662 1.96777 1.93216 1.90342 1.40587 1.91541 1.93214 1.82699 1.63436 1.78150 1.23686 0.80916 0.72180 0.91504 1.90769 1.58099 1.45228 1.48106 1.84430 1.23868 1.83218 1.39783 0.92041 0.85836 0.82736 0.81724 0.82416 0.74106 0.82367 0.81178 0.70615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.54 13.67 21.62 0.30 -59.24 16 2 C -0.02 -1.31 5.49 84.85 0.47 -0.85 16 3 Si 1.02 44.68 29.55 68.60 2.03 46.70 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.43 -26.08 9.49 67.93 0.64 -25.43 16 8 H 0.11 5.84 5.21 -2.91 -0.02 5.82 16 9 O -0.19 -12.09 7.84 0.81 0.01 -12.08 16 10 C 0.15 7.85 6.66 22.91 0.15 8.00 16 11 C -0.26 -11.15 9.16 22.36 0.20 -10.94 16 12 C -0.04 -1.20 10.03 22.30 0.22 -0.98 16 13 C -0.20 -5.45 10.03 22.25 0.22 -5.22 16 14 C -0.03 -0.88 9.53 22.52 0.21 -0.66 16 15 C -0.25 -10.85 5.89 -19.99 -0.12 -10.96 16 16 C 0.56 25.44 7.59 86.69 0.66 26.10 16 17 O -0.56 -32.48 14.83 16.90 0.25 -32.23 16 18 N -0.70 -21.59 3.29 -449.27 -1.48 -23.07 16 19 C 0.15 3.90 2.42 44.24 0.11 4.01 16 20 H 0.12 3.63 7.10 -2.39 -0.02 3.62 16 21 C -0.15 -2.01 4.84 30.59 0.15 -1.86 16 22 C 0.45 8.32 3.16 71.98 0.23 8.54 16 23 F -0.18 -4.04 15.18 44.97 0.68 -3.36 16 24 F -0.18 -2.86 17.32 44.97 0.78 -2.08 16 25 F -0.19 -4.69 16.71 44.97 0.75 -3.94 16 26 C 0.48 12.87 7.66 71.24 0.55 13.42 16 27 O -0.53 -19.20 17.08 21.95 0.37 -18.83 16 28 O -0.50 -9.04 13.23 -51.42 -0.68 -9.72 16 29 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 30 H 0.12 5.42 5.64 -2.91 -0.02 5.41 16 31 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 32 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 33 H 0.16 3.34 6.40 -2.91 -0.02 3.32 16 34 H 0.42 9.47 5.89 -92.71 -0.55 8.92 16 35 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.17 1.21 7.99 -2.38 -0.02 1.19 16 37 H 0.43 4.45 9.10 -74.06 -0.67 3.78 16 Total: -1.00 -96.59 341.87 6.68 -89.91 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.02 Total: 24.77 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 3.70 Total: 3.16 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -1.18 Total: -82.31 kcal Atomic # 8 Polarization: -72.82 SS G_CDS: -0.05 Total: -72.86 kcal Atomic # 9 Polarization: -11.59 SS G_CDS: 2.21 Total: -9.38 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -96.59 6.68 -89.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.813 kcal (2) G-P(sol) polarization free energy of solvation -96.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -303.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -296.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds