Wall clock time and date at job start Wed Apr 1 2020 04:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47131 * 351.70687 * 3 2 1 5 5 C 1.36942 * 119.99730 * 274.50745 * 4 3 2 6 6 H 1.07995 * 120.00004 * 141.30959 * 5 4 3 7 7 C 1.38808 * 119.99893 * 321.30632 * 5 4 3 8 8 N 1.31622 * 120.00064 * 158.81746 * 7 5 4 9 9 Si 1.86804 * 120.00258 * 338.81905 * 7 5 4 10 10 H 1.48502 * 109.46929 * 87.90011 * 9 7 5 11 11 H 1.48499 * 109.47321 * 207.89923 * 9 7 5 12 12 H 1.48500 * 109.47127 * 327.90204 * 9 7 5 13 13 S 1.65595 * 120.00360 * 94.50643 * 4 3 2 14 14 O 1.42109 * 106.39915 * 343.92146 * 13 4 3 15 15 O 1.42096 * 106.40432 * 210.99949 * 13 4 3 16 16 C 1.76194 * 107.21878 * 97.45746 * 13 4 3 17 17 C 1.38338 * 119.88431 * 111.22770 * 16 13 4 18 18 C 1.38005 * 120.12522 * 180.02562 * 17 16 13 19 19 C 1.39324 * 119.87556 * 0.02562 * 18 17 16 20 20 C 1.48464 * 120.11732 * 179.72709 * 19 18 17 21 21 N 1.34045 * 126.68026 * 179.68295 * 20 19 18 22 22 N 1.28978 * 107.27217 * 179.89150 * 21 20 19 23 23 N 1.28730 * 108.94427 * 0.38093 * 22 21 20 24 24 H 0.97001 * 125.34226 * 179.78641 * 23 22 21 25 25 N 1.28873 * 109.31741 * 359.75585 * 23 22 21 26 26 C 1.39279 * 119.77034 * 359.97438 * 19 18 17 27 27 C 1.38052 * 119.87602 * 0.02562 * 26 19 18 28 28 C 1.50707 * 119.93760 * 179.97438 * 27 26 19 29 29 H 4.40638 * 5.51297 * 180.02562 * 4 1 2 30 30 H 1.09001 * 109.46637 * 231.70685 * 3 2 1 31 31 H 1.08998 * 109.46731 * 111.70445 * 3 2 1 32 32 H 0.97000 * 120.00033 * 179.97438 * 8 7 5 33 33 H 1.08000 * 119.93835 * 0.02562 * 17 16 13 34 34 H 1.07996 * 120.06356 * 180.02562 * 18 17 16 35 35 H 1.08001 * 120.05907 * 179.97438 * 26 19 18 36 36 H 1.08999 * 109.47197 * 266.74206 * 28 27 26 37 37 H 1.08998 * 109.47188 * 26.74408 * 28 27 26 38 38 H 1.09000 * 109.46833 * 146.74323 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3659 0.1992 5 6 3.2756 -1.8648 1.4668 6 1 3.0197 -2.8934 1.6737 7 6 3.7471 -1.0484 2.4856 8 7 3.5021 -1.3557 3.7418 9 14 4.7293 0.4863 2.0739 10 1 3.8013 1.6269 1.8661 11 1 5.6535 0.7978 3.1938 12 1 5.5138 0.2543 0.8346 13 16 3.5177 -2.3073 -1.1082 14 8 2.9256 -1.6830 -2.2392 15 8 3.2451 -3.6495 -0.7298 16 6 5.2615 -2.1990 -1.3364 17 6 6.0584 -3.3031 -1.0920 18 6 7.4248 -3.2237 -1.2686 19 6 8.0014 -2.0286 -1.6933 20 6 9.4715 -1.9354 -1.8792 21 7 10.1606 -0.8600 -2.2859 22 7 11.4066 -1.1917 -2.3139 23 7 11.5199 -2.4219 -1.9519 24 1 12.3533 -2.9145 -1.8915 25 7 10.3523 -2.8960 -1.6819 26 6 7.1945 -0.9200 -1.9380 27 6 5.8288 -1.0104 -1.7581 28 6 4.9544 0.1884 -2.0219 29 1 -1.0497 -0.0004 -0.0001 30 1 3.0091 0.6377 0.8066 31 1 3.0092 0.3809 -0.9548 32 1 3.8319 -0.7854 4.4538 33 1 5.6105 -4.2289 -0.7624 34 1 8.0460 -4.0863 -1.0780 35 1 7.6366 0.0088 -2.2670 36 1 4.8056 0.7407 -1.0941 37 1 5.4355 0.8345 -2.7562 38 1 3.9898 -0.1430 -2.4062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602719877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:08 Heat of formation + Delta-G solvation = 160.628081 kcal Electronic energy + Delta-G solvation = -28247.152222 eV Core-core repulsion = 24222.817137 eV Total energy + Delta-G solvation = -4024.335085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.084 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.61226 -39.15408 -36.70996 -36.17353 -34.74636 -34.59449 -33.92131 -32.79372 -32.25537 -31.55396 -30.64319 -27.33834 -26.41841 -24.87716 -24.64948 -24.14434 -22.09597 -21.04111 -19.36167 -18.62341 -18.48677 -17.54126 -17.29768 -16.71272 -16.50756 -16.04875 -15.79160 -15.33774 -14.38341 -14.15898 -14.00523 -13.85869 -13.55941 -13.36484 -13.11995 -12.94623 -12.80990 -12.73466 -12.37980 -12.19130 -11.99851 -11.51794 -11.38509 -11.27450 -11.14434 -10.94478 -10.92279 -10.88513 -10.81552 -10.58581 -10.35880 -9.98177 -9.77301 -9.52105 -9.08653 -8.78893 -8.54566 -8.40799 -6.80420 -4.29871 0.52576 1.01183 1.39832 1.56341 2.05778 2.21785 2.84928 3.04484 3.06462 3.32936 3.49767 3.54880 3.77150 3.86336 4.06018 4.19897 4.58110 4.71465 4.91834 5.03972 5.04933 5.10682 5.27540 5.33361 5.44003 5.64505 5.69414 5.79554 5.81740 5.94108 5.97730 6.11949 6.15956 6.35120 6.43699 6.46050 6.52307 6.62419 6.78498 7.06344 7.27793 7.97747 8.08921 8.24921 8.70881 8.75401 10.25604 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.014585 B = 0.004062 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.356167 B = 6891.585783 C = 7421.685511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.166 4.166 3 C 0.202 3.798 4 N -0.824 5.824 5 C -0.255 4.255 6 H 0.125 0.875 7 C 0.070 3.930 8 N -0.819 5.819 9 Si 0.861 3.139 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.243 1.243 13 S 2.550 3.450 14 O -0.993 6.993 15 O -0.966 6.966 16 C -0.637 4.637 17 C -0.024 4.024 18 C -0.110 4.110 19 C 0.010 3.990 20 C 0.224 3.776 21 N -0.266 5.266 22 N -0.052 5.052 23 N -0.230 5.230 24 H 0.475 0.525 25 N -0.291 5.291 26 C -0.103 4.103 27 C 0.011 3.989 28 C -0.185 4.185 29 H 0.214 0.786 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.283 0.717 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.347 1.904 -7.210 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.169 4.169 3 C 0.078 3.922 4 N -0.648 5.648 5 C -0.403 4.403 6 H 0.143 0.857 7 C -0.146 4.146 8 N -0.454 5.454 9 Si 0.687 3.313 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.167 1.167 13 S 2.653 3.347 14 O -0.982 6.982 15 O -0.956 6.956 16 C -0.717 4.717 17 C -0.043 4.043 18 C -0.131 4.131 19 C 0.007 3.993 20 C -0.056 4.056 21 N -0.139 5.139 22 N -0.048 5.048 23 N -0.075 5.075 24 H 0.329 0.671 25 N -0.142 5.142 26 C -0.124 4.124 27 C 0.010 3.990 28 C -0.241 4.241 29 H 0.231 0.769 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.164 0.836 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.509 1.684 -8.008 13.320 hybrid contribution 1.592 0.358 0.407 1.681 sum 12.101 2.041 -7.602 14.436 Atomic orbital electron populations 1.24685 0.95648 1.00155 1.02789 1.23415 0.94591 1.00105 0.98760 1.18805 0.84786 0.85782 1.02870 1.53684 1.67514 1.24125 1.19443 1.19337 1.38975 1.01267 0.80706 0.85734 1.25783 0.95018 0.98897 0.94931 1.69809 1.38069 1.38108 0.99431 0.87295 0.81030 0.82552 0.80448 1.18716 1.20683 1.16658 1.10355 0.74553 0.75509 0.74288 1.93288 1.76381 1.76000 1.52549 1.93392 1.83674 1.35842 1.82724 1.32133 1.31658 0.98719 1.09154 1.20897 0.92536 0.97908 0.92997 1.21196 0.95454 0.96607 0.99850 1.17336 0.84114 0.95727 1.02148 1.23796 0.96297 0.85787 0.99677 1.76090 0.95966 1.24308 1.17552 1.78890 1.14299 0.97385 1.14197 1.47727 1.09229 1.08514 1.42060 0.67114 1.74964 0.91323 1.26212 1.21737 1.21075 0.92881 0.97782 1.00646 1.19329 0.93408 0.93745 0.92498 1.22020 1.02776 0.95974 1.03311 0.76944 0.89260 0.87837 0.90595 0.83564 0.84792 0.84608 0.89942 0.90202 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.80 19.25 29.55 0.57 -3.23 16 2 C -0.17 -3.37 13.64 -37.12 -0.51 -3.87 16 3 C 0.20 4.08 3.92 -6.83 -0.03 4.05 16 4 N -0.82 -18.44 2.42 -62.77 -0.15 -18.59 16 5 C -0.26 -6.28 9.56 -15.06 -0.14 -6.42 16 6 H 0.13 3.34 7.69 -52.49 -0.40 2.93 16 7 C 0.07 1.69 5.34 -17.43 -0.09 1.60 16 8 N -0.82 -20.74 13.97 55.49 0.78 -19.96 16 9 Si 0.86 17.79 25.03 -169.99 -4.25 13.53 16 10 H -0.26 -5.00 6.33 56.52 0.36 -4.65 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 12 H -0.24 -4.76 6.11 56.52 0.35 -4.41 16 13 S 2.55 56.30 5.07 -107.50 -0.55 55.76 16 14 O -0.99 -22.15 14.11 -57.17 -0.81 -22.95 16 15 O -0.97 -23.70 16.06 -57.17 -0.92 -24.62 16 16 C -0.64 -12.52 5.92 -39.52 -0.23 -12.75 16 17 C -0.02 -0.44 9.53 -39.63 -0.38 -0.82 16 18 C -0.11 -1.76 9.70 -39.26 -0.38 -2.14 16 19 C 0.01 0.16 5.88 -104.89 -0.62 -0.45 16 20 C 0.22 3.29 7.94 -156.30 -1.24 2.05 16 21 N -0.27 -3.86 12.23 32.16 0.39 -3.46 16 22 N -0.05 -0.62 13.47 60.35 0.81 0.19 16 23 N -0.23 -2.11 7.90 60.35 0.48 -1.63 16 24 H 0.47 1.85 8.96 -340.37 -3.05 -1.20 16 25 N -0.29 -3.61 12.08 32.17 0.39 -3.22 16 26 C -0.10 -1.69 9.34 -39.26 -0.37 -2.05 16 27 C 0.01 0.20 5.87 -104.67 -0.61 -0.41 16 28 C -0.19 -2.96 8.00 36.01 0.29 -2.67 16 29 H 0.21 2.79 7.80 -54.11 -0.42 2.37 16 30 H 0.09 1.77 2.91 -51.93 -0.15 1.62 16 31 H 0.10 1.83 4.02 -51.93 -0.21 1.62 16 32 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 33 H 0.15 2.54 7.32 -52.49 -0.38 2.15 16 34 H 0.13 1.81 7.88 -52.49 -0.41 1.39 16 35 H 0.14 1.95 7.89 -52.49 -0.41 1.54 16 36 H 0.08 1.27 5.35 -51.93 -0.28 0.99 16 37 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 38 H 0.12 2.09 3.87 -51.93 -0.20 1.89 16 LS Contribution 335.85 15.07 5.06 5.06 Total: -1.00 -31.29 335.85 -8.09 -39.39 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.58 Total: 7.63 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -3.74 Total: -27.12 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 2.70 Total: -46.68 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -1.72 Total: -47.57 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -4.25 Total: 13.53 kcal Atomic # 16 Polarization: 56.30 SS G_CDS: -0.55 Total: 55.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.29 -8.09 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602719877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.014 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds