Wall clock time and date at job start Wed Apr 1 2020 04:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99833 * 2 1 4 4 C 1.52997 * 109.46953 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47465 * 65.00031 * 4 3 2 6 6 C 1.46502 * 119.99986 * 275.00082 * 5 4 3 7 7 C 1.50699 * 109.47308 * 274.99854 * 6 5 4 8 8 H 1.08003 * 119.99861 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00066 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99669 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00050 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47296 * 59.99392 * 11 9 7 13 13 H 1.48503 * 109.47077 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46711 * 299.99534 * 11 9 7 15 15 S 1.65602 * 119.99946 * 94.99644 * 5 4 3 16 16 O 1.42108 * 106.39906 * 156.46422 * 15 5 4 17 17 O 1.42099 * 106.40166 * 23.54533 * 15 5 4 18 18 C 1.76190 * 107.22076 * 270.00362 * 15 5 4 19 19 C 1.35176 * 125.60959 * 89.99676 * 18 15 5 20 20 C 1.40303 * 107.12641 * 180.02562 * 19 18 15 21 21 C 1.50701 * 126.65007 * 180.02562 * 20 19 18 22 22 C 1.36647 * 106.70599 * 0.02562 * 20 19 18 23 23 C 1.46472 * 125.99698 * 179.97438 * 22 20 19 24 24 O 1.21624 * 119.99739 * 359.97438 * 23 22 20 25 25 O 1.34890 * 120.00039 * 179.97438 * 23 22 20 26 26 O 1.33915 * 125.61099 * 270.29667 * 18 15 5 27 27 H 1.09007 * 109.46872 * 299.99600 * 1 2 3 28 28 H 1.08999 * 109.47721 * 59.99487 * 1 2 3 29 29 H 1.08998 * 109.47039 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47181 * 60.00668 * 3 2 1 31 31 H 1.09001 * 109.47196 * 300.00122 * 3 2 1 32 32 H 1.09006 * 109.47177 * 305.00273 * 4 3 2 33 33 H 1.09002 * 109.47593 * 185.00411 * 4 3 2 34 34 H 1.09005 * 109.46923 * 34.99839 * 6 5 4 35 35 H 1.09007 * 109.47040 * 154.99716 * 6 5 4 36 36 H 0.97003 * 119.99565 * 180.02562 * 10 9 7 37 37 H 1.07999 * 126.43109 * 0.02562 * 19 18 15 38 38 H 1.08994 * 109.47455 * 269.99324 * 21 20 19 39 39 H 1.09001 * 109.46658 * 29.98582 * 21 20 19 40 40 H 1.09001 * 109.47418 * 149.98538 * 21 20 19 41 41 H 0.96700 * 117.00163 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0004 -0.8950 -1.3782 7 6 5.2993 -1.4246 -0.8275 8 1 6.0333 -0.7423 -0.4248 9 6 5.5513 -2.7801 -0.8388 10 7 4.6577 -3.6109 -1.3297 11 14 7.1611 -3.4367 -0.1556 12 1 7.2809 -3.0613 1.2762 13 1 7.1861 -4.9160 -0.2828 14 1 8.2957 -2.8546 -0.9165 15 16 4.4453 1.5131 -2.5263 16 8 5.3006 0.7115 -3.3296 17 8 4.8426 2.7600 -1.9727 18 6 3.0091 1.8338 -3.4952 19 6 2.1662 2.8778 -3.3314 20 6 1.1627 2.7551 -4.3043 21 6 -0.0029 3.6865 -4.5168 22 6 1.4471 1.6276 -5.0219 23 6 0.6670 1.1023 -6.1449 24 8 -0.3355 1.6838 -6.5137 25 8 1.0605 -0.0264 -6.7700 26 8 2.5699 1.0804 -4.5115 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0890 34 1 3.1677 -1.3218 -0.8190 35 1 3.9118 -1.1709 -2.4290 36 1 4.8348 -4.5646 -1.3373 37 1 2.2495 3.6593 -2.5907 38 1 -0.8486 3.3532 -3.9154 39 1 0.2797 4.6960 -4.2182 40 1 -0.2827 3.6840 -5.5703 41 1 0.5139 -0.3341 -7.5059 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606885127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:31 Heat of formation + Delta-G solvation = -180.578173 kcal Electronic energy + Delta-G solvation = -30010.701808 eV Core-core repulsion = 25599.676487 eV Total energy + Delta-G solvation = -4411.025321 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.101 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.96291 -40.19162 -37.90810 -36.94680 -36.54901 -35.54967 -35.42005 -34.39315 -32.54166 -31.10215 -29.62342 -28.20804 -26.83793 -25.77087 -24.64483 -22.89788 -22.24642 -21.90912 -20.68473 -18.74715 -18.57314 -17.85986 -17.44622 -17.14849 -16.68390 -16.31184 -16.05484 -15.81209 -15.36966 -15.23154 -14.68501 -14.53625 -14.32993 -13.89918 -13.65359 -13.54524 -13.42710 -13.00306 -12.69203 -12.54694 -12.40764 -12.19409 -12.05268 -11.91169 -11.78489 -11.76295 -11.35609 -11.22601 -11.07560 -11.06014 -10.87997 -10.71024 -10.41753 -10.10141 -10.02110 -9.77652 -9.45196 -9.22538 -8.38079 -8.17524 -5.99858 -4.03844 0.26763 0.59171 1.65284 2.19502 2.52562 3.03209 3.37530 3.41309 3.41581 3.46567 3.97635 4.04828 4.34604 4.48773 4.64788 4.81883 4.85697 5.08852 5.18010 5.25118 5.32001 5.35624 5.38061 5.46071 5.48456 5.52474 5.56288 5.61708 5.70338 5.83860 5.90353 6.12894 6.16959 6.40187 6.46749 7.27439 7.39732 7.41527 7.49898 7.68520 7.96116 8.24599 8.97023 9.59975 11.08831 Molecular weight = 347.10amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.004206 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.528723 B = 6654.847606 C = 7046.801992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.038 3.962 4 C 0.117 3.883 5 N -0.958 5.958 6 C 0.252 3.748 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.275 1.275 15 S 2.690 3.310 16 O -0.913 6.913 17 O -0.950 6.950 18 C -0.512 4.512 19 C -0.123 4.123 20 C -0.092 4.092 21 C -0.096 4.096 22 C -0.040 4.040 23 C 0.575 3.425 24 O -0.491 6.491 25 O -0.494 6.494 26 O -0.082 6.082 27 H 0.035 0.965 28 H 0.033 0.967 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.264 0.736 37 H 0.175 0.825 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.583 12.660 -3.185 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.041 4.041 4 C -0.009 4.009 5 N -0.799 5.799 6 C 0.131 3.869 7 C -0.569 4.569 8 H 0.079 0.921 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.200 1.200 15 S 2.769 3.231 16 O -0.902 6.902 17 O -0.940 6.940 18 C -0.640 4.640 19 C -0.144 4.144 20 C -0.095 4.095 21 C -0.153 4.153 22 C -0.094 4.094 23 C 0.418 3.582 24 O -0.380 6.380 25 O -0.306 6.306 26 O 0.026 5.974 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.193 0.807 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -10.653 12.595 -3.379 16.839 hybrid contribution -0.635 -0.334 -0.272 0.768 sum -11.288 12.261 -3.652 17.061 Atomic orbital electron populations 1.22711 0.82283 1.02619 0.99019 1.88141 1.18466 1.26610 1.95093 1.23202 0.95590 0.85662 0.99673 1.21459 0.90938 0.99642 0.88869 1.57466 1.80959 1.19323 1.22194 1.19354 0.98739 0.70247 0.98516 1.21407 1.02483 0.92181 1.40861 0.92111 1.24896 0.96918 0.96712 0.95278 1.69927 1.34532 1.03215 1.45430 0.86593 0.83977 0.77641 0.79416 1.20208 1.21261 1.20012 1.02930 0.73153 0.73472 0.73562 1.93654 1.59811 1.68035 1.68741 1.93574 1.78624 1.44232 1.77529 1.37448 1.22586 1.00743 1.03245 1.21750 0.93243 0.98988 1.00419 1.20763 0.98588 0.95289 0.94819 1.20500 0.93618 0.96803 1.04335 1.21036 0.91603 0.97310 0.99433 1.18760 0.81379 0.78352 0.79677 1.90966 1.24364 1.58879 1.63841 1.84739 1.57057 1.40238 1.48552 1.84368 1.32911 1.43308 1.36796 0.94610 0.94856 0.89720 0.92547 0.94222 0.87634 0.88358 0.92222 0.94336 0.92678 0.80727 0.90216 0.90601 0.89427 0.71988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.36 -6.07 9.02 -35.23 -0.32 -6.38 16 3 C 0.04 0.52 6.28 37.16 0.23 0.75 16 4 C 0.12 1.86 6.13 -4.04 -0.02 1.84 16 5 N -0.96 -19.10 2.76 -115.66 -0.32 -19.42 16 6 C 0.25 6.26 4.94 -5.19 -0.03 6.24 16 7 C -0.53 -14.53 9.38 -34.44 -0.32 -14.85 16 8 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 11 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 S 2.69 52.02 5.80 -107.50 -0.62 51.40 16 16 O -0.91 -21.53 16.99 -57.25 -0.97 -22.50 16 17 O -0.95 -17.50 16.38 -57.17 -0.94 -18.43 16 18 C -0.51 -8.72 7.35 29.64 0.22 -8.51 16 19 C -0.12 -1.70 9.64 -39.90 -0.38 -2.08 16 20 C -0.09 -1.22 6.20 -104.42 -0.65 -1.87 16 21 C -0.10 -0.95 9.81 36.01 0.35 -0.59 16 22 C -0.04 -0.61 7.18 -36.84 -0.26 -0.87 16 23 C 0.57 7.71 8.30 34.05 0.28 8.00 16 24 O -0.49 -6.64 15.53 -19.36 -0.30 -6.94 16 25 O -0.49 -5.68 13.44 -42.45 -0.57 -6.25 16 26 O -0.08 -1.49 10.67 4.69 0.05 -1.44 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.50 7.22 -51.93 -0.37 0.13 16 32 H 0.11 1.74 8.11 -51.93 -0.42 1.32 16 33 H 0.10 1.31 6.91 -51.93 -0.36 0.95 16 34 H 0.06 1.54 6.60 -51.93 -0.34 1.19 16 35 H 0.04 1.04 7.61 -51.92 -0.40 0.65 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.18 1.84 8.06 -52.49 -0.42 1.41 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.91 6.45 -51.93 -0.33 0.57 16 41 H 0.42 2.29 9.11 45.56 0.42 2.71 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -35.73 371.46 -6.56 -42.29 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -4.32 Total: -0.45 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 0.43 Total: -8.74 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.42 Total: -44.74 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -3.05 Total: -61.95 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 52.02 SS G_CDS: -0.62 Total: 51.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.73 -6.56 -42.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606885127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.285 kcal (2) G-P(sol) polarization free energy of solvation -35.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds