Wall clock time and date at job start Wed Apr 1 2020 04:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40032 * 126.08649 * 2 1 4 4 C 1.31347 * 108.76749 * 179.97438 * 3 2 1 5 5 N 1.40119 * 125.68887 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00498 * 180.02562 * 5 4 3 7 7 O 1.21625 * 120.00029 * 0.02562 * 6 5 4 8 8 C 1.47399 * 119.99653 * 180.02562 * 6 5 4 9 9 C 1.39692 * 120.22062 * 0.02562 * 8 6 5 10 10 C 1.37806 * 119.93706 * 180.27756 * 9 8 6 11 11 C 1.38660 * 120.38364 * 359.48612 * 10 9 8 12 12 C 1.37913 * 120.44080 * 0.51212 * 11 10 9 13 13 C 1.39111 * 120.04977 * 359.74727 * 12 11 10 14 14 S 1.76201 * 120.18993 * 180.02562 * 13 12 11 15 15 C 1.76200 * 99.99954 * 6.85664 * 14 13 12 16 16 H 1.07998 * 120.00102 * 5.65918 * 15 14 13 17 17 C 1.38809 * 120.00032 * 185.64948 * 15 14 13 18 18 N 1.31558 * 119.99794 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99978 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46909 * 60.00728 * 19 17 15 21 21 H 1.48496 * 109.47095 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47405 * 300.00909 * 19 17 15 23 23 C 1.39808 * 108.63470 * 0.22846 * 4 3 2 24 24 C 1.36738 * 126.08270 * 179.97438 * 2 1 3 25 25 C 1.47023 * 126.43206 * 0.02562 * 24 2 1 26 26 O 1.21541 * 120.00237 * 180.02562 * 25 24 2 27 27 O 1.34819 * 119.99639 * 359.97438 * 25 24 2 28 28 H 1.08998 * 109.47143 * 90.02226 * 1 2 3 29 29 H 1.09000 * 109.47254 * 210.02431 * 1 2 3 30 30 H 1.09002 * 109.47150 * 330.02172 * 1 2 3 31 31 H 0.97009 * 119.99482 * 0.03600 * 5 4 3 32 32 H 1.07994 * 120.02802 * 359.97438 * 9 8 6 33 33 H 1.07995 * 119.80688 * 179.72290 * 10 9 8 34 34 H 1.08001 * 119.78110 * 180.28483 * 11 10 9 35 35 H 1.07999 * 119.98034 * 179.77069 * 12 11 10 36 36 H 0.97001 * 119.99659 * 179.97438 * 18 17 15 37 37 H 1.07998 * 126.18754 * 179.76773 * 23 4 3 38 38 H 0.96701 * 116.99498 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1316 0.0000 4 6 3.5437 0.7406 0.0006 5 7 4.6629 1.5837 0.0002 6 6 5.9035 1.0571 0.0004 7 8 6.0516 -0.1501 0.0003 8 6 7.0806 1.9441 0.0006 9 6 6.9157 3.3313 0.0012 10 6 8.0204 4.1552 -0.0044 11 6 9.2977 3.6157 0.0001 12 6 9.4787 2.2485 -0.0004 13 6 8.3765 1.3998 -0.0002 14 16 8.6035 -0.3475 -0.0002 15 6 10.3514 -0.4289 0.2066 16 1 10.9173 0.4744 0.3808 17 6 11.0012 -1.6540 0.1458 18 7 10.3120 -2.7543 -0.0667 19 14 12.8543 -1.7402 0.3644 20 1 13.2205 -1.2059 1.7007 21 1 13.3003 -3.1525 0.2563 22 1 13.5154 -0.9306 -0.6905 23 6 3.5758 -0.6571 -0.0043 24 6 2.2703 -1.1051 0.0005 25 6 1.8286 -2.5074 0.0006 26 8 2.6499 -3.4033 0.0015 27 8 0.5124 -2.7994 0.0007 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 4.5447 2.5466 0.0001 32 1 5.9235 3.7576 0.0011 33 1 7.8904 5.2273 -0.0084 34 1 10.1566 4.2705 0.0003 35 1 10.4770 1.8363 -0.0007 36 1 10.7661 -3.6103 -0.1095 37 1 4.4619 -1.2745 -0.0087 38 1 0.2706 -3.7357 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608151932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:18 Heat of formation + Delta-G solvation = 0.791322 kcal Electronic energy + Delta-G solvation = -26651.059706 eV Core-core repulsion = 22587.500827 eV Total energy + Delta-G solvation = -4063.558878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56036 -40.07998 -39.40984 -37.59208 -36.41277 -34.93231 -32.80121 -32.52034 -30.71409 -30.44956 -30.34910 -26.59430 -25.87099 -24.84977 -23.67774 -22.11474 -21.23926 -20.82129 -19.80533 -18.65869 -18.14949 -17.63078 -17.06454 -16.33167 -16.03663 -15.91077 -15.28188 -15.27224 -15.05371 -14.62419 -14.58057 -14.10733 -13.91194 -13.80454 -13.44094 -13.06713 -13.00959 -12.92206 -12.52756 -12.11632 -11.88102 -11.64516 -11.29531 -11.25244 -11.20304 -11.00017 -10.74539 -10.73003 -10.37431 -9.88910 -9.74214 -9.54243 -9.03680 -8.78825 -8.49126 -8.21199 -8.16559 -6.60719 -6.49987 -4.21643 0.76766 1.36170 1.95834 1.96766 2.32552 2.55005 2.87155 3.07591 3.12674 3.17231 3.23570 3.36990 3.48996 4.02600 4.40201 4.46384 4.68835 4.91422 4.96481 5.00240 5.07629 5.25402 5.27736 5.34356 5.48127 5.55083 5.56838 5.86490 6.04551 6.09539 6.24423 6.30783 6.51612 6.63451 6.75782 6.85486 6.90788 7.06430 7.15791 7.40126 7.52985 7.57625 7.81559 8.11669 8.48715 8.95846 10.53055 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.003206 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.512276 B = 8730.167800 C =11084.176181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.347 5.347 3 N -0.295 5.295 4 C 0.304 3.696 5 N -0.640 5.640 6 C 0.559 3.441 7 O -0.483 6.483 8 C -0.179 4.179 9 C -0.058 4.058 10 C -0.185 4.185 11 C -0.073 4.073 12 C -0.151 4.151 13 C -0.055 4.055 14 S 0.196 5.804 15 C -0.598 4.598 16 H 0.092 0.908 17 C 0.085 3.915 18 N -0.854 5.854 19 Si 0.920 3.080 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.269 1.269 23 C -0.166 4.166 24 C 0.038 3.962 25 C 0.554 3.446 26 O -0.480 6.480 27 O -0.517 6.517 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.413 0.587 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.277 0.723 37 H 0.194 0.806 38 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.686 7.536 0.016 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.136 5.136 3 N -0.129 5.129 4 C 0.051 3.949 5 N -0.291 5.291 6 C 0.350 3.650 7 O -0.357 6.357 8 C -0.195 4.195 9 C -0.078 4.078 10 C -0.210 4.210 11 C -0.095 4.095 12 C -0.176 4.176 13 C -0.176 4.176 14 S 0.462 5.538 15 C -0.745 4.745 16 H 0.110 0.890 17 C -0.127 4.127 18 N -0.486 5.486 19 Si 0.745 3.255 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.194 1.194 23 C -0.198 4.198 24 C -0.088 4.088 25 C 0.395 3.605 26 O -0.364 6.364 27 O -0.330 6.330 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.251 0.749 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.158 0.842 36 H 0.087 0.913 37 H 0.211 0.789 38 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -18.724 6.173 -0.114 19.716 hybrid contribution 2.184 0.398 0.203 2.230 sum -16.540 6.571 0.089 17.797 Atomic orbital electron populations 1.22044 0.72843 1.04977 1.03781 1.48461 1.06289 1.01639 1.57190 1.77292 0.99617 1.06905 1.29064 1.18873 0.86934 0.90059 0.99038 1.42781 1.02398 1.09446 1.74437 1.18446 0.81584 0.88435 0.76554 1.90731 1.83985 1.14315 1.46659 1.18753 0.90728 0.92513 1.17483 1.20909 0.98029 0.91958 0.96911 1.20637 0.92522 0.98692 1.09127 1.21121 0.96723 0.94923 0.96754 1.21441 0.99283 0.92880 1.04003 1.23073 0.93684 1.03950 0.96871 1.84719 1.04964 0.90127 1.74027 1.24018 0.95896 0.97092 1.57448 0.89034 1.25113 1.00120 0.94479 0.93003 1.69963 1.36986 0.98741 1.42938 0.86184 0.82233 0.77726 0.79355 1.19421 1.20516 1.19446 1.22470 0.96340 0.93532 1.07418 1.20164 0.91392 0.85538 1.11710 1.19429 0.80284 0.87553 0.73242 1.91032 1.54063 1.46988 1.44325 1.84564 1.26148 1.35997 1.86328 0.90542 0.88122 0.89191 0.74945 0.87008 0.86860 0.86854 0.84209 0.91314 0.78935 0.72207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.77 10.94 59.85 0.65 1.42 16 2 N -0.35 -4.33 4.07 -63.99 -0.26 -4.59 16 3 N -0.29 -4.24 12.56 31.33 0.39 -3.85 16 4 C 0.30 4.88 8.07 -154.55 -1.25 3.63 16 5 N -0.64 -9.78 5.40 -12.24 -0.07 -9.84 16 6 C 0.56 10.55 7.72 -12.53 -0.10 10.46 16 7 O -0.48 -10.72 10.86 5.26 0.06 -10.67 16 8 C -0.18 -3.37 5.89 -104.75 -0.62 -3.99 16 9 C -0.06 -0.87 9.53 -39.20 -0.37 -1.24 16 10 C -0.19 -2.69 10.02 -39.58 -0.40 -3.09 16 11 C -0.07 -1.18 10.03 -39.54 -0.40 -1.57 16 12 C -0.15 -3.02 9.22 -39.38 -0.36 -3.38 16 13 C -0.06 -1.21 6.15 -38.39 -0.24 -1.45 16 14 S 0.20 5.08 18.56 -107.50 -2.00 3.08 16 15 C -0.60 -16.07 9.00 30.94 0.28 -15.79 16 16 H 0.09 2.31 4.98 -52.49 -0.26 2.05 16 17 C 0.08 2.27 5.49 -17.46 -0.10 2.18 16 18 N -0.85 -24.27 13.22 55.49 0.73 -23.54 16 19 Si 0.92 20.33 29.55 -169.99 -5.02 15.31 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 C -0.17 -2.84 9.41 -39.07 -0.37 -3.21 16 24 C 0.04 0.54 6.95 -82.20 -0.57 -0.03 16 25 C 0.55 6.98 8.31 34.29 0.28 7.27 16 26 O -0.48 -7.80 17.68 -19.30 -0.34 -8.14 16 27 O -0.52 -3.81 10.93 -40.82 -0.45 -4.25 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.60 6.20 -51.93 -0.32 0.28 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.41 4.97 6.85 -40.82 -0.28 4.69 16 32 H 0.11 1.24 6.40 -52.49 -0.34 0.91 16 33 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.14 2.91 5.03 -52.49 -0.26 2.64 16 36 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.19 3.82 5.87 -52.49 -0.31 3.52 16 38 H 0.42 1.17 9.11 45.56 0.42 1.59 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -34.37 346.03 -7.46 -41.83 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -2.18 Total: 8.23 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -3.54 Total: -8.80 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.80 Total: -41.81 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.73 Total: -23.06 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -2.00 Total: 3.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.37 -7.46 -41.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608151932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.621 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds