Wall clock time and date at job start Wed Apr 1 2020 04:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40032 * 126.08649 * 2 1 4 4 C 1.31347 * 108.76749 * 179.97438 * 3 2 1 5 5 N 1.40119 * 125.68887 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00498 * 180.02562 * 5 4 3 7 7 O 1.21625 * 120.00029 * 0.02562 * 6 5 4 8 8 C 1.47399 * 119.99653 * 180.02562 * 6 5 4 9 9 C 1.39692 * 120.22062 * 0.02562 * 8 6 5 10 10 C 1.37806 * 119.93706 * 180.27756 * 9 8 6 11 11 C 1.38660 * 120.38364 * 359.48612 * 10 9 8 12 12 C 1.37913 * 120.44080 * 0.51212 * 11 10 9 13 13 C 1.39111 * 120.04977 * 359.74727 * 12 11 10 14 14 S 1.76201 * 120.18993 * 180.02562 * 13 12 11 15 15 C 1.76200 * 99.99954 * 6.85664 * 14 13 12 16 16 H 1.07998 * 120.00102 * 5.65918 * 15 14 13 17 17 C 1.38809 * 120.00032 * 185.64948 * 15 14 13 18 18 N 1.31558 * 119.99794 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99978 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46909 * 60.00728 * 19 17 15 21 21 H 1.48496 * 109.47095 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47405 * 300.00909 * 19 17 15 23 23 C 1.39808 * 108.63470 * 0.22846 * 4 3 2 24 24 C 1.36738 * 126.08270 * 179.97438 * 2 1 3 25 25 C 1.47023 * 126.43206 * 0.02562 * 24 2 1 26 26 O 1.21541 * 120.00237 * 180.02562 * 25 24 2 27 27 O 1.34819 * 119.99639 * 359.97438 * 25 24 2 28 28 H 1.08998 * 109.47143 * 90.02226 * 1 2 3 29 29 H 1.09000 * 109.47254 * 210.02431 * 1 2 3 30 30 H 1.09002 * 109.47150 * 330.02172 * 1 2 3 31 31 H 0.97009 * 119.99482 * 0.03600 * 5 4 3 32 32 H 1.07994 * 120.02802 * 359.97438 * 9 8 6 33 33 H 1.07995 * 119.80688 * 179.72290 * 10 9 8 34 34 H 1.08001 * 119.78110 * 180.28483 * 11 10 9 35 35 H 1.07999 * 119.98034 * 179.77069 * 12 11 10 36 36 H 0.97001 * 119.99659 * 179.97438 * 18 17 15 37 37 H 1.07998 * 126.18754 * 179.76773 * 23 4 3 38 38 H 0.96701 * 116.99498 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1316 0.0000 4 6 3.5437 0.7406 0.0006 5 7 4.6629 1.5837 0.0002 6 6 5.9035 1.0571 0.0004 7 8 6.0516 -0.1501 0.0003 8 6 7.0806 1.9441 0.0006 9 6 6.9157 3.3313 0.0012 10 6 8.0204 4.1552 -0.0044 11 6 9.2977 3.6157 0.0001 12 6 9.4787 2.2485 -0.0004 13 6 8.3765 1.3998 -0.0002 14 16 8.6035 -0.3475 -0.0002 15 6 10.3514 -0.4289 0.2066 16 1 10.9173 0.4744 0.3808 17 6 11.0012 -1.6540 0.1458 18 7 10.3120 -2.7543 -0.0667 19 14 12.8543 -1.7402 0.3644 20 1 13.2205 -1.2059 1.7007 21 1 13.3003 -3.1525 0.2563 22 1 13.5154 -0.9306 -0.6905 23 6 3.5758 -0.6571 -0.0043 24 6 2.2703 -1.1051 0.0005 25 6 1.8286 -2.5074 0.0006 26 8 2.6499 -3.4033 0.0015 27 8 0.5124 -2.7994 0.0007 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 4.5447 2.5466 0.0001 32 1 5.9235 3.7576 0.0011 33 1 7.8904 5.2273 -0.0084 34 1 10.1566 4.2705 0.0003 35 1 10.4770 1.8363 -0.0007 36 1 10.7661 -3.6103 -0.1095 37 1 4.4619 -1.2745 -0.0087 38 1 0.2706 -3.7357 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608151932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:18 Heat of formation + Delta-G solvation = -24.425407 kcal Electronic energy + Delta-G solvation = -26652.153185 eV Core-core repulsion = 22587.500827 eV Total energy + Delta-G solvation = -4064.652358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.71585 -41.27336 -40.66498 -39.03390 -37.32684 -36.26352 -34.76140 -33.64491 -31.95494 -31.79349 -31.72056 -27.83595 -27.57230 -25.97011 -24.98569 -23.51752 -22.57798 -21.89254 -21.15868 -19.97617 -19.54660 -18.85567 -18.36462 -17.42153 -17.36590 -17.20414 -17.05055 -16.43785 -16.32819 -15.96464 -15.78844 -15.57890 -15.36264 -14.91319 -14.68703 -14.58985 -14.41419 -13.98567 -13.49615 -13.35126 -13.25480 -12.96070 -12.88821 -12.80221 -12.55423 -12.38724 -12.06343 -11.92930 -11.91392 -11.50053 -11.39611 -11.28772 -10.41297 -10.23135 -9.96476 -9.88404 -9.40326 -8.47531 -8.44527 -6.24209 -0.35966 -0.06064 0.54557 0.91105 1.09623 1.27402 1.39227 1.45153 1.55581 1.63885 1.70861 2.08209 2.09967 2.23543 2.88178 3.02716 3.23475 3.49543 3.64217 3.78029 3.99130 4.19569 4.28113 4.39328 4.46534 4.55287 4.61665 4.64235 4.79112 4.83045 4.94068 5.09674 5.31937 5.36104 5.45758 5.51224 5.55009 5.63301 5.68642 5.96338 6.10389 6.16809 6.57759 6.76869 6.96621 7.08979 8.60645 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.003206 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.512276 B = 8730.167800 C =11084.176181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.326 5.326 3 N -0.286 5.286 4 C 0.289 3.711 5 N -0.620 5.620 6 C 0.556 3.444 7 O -0.520 6.520 8 C -0.179 4.179 9 C -0.051 4.051 10 C -0.155 4.155 11 C -0.063 4.063 12 C -0.174 4.174 13 C -0.067 4.067 14 S 0.070 5.930 15 C -0.603 4.603 16 H 0.097 0.903 17 C 0.025 3.975 18 N -0.904 5.904 19 Si 0.993 3.007 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.259 1.259 23 C -0.211 4.211 24 C 0.044 3.956 25 C 0.568 3.432 26 O -0.525 6.525 27 O -0.488 6.488 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.430 0.570 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.152 0.848 35 H 0.121 0.879 36 H 0.276 0.724 37 H 0.154 0.846 38 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.204 12.065 0.147 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.114 5.114 3 N -0.121 5.121 4 C 0.038 3.962 5 N -0.272 5.272 6 C 0.346 3.654 7 O -0.396 6.396 8 C -0.193 4.193 9 C -0.070 4.070 10 C -0.178 4.178 11 C -0.084 4.084 12 C -0.199 4.199 13 C -0.186 4.186 14 S 0.330 5.670 15 C -0.749 4.749 16 H 0.115 0.885 17 C -0.181 4.181 18 N -0.539 5.539 19 Si 0.814 3.186 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.183 1.183 23 C -0.243 4.243 24 C -0.085 4.085 25 C 0.410 3.590 26 O -0.412 6.412 27 O -0.303 6.303 28 H 0.117 0.883 29 H 0.137 0.863 30 H 0.129 0.871 31 H 0.271 0.729 32 H 0.180 0.820 33 H 0.186 0.814 34 H 0.169 0.831 35 H 0.139 0.861 36 H 0.085 0.915 37 H 0.172 0.828 38 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges -21.353 10.843 0.017 23.949 hybrid contribution 2.500 -0.631 0.154 2.583 sum -18.853 10.212 0.171 21.442 Atomic orbital electron populations 1.22601 0.69432 1.06999 1.05850 1.48967 1.07842 1.00471 1.54108 1.77251 0.98721 1.07472 1.28627 1.18846 0.87505 0.89583 1.00310 1.42404 1.01282 1.10180 1.73334 1.18635 0.82768 0.87999 0.76019 1.90771 1.84656 1.16198 1.48015 1.19088 0.89481 0.94556 1.16182 1.21473 1.01093 0.89715 0.94769 1.21334 0.91032 1.01316 1.04141 1.21589 0.99334 0.93249 0.94264 1.21457 0.97936 0.94759 1.05712 1.22960 0.95813 1.01006 0.98788 1.84947 1.06136 0.95808 1.80129 1.24220 0.95824 0.97517 1.57356 0.88494 1.26155 1.05181 0.93959 0.92815 1.70132 1.38865 0.99251 1.45624 0.85087 0.75981 0.77893 0.79660 1.18563 1.20083 1.18331 1.22172 0.96741 0.94303 1.11085 1.20187 0.90882 0.86952 1.10432 1.19147 0.81379 0.86314 0.72165 1.91034 1.55736 1.47952 1.46487 1.84491 1.22496 1.38364 1.84980 0.88308 0.86282 0.87091 0.72881 0.82031 0.81423 0.83054 0.86103 0.91520 0.82805 0.69300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 10.94 127.77 1.40 2.36 16 2 N -0.33 -7.41 4.07 -356.37 -1.45 -8.86 16 3 N -0.29 -7.69 12.56 -54.80 -0.69 -8.38 16 4 C 0.29 9.31 8.07 133.15 1.07 10.38 16 5 N -0.62 -18.63 5.40 -310.87 -1.68 -20.31 16 6 C 0.56 21.79 7.72 86.66 0.67 22.46 16 7 O -0.52 -25.46 10.86 -4.11 -0.04 -25.51 16 8 C -0.18 -6.71 5.89 -19.95 -0.12 -6.83 16 9 C -0.05 -1.30 9.53 22.52 0.21 -1.08 16 10 C -0.16 -3.56 10.02 22.27 0.22 -3.34 16 11 C -0.06 -1.80 10.03 22.29 0.22 -1.58 16 12 C -0.17 -6.96 9.22 22.40 0.21 -6.75 16 13 C -0.07 -3.07 6.15 23.04 0.14 -2.93 16 14 S 0.07 4.01 18.56 -56.49 -1.05 2.96 16 15 C -0.60 -34.93 9.00 67.96 0.61 -34.32 16 16 H 0.10 5.24 4.98 -2.91 -0.01 5.23 16 17 C 0.02 1.42 5.49 84.87 0.47 1.89 16 18 N -0.90 -55.75 13.22 21.65 0.29 -55.47 16 19 Si 0.99 43.91 29.55 68.60 2.03 45.94 16 20 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 23 C -0.21 -7.70 9.41 22.60 0.21 -7.48 16 24 C 0.04 1.26 6.95 40.63 0.28 1.54 16 25 C 0.57 14.13 8.31 70.13 0.58 14.71 16 26 O -0.52 -17.86 17.68 19.70 0.35 -17.51 16 27 O -0.49 -5.83 10.93 -57.31 -0.63 -6.46 16 28 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.12 0.90 6.20 -2.39 -0.01 0.89 16 30 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.43 9.14 6.85 -92.70 -0.64 8.50 16 32 H 0.16 2.55 6.40 -2.91 -0.02 2.53 16 33 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 34 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.12 5.25 5.03 -2.91 -0.01 5.24 16 36 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 37 H 0.15 6.94 5.87 -2.91 -0.02 6.92 16 38 H 0.44 1.12 9.11 -74.06 -0.67 0.45 16 Total: -1.00 -87.58 346.03 3.19 -84.39 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.13 Total: 20.18 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 6.19 Total: -10.98 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -3.53 Total: -93.01 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -0.32 Total: -49.47 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.05 Total: 2.96 kcal Total: -87.58 3.19 -84.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608151932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.964 kcal (2) G-P(sol) polarization free energy of solvation -87.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds