Wall clock time and date at job start Wed Apr 1 2020 04:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.50698 * 109.47052 * 179.97438 * 16 15 14 18 18 O 1.21226 * 120.00211 * 359.97438 * 17 16 15 19 19 C 1.47412 * 120.00113 * 179.97438 * 17 16 15 20 20 C 1.39799 * 120.02185 * 359.72842 * 19 17 16 21 21 C 1.37777 * 119.97643 * 179.71632 * 20 19 17 22 22 C 1.39611 * 120.02015 * 0.55501 * 21 20 19 23 23 C 1.47961 * 119.97690 * 179.69423 * 22 21 20 24 24 O 1.21440 * 120.00063 * 180.02562 * 23 22 21 25 25 O 1.34689 * 120.00087 * 0.02633 * 23 22 21 26 26 C 1.39611 * 120.04523 * 359.72346 * 22 21 20 27 27 C 1.37763 * 120.02630 * 359.97438 * 26 22 21 28 28 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 29 29 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 30 30 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 31 31 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 32 32 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 33 33 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 34 34 H 1.07998 * 120.01263 * 359.97150 * 20 19 17 35 35 H 1.07994 * 119.98850 * 180.27478 * 21 20 19 36 36 H 0.96691 * 117.00282 * 179.97438 * 25 23 22 37 37 H 1.08007 * 119.98819 * 179.97438 * 26 22 21 38 38 H 1.08001 * 120.01748 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2192 -5.0835 -0.0015 18 8 2.1024 -5.5549 -0.0069 19 6 4.3946 -5.9730 0.0033 20 6 5.6828 -5.4300 0.0038 21 6 6.7807 -6.2623 0.0142 22 6 6.6072 -7.6475 0.0126 23 6 7.7870 -8.5404 0.0170 24 8 7.6365 -9.7455 0.0151 25 8 9.0279 -8.0168 0.0230 26 6 5.3211 -8.1909 0.0063 27 6 4.2219 -7.3604 0.0021 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.5753 4.9451 0.0298 32 1 3.9654 -3.2905 -0.8867 33 1 3.9562 -3.2921 0.8932 34 1 5.8173 -4.3584 0.0001 35 1 7.7759 -5.8429 0.0190 36 1 9.7673 -8.6398 0.0261 37 1 5.1879 -9.2627 0.0046 38 1 3.2271 -7.7809 -0.0032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610597782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:48 Heat of formation + Delta-G solvation = -39.028989 kcal Electronic energy + Delta-G solvation = -25732.448219 eV Core-core repulsion = 21667.162602 eV Total energy + Delta-G solvation = -4065.285617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.00983 -40.97479 -40.08084 -38.37030 -36.58741 -34.00137 -33.64430 -32.64948 -31.70012 -30.27030 -29.74128 -26.80544 -25.87013 -25.31664 -23.11115 -22.33832 -21.53158 -20.60068 -20.00164 -18.66557 -18.26558 -18.07963 -17.05629 -16.92485 -16.12963 -15.71890 -15.61139 -15.36646 -15.19373 -15.03770 -14.34679 -14.30597 -14.02559 -13.87397 -13.62604 -13.27927 -13.17103 -12.90688 -12.75977 -12.60415 -12.55472 -12.05029 -11.99009 -11.65237 -11.20947 -11.17841 -10.92705 -10.47341 -10.21430 -9.95570 -9.64545 -9.63209 -9.56218 -9.46160 -9.17247 -8.75083 -8.46493 -7.48322 -7.18096 -4.90514 -0.26906 0.83215 1.52810 1.56265 2.29617 2.43548 2.45838 2.83399 3.29501 3.51829 3.53861 3.54471 3.81053 3.99207 4.08105 4.23523 4.35267 4.39775 4.44179 4.75237 4.81996 4.88852 5.04021 5.05215 5.19832 5.34060 5.40339 5.49620 5.65026 5.68966 5.75698 5.78408 5.87620 5.96264 6.21085 6.29210 6.57680 7.04708 7.06016 7.34177 7.36442 7.45645 7.98766 8.28415 8.49391 9.90033 10.02821 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.002280 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.886224 B =12276.821574 C =13925.534158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.511 5.511 3 C 0.346 3.654 4 C -0.490 4.490 5 H 0.083 0.917 6 C 0.063 3.937 7 N -0.805 5.805 8 Si 1.113 2.887 9 H -0.311 1.311 10 H -0.260 1.260 11 H -0.280 1.280 12 N -0.415 5.415 13 N -0.272 5.272 14 C 0.054 3.946 15 S 0.011 5.989 16 C -0.161 4.161 17 C 0.413 3.587 18 O -0.427 6.427 19 C -0.121 4.121 20 C -0.083 4.083 21 C -0.071 4.071 22 C -0.102 4.102 23 C 0.527 3.473 24 O -0.510 6.510 25 O -0.509 6.509 26 C -0.067 4.067 27 C -0.073 4.073 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.284 0.716 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.417 0.583 37 H 0.145 0.855 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.834 -21.350 -0.006 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.212 5.212 3 C 0.103 3.897 4 C -0.531 4.531 5 H 0.101 0.899 6 C -0.160 4.160 7 N -0.429 5.429 8 Si 0.942 3.058 9 H -0.241 1.241 10 H -0.186 1.186 11 H -0.207 1.207 12 N -0.265 5.265 13 N -0.116 5.116 14 C -0.320 4.320 15 S 0.238 5.762 16 C -0.310 4.310 17 C 0.287 3.713 18 O -0.301 6.301 19 C -0.124 4.124 20 C -0.101 4.101 21 C -0.089 4.089 22 C -0.103 4.103 23 C 0.371 3.629 24 O -0.399 6.399 25 O -0.321 6.321 26 C -0.086 4.086 27 C -0.091 4.091 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.276 0.724 37 H 0.163 0.837 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.700 -21.451 -0.128 22.473 hybrid contribution -1.498 -0.220 0.181 1.524 sum 5.203 -21.671 0.053 22.287 Atomic orbital electron populations 1.21562 0.77649 1.03042 1.02129 1.45807 1.06465 1.04799 1.64142 1.21715 0.85075 0.89076 0.93832 1.19410 0.97473 0.87223 1.49032 0.89859 1.27379 1.08530 0.91267 0.88773 1.70671 1.21618 1.18471 1.32158 0.82690 0.70553 0.72187 0.80381 1.24117 1.18578 1.20698 1.73973 1.15922 1.00873 1.35764 1.74216 1.15387 1.05760 1.16205 1.25627 0.91039 0.93779 1.21549 1.85137 1.06303 0.89320 1.95424 1.23935 1.02391 0.95135 1.09492 1.21951 0.88127 0.89437 0.71757 1.90563 1.26492 1.78298 1.34712 1.20638 0.94580 0.94483 1.02702 1.21649 0.90813 1.01477 0.96182 1.21492 1.00308 0.91634 0.95489 1.19291 0.91106 0.93230 1.06714 1.20936 0.83279 0.86626 0.72088 1.90900 1.86912 1.16235 1.45893 1.84551 1.16471 1.45490 1.85567 1.21238 0.90119 1.01215 0.95984 1.21384 0.99846 0.91821 0.96014 0.92045 0.91088 0.90196 0.90498 0.85236 0.85263 0.83271 0.83434 0.72385 0.83728 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.75 10.89 59.85 0.65 2.40 16 2 N -0.51 -11.53 3.26 -123.18 -0.40 -11.93 16 3 C 0.35 8.99 7.27 -154.81 -1.13 7.86 16 4 C -0.49 -12.89 9.50 -38.31 -0.36 -13.25 16 5 H 0.08 2.13 7.46 -52.49 -0.39 1.74 16 6 C 0.06 1.68 5.52 -17.29 -0.10 1.58 16 7 N -0.81 -21.24 13.65 55.56 0.76 -20.48 16 8 Si 1.11 27.27 25.90 -169.99 -4.40 22.87 16 9 H -0.31 -7.35 7.11 56.52 0.40 -6.94 16 10 H -0.26 -6.53 6.76 56.52 0.38 -6.15 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 12 N -0.42 -11.10 7.52 31.26 0.23 -10.86 16 13 N -0.27 -6.55 11.62 30.89 0.36 -6.19 16 14 C 0.05 1.16 8.09 -87.28 -0.71 0.46 16 15 S 0.01 0.19 20.92 -107.50 -2.25 -2.06 16 16 C -0.16 -2.08 4.31 36.00 0.16 -1.93 16 17 C 0.41 4.82 7.14 -30.58 -0.22 4.60 16 18 O -0.43 -6.00 15.84 5.60 0.09 -5.91 16 19 C -0.12 -1.14 5.87 -104.99 -0.62 -1.76 16 20 C -0.08 -0.66 9.46 -39.17 -0.37 -1.03 16 21 C -0.07 -0.53 9.60 -39.24 -0.38 -0.90 16 22 C -0.10 -0.84 5.88 -104.89 -0.62 -1.46 16 23 C 0.53 4.40 8.28 34.71 0.29 4.69 16 24 O -0.51 -5.62 17.12 -19.22 -0.33 -5.95 16 25 O -0.51 -2.85 12.67 -40.46 -0.51 -3.36 16 26 C -0.07 -0.55 9.58 -39.24 -0.38 -0.92 16 27 C -0.07 -0.63 9.58 -39.17 -0.38 -1.00 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 30 H 0.08 1.34 7.48 -51.93 -0.39 0.95 16 31 H 0.28 7.11 8.72 -40.82 -0.36 6.75 16 32 H 0.13 1.60 8.07 -51.91 -0.42 1.18 16 33 H 0.13 1.59 8.09 -51.92 -0.42 1.17 16 34 H 0.15 1.03 7.03 -52.49 -0.37 0.66 16 35 H 0.15 0.85 7.60 -52.49 -0.40 0.45 16 36 H 0.42 0.52 9.11 45.56 0.42 0.94 16 37 H 0.14 1.05 7.64 -52.48 -0.40 0.65 16 38 H 0.15 1.16 7.64 -52.49 -0.40 0.76 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -34.39 355.25 -8.02 -42.41 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -2.78 Total: -3.22 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -4.15 Total: -0.67 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.95 Total: -49.47 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.75 Total: -15.22 kcal Atomic # 14 Polarization: 27.27 SS G_CDS: -4.40 Total: 22.87 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.25 Total: -2.06 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.39 -8.02 -42.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610597782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.386 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds