Wall clock time and date at job start Wed Apr 1 2020 04:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.50698 * 109.47052 * 179.97438 * 16 15 14 18 18 O 1.21226 * 120.00211 * 359.97438 * 17 16 15 19 19 C 1.47412 * 120.00113 * 179.97438 * 17 16 15 20 20 C 1.39799 * 120.02185 * 359.72842 * 19 17 16 21 21 C 1.37777 * 119.97643 * 179.71632 * 20 19 17 22 22 C 1.39611 * 120.02015 * 0.55501 * 21 20 19 23 23 C 1.47961 * 119.97690 * 179.69423 * 22 21 20 24 24 O 1.21440 * 120.00063 * 180.02562 * 23 22 21 25 25 O 1.34689 * 120.00087 * 0.02633 * 23 22 21 26 26 C 1.39611 * 120.04523 * 359.72346 * 22 21 20 27 27 C 1.37763 * 120.02630 * 359.97438 * 26 22 21 28 28 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 29 29 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 30 30 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 31 31 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 32 32 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 33 33 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 34 34 H 1.07998 * 120.01263 * 359.97150 * 20 19 17 35 35 H 1.07994 * 119.98850 * 180.27478 * 21 20 19 36 36 H 0.96691 * 117.00282 * 179.97438 * 25 23 22 37 37 H 1.08007 * 119.98819 * 179.97438 * 26 22 21 38 38 H 1.08001 * 120.01748 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2192 -5.0835 -0.0015 18 8 2.1024 -5.5549 -0.0069 19 6 4.3946 -5.9730 0.0033 20 6 5.6828 -5.4300 0.0038 21 6 6.7807 -6.2623 0.0142 22 6 6.6072 -7.6475 0.0126 23 6 7.7870 -8.5404 0.0170 24 8 7.6365 -9.7455 0.0151 25 8 9.0279 -8.0168 0.0230 26 6 5.3211 -8.1909 0.0063 27 6 4.2219 -7.3604 0.0021 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.5753 4.9451 0.0298 32 1 3.9654 -3.2905 -0.8867 33 1 3.9562 -3.2921 0.8932 34 1 5.8173 -4.3584 0.0001 35 1 7.7759 -5.8429 0.0190 36 1 9.7673 -8.6398 0.0261 37 1 5.1879 -9.2627 0.0046 38 1 3.2271 -7.7809 -0.0032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610597782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:47 Heat of formation + Delta-G solvation = -60.025582 kcal Electronic energy + Delta-G solvation = -25733.358699 eV Core-core repulsion = 21667.162602 eV Total energy + Delta-G solvation = -4066.196097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.077 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.83678 -41.64969 -40.89898 -39.12910 -37.16849 -35.92448 -35.39603 -33.45580 -32.34546 -32.00640 -30.81904 -28.41764 -27.26498 -26.47159 -23.76329 -23.33999 -23.02542 -22.19304 -21.04115 -20.17913 -19.26414 -18.76579 -18.44934 -17.83554 -17.08181 -16.94128 -16.74919 -16.50973 -16.43785 -15.97146 -15.78756 -15.51465 -15.17335 -14.90605 -14.71175 -14.61765 -14.26425 -14.23422 -14.04787 -13.58875 -13.56999 -13.50368 -13.08134 -12.83568 -12.63784 -12.27738 -11.97068 -11.86292 -11.74394 -11.53257 -11.39039 -11.16715 -10.91902 -10.56669 -10.35560 -10.31593 -10.17191 -9.47738 -8.72687 -6.84944 -0.98057 0.17681 0.22101 0.74477 0.99037 1.03868 1.57082 1.57379 1.62169 1.93828 1.96724 2.14025 2.21611 2.43175 2.62589 2.63748 3.05766 3.58762 3.73000 3.82803 3.93715 4.01435 4.09680 4.12999 4.27619 4.33316 4.38579 4.47260 4.55917 4.59839 4.70245 4.90710 5.02520 5.12185 5.15255 5.23896 5.38047 5.50245 5.59078 5.68949 6.01197 6.13356 6.40200 6.57416 6.88893 7.93525 8.14935 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.002280 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.886224 B =12276.821574 C =13925.534158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.515 5.515 3 C 0.326 3.674 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.039 3.961 7 N -0.823 5.823 8 Si 1.147 2.853 9 H -0.300 1.300 10 H -0.273 1.273 11 H -0.292 1.292 12 N -0.443 5.443 13 N -0.301 5.301 14 C 0.073 3.927 15 S 0.033 5.967 16 C -0.161 4.161 17 C 0.426 3.574 18 O -0.456 6.456 19 C -0.132 4.132 20 C -0.079 4.079 21 C -0.065 4.065 22 C -0.107 4.107 23 C 0.533 3.467 24 O -0.542 6.542 25 O -0.501 6.501 26 C -0.070 4.070 27 C -0.072 4.072 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.285 0.715 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.436 0.564 37 H 0.151 0.849 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.467 -23.159 -0.045 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.215 5.215 3 C 0.079 3.921 4 C -0.550 4.550 5 H 0.099 0.901 6 C -0.180 4.180 7 N -0.448 5.448 8 Si 0.975 3.025 9 H -0.229 1.229 10 H -0.199 1.199 11 H -0.219 1.219 12 N -0.292 5.292 13 N -0.144 5.144 14 C -0.302 4.302 15 S 0.259 5.741 16 C -0.310 4.310 17 C 0.303 3.697 18 O -0.331 6.331 19 C -0.134 4.134 20 C -0.097 4.097 21 C -0.083 4.083 22 C -0.109 4.109 23 C 0.378 3.622 24 O -0.434 6.434 25 O -0.315 6.315 26 C -0.088 4.088 27 C -0.090 4.090 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.179 0.821 35 H 0.185 0.815 36 H 0.299 0.701 37 H 0.168 0.832 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.349 -23.245 -0.166 24.379 hybrid contribution -1.684 0.042 0.196 1.696 sum 5.665 -23.203 0.030 23.884 Atomic orbital electron populations 1.21900 0.74833 1.04549 1.03745 1.46171 1.08346 1.04239 1.62702 1.21774 0.85737 0.89825 0.94743 1.19398 0.97379 0.87693 1.50485 0.90067 1.27860 1.09946 0.91443 0.88784 1.70671 1.21828 1.18549 1.33792 0.82201 0.69331 0.71850 0.79095 1.22927 1.19931 1.21892 1.73862 1.16793 1.02287 1.36288 1.74149 1.16645 1.04802 1.18767 1.26594 0.90465 0.96034 1.17140 1.85206 1.08713 0.85477 1.94675 1.24149 1.00398 0.95788 1.10631 1.21930 0.88455 0.88728 0.70591 1.90565 1.27569 1.78444 1.36516 1.20455 0.94116 0.94335 1.04530 1.21795 0.90300 1.02209 0.95389 1.21676 1.01022 0.91117 0.94483 1.19458 0.91231 0.93759 1.06409 1.20918 0.83996 0.86029 0.71260 1.90895 1.87443 1.17493 1.47565 1.84509 1.16253 1.45961 1.84743 1.21318 0.90081 1.01535 0.95825 1.21432 1.00242 0.91587 0.95773 0.90331 0.88459 0.89855 0.90352 0.84191 0.84215 0.82064 0.81521 0.70118 0.83158 0.83249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.02 10.89 127.77 1.39 4.41 16 2 N -0.51 -22.60 3.26 -543.63 -1.77 -24.37 16 3 C 0.33 16.90 7.27 133.23 0.97 17.87 16 4 C -0.51 -26.95 9.50 23.09 0.22 -26.74 16 5 H 0.08 4.20 7.46 -2.91 -0.02 4.18 16 6 C 0.04 2.11 5.52 85.29 0.47 2.58 16 7 N -0.82 -43.74 13.65 21.86 0.30 -43.44 16 8 Si 1.15 56.13 25.90 68.60 1.78 57.91 16 9 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.27 -13.77 6.76 99.48 0.67 -13.10 16 11 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 12 N -0.44 -23.64 7.52 -55.02 -0.41 -24.05 16 13 N -0.30 -14.22 11.62 -56.17 -0.65 -14.87 16 14 C 0.07 3.03 8.09 179.18 1.45 4.47 16 15 S 0.03 1.01 20.92 -56.49 -1.18 -0.17 16 16 C -0.16 -3.80 4.31 71.24 0.31 -3.49 16 17 C 0.43 9.09 7.14 28.10 0.20 9.29 16 18 O -0.46 -12.04 15.84 -2.86 -0.05 -12.08 16 19 C -0.13 -2.21 5.87 -20.10 -0.12 -2.33 16 20 C -0.08 -1.06 9.46 22.54 0.21 -0.84 16 21 C -0.07 -0.78 9.60 22.49 0.22 -0.57 16 22 C -0.11 -1.54 5.88 -20.04 -0.12 -1.66 16 23 C 0.53 7.88 8.28 70.40 0.58 8.46 16 24 O -0.54 -11.26 17.12 20.03 0.34 -10.92 16 25 O -0.50 -4.29 12.67 -55.98 -0.71 -5.00 16 26 C -0.07 -1.02 9.58 22.49 0.22 -0.80 16 27 C -0.07 -1.13 9.58 22.54 0.22 -0.91 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.10 2.67 7.85 -2.39 -0.02 2.65 16 30 H 0.08 2.69 7.48 -2.39 -0.02 2.67 16 31 H 0.29 14.47 8.72 -92.71 -0.81 13.67 16 32 H 0.14 3.10 8.07 -2.39 -0.02 3.08 16 33 H 0.14 3.10 8.09 -2.40 -0.02 3.08 16 34 H 0.16 1.75 7.03 -2.91 -0.02 1.73 16 35 H 0.17 1.35 7.60 -2.91 -0.02 1.33 16 36 H 0.44 -0.02 9.11 -74.06 -0.67 -0.69 16 37 H 0.15 2.00 7.64 -2.91 -0.02 1.98 16 38 H 0.15 2.19 7.64 -2.91 -0.02 2.17 16 Total: -1.00 -73.51 355.25 4.26 -69.26 By element: Atomic # 1 Polarization: -2.41 SS G_CDS: 0.40 Total: -2.01 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 6.21 Total: 9.75 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -2.54 Total: -106.73 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.41 Total: -28.00 kcal Atomic # 14 Polarization: 56.13 SS G_CDS: 1.78 Total: 57.91 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -1.18 Total: -0.17 kcal Total: -73.51 4.26 -69.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610597782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.230 kcal (2) G-P(sol) polarization free energy of solvation -73.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds