Wall clock time and date at job start Wed Apr 1 2020 04:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86794 * 120.00098 * 2 1 4 4 H 1.48500 * 109.47368 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47532 * 29.99893 * 3 2 1 6 6 H 1.48500 * 109.47256 * 150.00373 * 3 2 1 7 7 C 1.38655 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00024 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00467 * 179.97438 * 7 2 1 10 10 C 1.35748 * 117.00344 * 185.06086 * 9 7 2 11 11 C 1.38903 * 120.06983 * 354.48539 * 10 9 7 12 12 C 1.38073 * 119.93636 * 179.97438 * 11 10 9 13 13 C 1.38328 * 120.06560 * 359.74430 * 12 11 10 14 14 C 1.38280 * 120.13472 * 0.51346 * 13 12 11 15 15 C 1.50701 * 119.96431 * 179.76740 * 14 13 12 16 16 C 1.50706 * 109.46942 * 269.72446 * 15 14 13 17 17 O 1.21280 * 119.99724 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99647 * 179.97438 * 16 15 14 19 19 N 1.40101 * 119.99342 * 179.97438 * 18 16 15 20 20 C 1.39183 * 119.99632 * 179.97438 * 19 18 16 21 21 C 1.39532 * 120.85728 * 0.27615 * 20 19 18 22 22 C 1.37841 * 119.09605 * 180.24630 * 21 20 19 23 23 N 1.32025 * 120.85961 * 359.73068 * 22 21 20 24 24 C 1.32077 * 121.89377 * 0.02562 * 23 22 21 25 25 Cl 1.73593 * 119.59517 * 180.02562 * 24 23 22 26 26 C 1.38082 * 120.80794 * 359.97438 * 24 23 22 27 27 C 1.38116 * 120.07323 * 359.48504 * 14 13 12 28 28 H 0.97000 * 120.00061 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.03091 * 359.95922 * 11 10 9 30 30 H 1.07993 * 119.96893 * 180.02562 * 12 11 10 31 31 H 1.07995 * 119.93607 * 180.27688 * 13 12 11 32 32 H 1.08996 * 109.47548 * 149.71956 * 15 14 13 33 33 H 1.09001 * 109.47331 * 29.71806 * 15 14 13 34 34 H 0.97000 * 120.00512 * 0.02562 * 18 16 15 35 35 H 0.97000 * 120.00736 * 0.02562 * 19 18 16 36 36 H 1.08004 * 120.45115 * 0.02562 * 21 20 19 37 37 H 1.08003 * 119.56467 * 179.74201 * 22 21 20 38 38 H 1.07996 * 120.47303 * 179.97438 * 26 24 23 39 39 H 1.07996 * 120.03956 * 180.23148 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 1.4688 -2.1362 0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9734 -2.4057 -0.1061 11 6 3.2232 -3.5747 -0.0926 12 6 3.8528 -4.7987 -0.2012 13 6 5.2288 -4.8614 -0.3288 14 6 5.9788 -3.6997 -0.3372 15 6 7.4781 -3.7727 -0.4711 16 6 8.1011 -3.8593 0.8984 17 8 7.3969 -3.8610 1.8858 18 7 9.4407 -3.9348 1.0257 19 7 10.0198 -4.0148 2.2989 20 6 11.4032 -4.0933 2.4305 21 6 12.2304 -4.0879 1.3068 22 6 13.5954 -4.1724 1.4789 23 7 14.1220 -4.2522 2.6869 24 6 13.3739 -4.2553 3.7754 25 17 14.1295 -4.3619 5.3347 26 6 11.9983 -4.1738 3.6884 27 6 5.3549 -2.4723 -0.2290 28 1 -0.4850 0.8400 0.0004 29 1 2.1485 -3.5262 0.0031 30 1 3.2701 -5.7079 -0.1912 31 1 5.7187 -5.8197 -0.4181 32 1 7.8414 -2.8798 -0.9798 33 1 7.7487 -4.6559 -1.0498 34 1 10.0039 -3.9330 0.2360 35 1 9.4567 -4.0162 3.0888 36 1 11.8067 -4.0221 0.3155 37 1 14.2425 -4.1732 0.6142 38 1 11.3918 -4.1772 4.5820 39 1 5.9409 -1.5652 -0.2394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001632517907.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:28 Heat of formation + Delta-G solvation = 35.729417 kcal Electronic energy + Delta-G solvation = -25588.045682 eV Core-core repulsion = 21523.958127 eV Total energy + Delta-G solvation = -4064.087555 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.92151 -40.05544 -39.07603 -37.29761 -36.87758 -36.38408 -33.41881 -32.48571 -32.21870 -31.44914 -29.85750 -29.36635 -27.06539 -25.21699 -24.31937 -23.30240 -22.02253 -21.59279 -20.56979 -19.09290 -18.18936 -17.75658 -17.15493 -16.88131 -16.31742 -16.25916 -15.87348 -15.26474 -15.07379 -15.03067 -14.69819 -14.40934 -14.30841 -14.03681 -13.77898 -13.56659 -13.16931 -12.69605 -12.53914 -12.36659 -12.23752 -11.99211 -11.82386 -11.69289 -11.39261 -10.94547 -10.86843 -10.78429 -10.35032 -10.29508 -10.19572 -10.07905 -9.50372 -9.43656 -8.90476 -8.25142 -8.08470 -7.42654 -6.43911 -4.10932 0.49486 0.86840 1.17349 1.55783 2.02511 2.22244 2.34000 3.19684 3.22971 3.24395 3.38094 3.61848 4.06346 4.21246 4.23549 4.37267 4.55898 4.57397 4.58654 4.69120 4.91806 5.04350 5.05530 5.17250 5.24081 5.36732 5.38789 5.59183 5.75020 5.84698 6.04714 6.17332 6.21267 6.44901 6.70714 6.79586 7.00416 7.12237 7.13644 7.25277 7.38899 7.54067 7.76544 7.93759 8.00618 8.91210 9.53051 10.63704 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.001811 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.649358 B =15454.502079 C =16209.848817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.160 3.840 11 C -0.214 4.214 12 C -0.076 4.076 13 C -0.187 4.187 14 C -0.040 4.040 15 C -0.080 4.080 16 C 0.514 3.486 17 O -0.512 6.512 18 N -0.534 5.534 19 N -0.522 5.522 20 C 0.270 3.730 21 C -0.256 4.256 22 C 0.166 3.834 23 N -0.523 5.523 24 C 0.223 3.777 25 Cl -0.030 7.030 26 C -0.230 4.230 27 C -0.173 4.173 28 H 0.279 0.721 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.422 0.578 35 H 0.440 0.560 36 H 0.136 0.864 37 H 0.167 0.833 38 H 0.147 0.853 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.989 -9.919 0.866 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.108 3.892 11 C -0.233 4.233 12 C -0.094 4.094 13 C -0.206 4.206 14 C -0.041 4.041 15 C -0.121 4.121 16 C 0.301 3.699 17 O -0.383 6.383 18 N -0.284 5.284 19 N -0.245 5.245 20 C 0.155 3.845 21 C -0.282 4.282 22 C 0.010 3.990 23 N -0.238 5.238 24 C 0.060 3.940 25 Cl -0.001 7.001 26 C -0.258 4.258 27 C -0.193 4.193 28 H 0.090 0.910 29 H 0.151 0.849 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.264 0.736 35 H 0.284 0.716 36 H 0.154 0.846 37 H 0.184 0.816 38 H 0.164 0.836 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 26.147 -9.590 1.662 27.899 hybrid contribution -0.700 0.696 0.034 0.988 sum 25.446 -8.894 1.696 27.009 Atomic orbital electron populations 1.69643 1.05544 1.28495 1.48000 1.24463 0.95033 0.98818 0.95695 0.86184 0.80360 0.81463 0.78914 1.19877 1.20759 1.18404 1.20761 0.76837 0.96639 1.52275 0.87618 1.83567 1.22651 1.25599 1.80444 1.19007 0.91510 0.85603 0.93127 1.21329 1.01238 0.91941 1.08813 1.20748 0.94129 0.96801 0.97710 1.20422 0.93996 0.96367 1.09803 1.18544 0.91420 0.93191 1.00978 1.20500 0.94004 1.05300 0.92290 1.21232 0.79274 0.76223 0.93184 1.90809 1.60448 1.47490 1.39549 1.45191 1.06367 1.78246 0.98555 1.43303 1.01923 1.79680 0.99640 1.17763 0.82131 0.90767 0.93822 1.21497 0.95017 1.13575 0.98121 1.22367 0.92070 0.90871 0.93663 1.67100 1.40286 1.18524 0.97877 1.21176 0.88169 0.96156 0.88524 1.98418 1.83188 1.95950 1.22571 1.21002 0.94042 1.13685 0.97088 1.19936 0.92085 0.96930 1.10312 0.91039 0.84892 0.87053 0.87617 0.87515 0.87549 0.73610 0.71601 0.84607 0.81614 0.83556 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.27 13.96 55.48 0.77 -24.49 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.57 28.62 -169.99 -4.86 16.71 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.39 -10.93 9.95 30.89 0.31 -10.62 16 8 H 0.11 3.02 5.44 -52.48 -0.29 2.74 16 9 O -0.22 -5.71 8.59 0.06 0.00 -5.71 16 10 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 11 C -0.21 -4.58 9.17 -39.40 -0.36 -4.94 16 12 C -0.08 -1.35 10.04 -39.61 -0.40 -1.74 16 13 C -0.19 -2.98 9.70 -39.53 -0.38 -3.36 16 14 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 15 C -0.08 -0.79 5.83 -29.03 -0.17 -0.96 16 16 C 0.51 5.83 7.94 -10.98 -0.09 5.75 16 17 O -0.51 -8.36 15.87 5.56 0.09 -8.27 16 18 N -0.53 -4.18 6.23 31.22 0.19 -3.98 16 19 N -0.52 -4.38 6.44 32.53 0.21 -4.18 16 20 C 0.27 2.08 6.77 -83.61 -0.57 1.51 16 21 C -0.26 -1.57 9.54 -39.24 -0.37 -1.95 16 22 C 0.17 1.11 11.17 -17.61 -0.20 0.91 16 23 N -0.52 -4.90 10.34 -10.46 -0.11 -5.01 16 24 C 0.22 2.04 7.27 -17.50 -0.13 1.91 16 25 Cl -0.03 -0.26 29.10 -51.86 -1.51 -1.76 16 26 C -0.23 -1.85 9.76 -39.21 -0.38 -2.23 16 27 C -0.17 -3.32 9.65 -39.40 -0.38 -3.70 16 28 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.13 2.99 5.64 -52.48 -0.30 2.69 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.11 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.42 1.84 6.69 -182.60 -1.22 0.62 16 35 H 0.44 3.99 8.03 -182.60 -1.47 2.53 16 36 H 0.14 0.46 6.33 -52.48 -0.33 0.13 16 37 H 0.17 0.59 8.06 -52.48 -0.42 0.17 16 38 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -34.21 360.63 -9.40 -43.61 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.69 Total: 3.11 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -3.93 Total: -15.45 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 1.07 Total: -37.66 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.09 Total: -13.99 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.86 Total: 16.71 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.51 Total: -1.76 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.21 -9.40 -43.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632517907.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.343 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds