Wall clock time and date at job start Wed Apr 1 2020 04:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86798 * 120.00301 * 2 1 4 4 H 1.48499 * 109.47466 * 269.99938 * 3 2 1 5 5 H 1.48497 * 109.47003 * 29.99984 * 3 2 1 6 6 H 1.48511 * 109.47119 * 149.99862 * 3 2 1 7 7 C 1.38657 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00320 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00206 * 179.97438 * 7 2 1 10 10 C 1.35755 * 117.00177 * 185.05444 * 9 7 2 11 11 C 1.38875 * 120.06775 * 354.47018 * 10 9 7 12 12 C 1.38099 * 119.92834 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06856 * 0.03189 * 12 11 10 14 14 C 1.50703 * 119.92818 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47358 * 89.99641 * 14 13 12 16 16 O 1.21284 * 119.99962 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00135 * 179.97438 * 15 14 13 18 18 N 1.40099 * 120.00176 * 179.97438 * 17 15 14 19 19 C 1.39172 * 120.00340 * 179.97438 * 18 17 15 20 20 C 1.39533 * 120.85404 * 359.97438 * 19 18 17 21 21 C 1.37841 * 119.09663 * 180.02562 * 20 19 18 22 22 N 1.32028 * 120.86149 * 0.02562 * 21 20 19 23 23 C 1.32074 * 121.88928 * 359.73051 * 22 21 20 24 24 Cl 1.73598 * 119.59446 * 180.28833 * 23 22 21 25 25 C 1.38087 * 120.80885 * 0.53396 * 23 22 21 26 26 C 1.38301 * 120.14156 * 0.24147 * 13 12 11 27 27 C 1.38106 * 120.06358 * 359.45898 * 26 13 12 28 28 H 0.96999 * 119.99507 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.03657 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.96259 * 180.02562 * 12 11 10 31 31 H 1.09004 * 109.46923 * 329.99399 * 14 13 12 32 32 H 1.09003 * 109.46944 * 209.99439 * 14 13 12 33 33 H 0.97006 * 120.00070 * 0.02562 * 17 15 14 34 34 H 0.97006 * 119.99754 * 0.02562 * 18 17 15 35 35 H 1.08002 * 120.45077 * 0.02562 * 20 19 18 36 36 H 1.08008 * 119.56751 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.46887 * 179.75145 * 25 23 22 38 38 H 1.07992 * 119.96531 * 179.70355 * 26 13 12 39 39 H 1.08002 * 120.02777 * 180.27427 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9733 -2.4059 -0.1060 11 6 3.2233 -3.5746 -0.0920 12 6 3.8532 -4.7988 -0.1995 13 6 5.2295 -4.8617 -0.3203 14 6 5.9137 -6.1995 -0.4368 15 6 6.0203 -6.5843 -1.8899 16 8 5.5833 -5.8453 -2.7466 17 7 6.6013 -7.7497 -2.2374 18 7 6.7000 -8.1077 -3.5883 19 6 7.3004 -9.3109 -3.9473 20 6 7.8106 -10.1737 -2.9766 21 6 8.3983 -11.3559 -3.3728 22 7 8.4823 -11.6754 -4.6511 23 6 8.0076 -10.8885 -5.5996 24 17 8.1433 -11.3710 -7.2617 25 6 7.4091 -9.6842 -5.2858 26 6 5.9797 -3.6999 -0.3288 27 6 5.3551 -2.4723 -0.2279 28 1 -0.4849 0.8401 -0.0004 29 1 2.1486 -3.5261 0.0036 30 1 3.2704 -5.7081 -0.1891 31 1 5.3332 -6.9521 0.0968 32 1 6.9119 -6.1359 -0.0036 33 1 6.9505 -8.3409 -1.5522 34 1 6.3505 -7.5167 -4.2735 35 1 7.7458 -9.9187 -1.9291 36 1 8.7961 -12.0292 -2.6279 37 1 7.0263 -9.0431 -6.0661 38 1 7.0546 -3.7526 -0.4185 39 1 5.9412 -1.5652 -0.2391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001640180957.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:29 Heat of formation + Delta-G solvation = 35.138232 kcal Electronic energy + Delta-G solvation = -25423.082637 eV Core-core repulsion = 21358.969446 eV Total energy + Delta-G solvation = -4064.113191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 347.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91139 -40.02074 -39.08403 -37.30642 -36.89513 -36.36990 -33.38621 -32.56195 -31.75017 -31.43923 -30.32113 -29.55223 -26.86806 -25.02072 -24.29497 -23.23391 -22.18814 -21.64758 -20.46974 -19.04106 -18.16785 -17.94825 -17.32685 -16.85262 -16.32385 -16.31097 -15.79526 -15.10962 -15.03642 -14.88303 -14.70081 -14.37313 -14.18634 -14.06031 -13.80887 -13.57661 -13.21256 -12.76148 -12.57150 -12.36741 -12.25317 -11.98084 -11.79516 -11.69506 -11.39095 -11.06798 -10.82356 -10.74134 -10.33827 -10.23635 -10.19823 -10.07974 -9.50560 -9.43817 -8.90719 -8.31441 -8.07407 -7.39625 -6.45776 -4.12366 0.49314 0.86948 1.19460 1.57936 2.08726 2.15332 2.37579 3.19296 3.23520 3.24278 3.37264 3.63681 4.06223 4.20237 4.25080 4.37536 4.57317 4.59020 4.63704 4.79663 4.97353 5.02881 5.05324 5.08824 5.24410 5.36761 5.41938 5.55711 5.65934 5.84975 6.06349 6.22433 6.25957 6.49174 6.71584 6.80317 6.96010 7.12500 7.15662 7.23173 7.38747 7.54801 7.75226 7.97494 7.99010 8.89185 9.50727 10.61643 Molecular weight = 347.08amu Principal moments of inertia in cm(-1) A = 0.025100 B = 0.001611 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.288776 B =17376.618769 C =17862.161076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.165 3.835 11 C -0.220 4.220 12 C -0.055 4.055 13 C -0.170 4.170 14 C -0.067 4.067 15 C 0.510 3.490 16 O -0.513 6.513 17 N -0.535 5.535 18 N -0.523 5.523 19 C 0.271 3.729 20 C -0.256 4.256 21 C 0.166 3.834 22 N -0.523 5.523 23 C 0.223 3.777 24 Cl -0.030 7.030 25 C -0.231 4.231 26 C -0.059 4.059 27 C -0.192 4.192 28 H 0.280 0.720 29 H 0.134 0.866 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.421 0.579 34 H 0.439 0.561 35 H 0.136 0.864 36 H 0.167 0.833 37 H 0.147 0.853 38 H 0.111 0.889 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.222 -21.952 -4.583 28.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.112 3.888 11 C -0.240 4.240 12 C -0.073 4.073 13 C -0.171 4.171 14 C -0.108 4.108 15 C 0.297 3.703 16 O -0.385 6.385 17 N -0.285 5.285 18 N -0.246 5.246 19 C 0.155 3.845 20 C -0.282 4.282 21 C 0.010 3.990 22 N -0.238 5.238 23 C 0.060 3.940 24 Cl -0.001 7.001 25 C -0.259 4.259 26 C -0.077 4.077 27 C -0.211 4.211 28 H 0.090 0.910 29 H 0.151 0.849 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.263 0.737 34 H 0.284 0.716 35 H 0.154 0.846 36 H 0.184 0.816 37 H 0.164 0.836 38 H 0.129 0.871 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.119 -21.728 -5.362 28.176 hybrid contribution -0.287 1.300 0.051 1.332 sum 16.831 -20.428 -5.311 26.996 Atomic orbital electron populations 1.69644 1.05578 1.28561 1.47708 1.24480 0.95046 0.98882 0.95592 0.86174 0.80307 0.81364 0.79015 1.19847 1.20735 1.18347 1.20778 0.76828 0.96678 1.52282 0.87571 1.83572 1.22700 1.25797 1.79915 1.19141 0.91724 0.85496 0.92440 1.21230 1.01136 0.91765 1.09819 1.20571 0.93156 0.96820 0.96766 1.18590 0.93584 0.92119 1.12824 1.20347 1.02999 0.97532 0.89950 1.21559 0.76952 0.78788 0.93034 1.90797 1.45952 1.50119 1.51597 1.45294 1.63932 1.22991 0.96291 1.43327 1.63976 1.19691 0.97595 1.17763 0.89302 0.84547 0.92876 1.21492 1.09178 0.97910 0.99660 1.22366 0.92021 0.93386 0.91213 1.67101 1.21819 1.34062 1.00842 1.21178 0.94635 0.90150 0.88052 1.98418 1.96396 1.92204 1.13125 1.21004 1.10368 0.99411 0.95094 1.20405 0.98160 0.91342 0.97810 1.20159 0.91970 0.97782 1.11191 0.90991 0.84864 0.87426 0.88138 0.88162 0.73700 0.71641 0.84625 0.81633 0.83573 0.87098 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.17 13.96 55.48 0.77 -24.39 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.53 28.62 -169.99 -4.86 16.67 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.39 -10.92 9.95 30.89 0.31 -10.62 16 8 H 0.11 3.03 5.44 -52.49 -0.29 2.74 16 9 O -0.22 -5.64 8.59 0.03 0.00 -5.64 16 10 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.22 -4.67 9.17 -39.40 -0.36 -5.03 16 12 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 13 C -0.17 -2.56 4.38 -104.57 -0.46 -3.02 16 14 C -0.07 -0.64 5.83 -29.04 -0.17 -0.81 16 15 C 0.51 5.64 7.94 -10.99 -0.09 5.55 16 16 O -0.51 -8.27 15.87 5.55 0.09 -8.18 16 17 N -0.54 -4.09 6.23 31.22 0.19 -3.90 16 18 N -0.52 -4.32 6.44 32.53 0.21 -4.11 16 19 C 0.27 2.05 6.77 -83.62 -0.57 1.48 16 20 C -0.26 -1.54 9.54 -39.24 -0.37 -1.92 16 21 C 0.17 1.09 11.17 -17.61 -0.20 0.89 16 22 N -0.52 -4.85 10.34 -10.46 -0.11 -4.96 16 23 C 0.22 2.02 7.27 -17.50 -0.13 1.89 16 24 Cl -0.03 -0.26 29.10 -51.86 -1.51 -1.76 16 25 C -0.23 -1.83 9.76 -39.21 -0.38 -2.21 16 26 C -0.06 -0.95 9.69 -39.61 -0.38 -1.33 16 27 C -0.19 -3.72 9.99 -39.39 -0.39 -4.12 16 28 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.13 2.98 5.64 -52.49 -0.30 2.68 16 30 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 31 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.42 1.78 6.69 -182.59 -1.22 0.56 16 34 H 0.44 3.95 8.03 -182.59 -1.47 2.48 16 35 H 0.14 0.44 6.33 -52.49 -0.33 0.11 16 36 H 0.17 0.57 8.06 -52.48 -0.42 0.14 16 37 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.12 2.13 8.06 -52.49 -0.42 1.70 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -33.92 360.63 -9.40 -43.32 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.69 Total: 2.91 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -3.93 Total: -15.39 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 1.07 Total: -37.36 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.86 Total: 16.67 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.51 Total: -1.76 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.92 -9.40 -43.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640180957.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.463 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds